EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000000144 (Gene tree)
Gene ID: 109969255
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 15288 bases
Position: chrKV884860.1:2010466-2025753
Accession: 109969255
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000000226	UPF1_Zn_bind	PF09416.10	1.8e-75	1	1
ENSMALP00000000226	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000000255	-	3228	XM_020615982	ENSMALP00000000226	1075 (aa)	XP_020471638	-

Gene Model

Click here to download ENSMALG00000000144's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000000144's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000000144	upf1	100	90.975	ENSMALG00000018100	-	100	91.041

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000000144	upf1	100	90.974	ENSG00000005007	UPF1	100	90.706	Homo_sapiens
ENSMALG00000000144	upf1	100	97.436	ENSAPOG00000023773	upf1	100	97.436	Acanthochromis_polyacanthus
ENSMALG00000000144	upf1	100	92.391	ENSAPOG00000010916	-	100	92.461	Acanthochromis_polyacanthus
ENSMALG00000000144	upf1	100	90.489	ENSAMEG00000011474	UPF1	100	90.222	Ailuropoda_melanoleuca
ENSMALG00000000144	upf1	93	92.210	ENSACIG00000010985	-	100	92.285	Amphilophus_citrinellus
ENSMALG00000000144	upf1	100	96.171	ENSACIG00000019949	upf1	100	96.171	Amphilophus_citrinellus
ENSMALG00000000144	upf1	100	92.391	ENSAOCG00000006352	-	100	92.461	Amphiprion_ocellaris
ENSMALG00000000144	upf1	100	96.964	ENSAOCG00000018519	upf1	100	96.964	Amphiprion_ocellaris
ENSMALG00000000144	upf1	100	92.391	ENSAPEG00000006292	-	100	92.461	Amphiprion_percula
ENSMALG00000000144	upf1	100	96.964	ENSAPEG00000016344	upf1	100	96.964	Amphiprion_percula
ENSMALG00000000144	upf1	100	95.336	ENSATEG00000017867	upf1	100	95.336	Anabas_testudineus
ENSMALG00000000144	upf1	100	92.391	ENSATEG00000016606	-	100	92.461	Anabas_testudineus
ENSMALG00000000144	upf1	95	92.694	ENSAPLG00000009175	UPF1	100	92.315	Anas_platyrhynchos
ENSMALG00000000144	upf1	95	90.350	ENSANAG00000024107	UPF1	96	89.972	Aotus_nancymaae
ENSMALG00000000144	upf1	100	96.354	ENSACLG00000007181	upf1	100	96.354	Astatotilapia_calliptera
ENSMALG00000000144	upf1	100	92.552	ENSACLG00000022630	-	100	92.371	Astatotilapia_calliptera
ENSMALG00000000144	upf1	100	94.182	ENSAMXG00000042187	upf1	100	93.909	Astyanax_mexicanus
ENSMALG00000000144	upf1	100	90.506	ENSBTAG00000020922	UPF1	100	90.240	Bos_taurus
ENSMALG00000000144	upf1	83	54.129	WBGene00004880	smg-2	83	54.129	Caenorhabditis_elegans
ENSMALG00000000144	upf1	100	90.088	ENSCJAG00000019627	UPF1	100	89.823	Callithrix_jacchus
ENSMALG00000000144	upf1	100	90.265	ENSCAFG00000014578	UPF1	100	90.000	Canis_familiaris
ENSMALG00000000144	upf1	100	91.153	ENSCAFG00020012347	UPF1	100	90.885	Canis_lupus_dingo
ENSMALG00000000144	upf1	100	91.398	ENSCHIG00000011018	UPF1	100	91.129	Capra_hircus
ENSMALG00000000144	upf1	95	92.293	ENSTSYG00000008877	UPF1	98	91.912	Carlito_syrichta
ENSMALG00000000144	upf1	96	91.345	ENSCAPG00000005758	UPF1	95	91.817	Cavia_aperea
ENSMALG00000000144	upf1	100	91.179	ENSCPOG00000025463	UPF1	100	90.999	Cavia_porcellus
ENSMALG00000000144	upf1	100	90.974	ENSCCAG00000032175	UPF1	100	90.706	Cebus_capucinus
ENSMALG00000000144	upf1	94	92.264	ENSCATG00000040306	UPF1	98	91.722	Cercocebus_atys
ENSMALG00000000144	upf1	95	92.198	ENSCLAG00000004037	UPF1	99	91.912	Chinchilla_lanigera
ENSMALG00000000144	upf1	100	90.974	ENSCSAG00000005276	UPF1	100	90.706	Chlorocebus_sabaeus
ENSMALG00000000144	upf1	100	91.644	ENSCPBG00000012513	UPF1	100	91.285	Chrysemys_picta_bellii
ENSMALG00000000144	upf1	78	79.930	ENSCING00000021399	-	99	79.577	Ciona_intestinalis
ENSMALG00000000144	upf1	99	73.279	ENSCSAVG00000006533	-	99	73.551	Ciona_savignyi
ENSMALG00000000144	upf1	95	92.198	ENSCANG00000029819	UPF1	97	91.817	Colobus_angolensis_palliatus
ENSMALG00000000144	upf1	100	91.113	ENSCGRG00001021067	Upf1	100	90.934	Cricetulus_griseus_chok1gshd
ENSMALG00000000144	upf1	95	91.912	ENSCGRG00000013480	Upf1	98	91.627	Cricetulus_griseus_crigri
ENSMALG00000000144	upf1	100	92.987	ENSCSEG00000016159	-	100	92.714	Cynoglossus_semilaevis
ENSMALG00000000144	upf1	100	91.360	ENSCSEG00000017239	upf1	100	91.268	Cynoglossus_semilaevis
ENSMALG00000000144	upf1	100	92.189	ENSCVAG00000010561	upf1	100	92.189	Cyprinodon_variegatus
ENSMALG00000000144	upf1	100	94.091	ENSDARG00000016302	upf1	100	94.182	Danio_rerio
ENSMALG00000000144	upf1	95	89.734	ENSDORG00000009984	Upf1	95	89.449	Dipodomys_ordii
ENSMALG00000000144	upf1	86	72.115	FBgn0030354	Upf1	81	70.790	Drosophila_melanogaster
ENSMALG00000000144	upf1	55	86.755	ENSEBUG00000010069	upf1	96	87.086	Eptatretus_burgeri
ENSMALG00000000144	upf1	100	91.398	ENSEASG00005006549	UPF1	100	91.129	Equus_asinus_asinus
ENSMALG00000000144	upf1	100	91.398	ENSECAG00000010639	UPF1	100	91.129	Equus_caballus
ENSMALG00000000144	upf1	100	93.303	ENSELUG00000020917	upf1	100	92.941	Esox_lucius
ENSMALG00000000144	upf1	100	92.412	ENSELUG00000012916	-	100	92.412	Esox_lucius
ENSMALG00000000144	upf1	100	90.265	ENSFCAG00000009757	UPF1	100	90.000	Felis_catus
ENSMALG00000000144	upf1	95	93.219	ENSFALG00000009312	UPF1	96	93.219	Ficedula_albicollis
ENSMALG00000000144	upf1	95	92.103	ENSFDAG00000014816	UPF1	99	91.817	Fukomys_damarensis
ENSMALG00000000144	upf1	100	91.809	ENSFHEG00000006428	upf1	100	91.544	Fundulus_heteroclitus
ENSMALG00000000144	upf1	86	94.514	ENSFHEG00000016276	-	96	94.514	Fundulus_heteroclitus
ENSMALG00000000144	upf1	100	91.441	ENSGMOG00000007541	upf1	100	91.606	Gadus_morhua
ENSMALG00000000144	upf1	100	91.406	ENSGALG00000003220	UPF1	100	90.958	Gallus_gallus
ENSMALG00000000144	upf1	64	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSMALG00000000144	upf1	100	92.616	ENSGAFG00000004831	upf1	100	92.616	Gambusia_affinis
ENSMALG00000000144	upf1	100	92.058	ENSGAGG00000022217	UPF1	100	91.877	Gopherus_agassizii
ENSMALG00000000144	upf1	95	93.173	ENSGGOG00000002608	UPF1	99	92.788	Gorilla_gorilla
ENSMALG00000000144	upf1	88	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMALG00000000144	upf1	90	97.436	ENSHBUG00000014694	upf1	100	97.436	Haplochromis_burtoni
ENSMALG00000000144	upf1	100	90.000	ENSHGLG00000010900	UPF1	100	89.912	Heterocephalus_glaber_female
ENSMALG00000000144	upf1	95	90.390	ENSHGLG00100005904	UPF1	96	90.200	Heterocephalus_glaber_male
ENSMALG00000000144	upf1	100	92.545	ENSHCOG00000008918	upf1	100	92.273	Hippocampus_comes
ENSMALG00000000144	upf1	100	94.636	ENSIPUG00000005108	UPF1	100	94.636	Ictalurus_punctatus
ENSMALG00000000144	upf1	100	90.885	ENSSTOG00000009196	UPF1	100	90.706	Ictidomys_tridecemlineatus
ENSMALG00000000144	upf1	100	90.383	ENSJJAG00000023151	Upf1	100	90.205	Jaculus_jaculus
ENSMALG00000000144	upf1	100	92.120	ENSKMAG00000004962	upf1	100	92.007	Kryptolebias_marmoratus
ENSMALG00000000144	upf1	100	95.058	ENSLBEG00000014862	upf1	100	95.058	Labrus_bergylta
ENSMALG00000000144	upf1	100	92.127	ENSLBEG00000027848	-	100	92.287	Labrus_bergylta
ENSMALG00000000144	upf1	63	92.253	ENSLACG00000008482	UPF1	100	91.822	Latimeria_chalumnae
ENSMALG00000000144	upf1	100	93.636	ENSLOCG00000002072	upf1	100	93.455	Lepisosteus_oculatus
ENSMALG00000000144	upf1	100	90.248	ENSLAFG00000014963	UPF1	100	89.805	Loxodonta_africana
ENSMALG00000000144	upf1	100	90.731	ENSMFAG00000037748	UPF1	100	90.463	Macaca_fascicularis
ENSMALG00000000144	upf1	100	90.489	ENSMMUG00000023286	UPF1	100	90.222	Macaca_mulatta
ENSMALG00000000144	upf1	100	90.731	ENSMNEG00000000046	UPF1	100	90.463	Macaca_nemestrina
ENSMALG00000000144	upf1	95	92.198	ENSMLEG00000028404	UPF1	99	91.817	Mandrillus_leucophaeus
ENSMALG00000000144	upf1	100	92.287	ENSMAMG00000006231	-	100	92.377	Mastacembelus_armatus
ENSMALG00000000144	upf1	100	95.336	ENSMAMG00000006229	upf1	100	95.247	Mastacembelus_armatus
ENSMALG00000000144	upf1	100	92.552	ENSMZEG00005016386	-	100	92.371	Maylandia_zebra
ENSMALG00000000144	upf1	100	95.315	ENSMZEG00005003489	upf1	100	95.315	Maylandia_zebra
ENSMALG00000000144	upf1	95	92.205	ENSMGAG00000004745	UPF1	100	91.825	Meleagris_gallopavo
ENSMALG00000000144	upf1	95	91.912	ENSMAUG00000011398	Upf1	95	91.627	Mesocricetus_auratus
ENSMALG00000000144	upf1	100	91.063	ENSMICG00000001659	UPF1	100	90.795	Microcebus_murinus
ENSMALG00000000144	upf1	100	90.222	ENSMOCG00000005699	Upf1	100	90.133	Microtus_ochrogaster
ENSMALG00000000144	upf1	95	89.790	ENSMMOG00000007537	-	99	89.856	Mola_mola
ENSMALG00000000144	upf1	100	96.242	ENSMMOG00000007881	upf1	100	96.242	Mola_mola
ENSMALG00000000144	upf1	100	90.291	ENSMODG00000003689	UPF1	100	90.115	Monodelphis_domestica
ENSMALG00000000144	upf1	100	91.023	MGP_CAROLIEiJ_G0031142	Upf1	100	90.844	Mus_caroli
ENSMALG00000000144	upf1	100	91.023	ENSMUSG00000058301	Upf1	100	90.844	Mus_musculus
ENSMALG00000000144	upf1	100	91.023	MGP_PahariEiJ_G0021607	Upf1	100	90.844	Mus_pahari
ENSMALG00000000144	upf1	100	91.023	MGP_SPRETEiJ_G0032260	Upf1	100	90.844	Mus_spretus
ENSMALG00000000144	upf1	100	91.153	ENSMPUG00000015516	UPF1	100	90.885	Mustela_putorius_furo
ENSMALG00000000144	upf1	99	91.031	ENSMLUG00000012122	UPF1	99	90.762	Myotis_lucifugus
ENSMALG00000000144	upf1	100	89.805	ENSNGAG00000024107	Upf1	100	89.628	Nannospalax_galili
ENSMALG00000000144	upf1	100	89.142	ENSNBRG00000022069	-	100	91.448	Neolamprologus_brichardi
ENSMALG00000000144	upf1	100	94.257	ENSNBRG00000000670	upf1	100	93.801	Neolamprologus_brichardi
ENSMALG00000000144	upf1	95	86.489	ENSNLEG00000006062	UPF1	99	86.108	Nomascus_leucogenys
ENSMALG00000000144	upf1	83	87.059	ENSMEUG00000014146	-	83	86.275	Notamacropus_eugenii
ENSMALG00000000144	upf1	95	86.538	ENSOPRG00000014018	UPF1	99	86.455	Ochotona_princeps
ENSMALG00000000144	upf1	100	91.171	ENSODEG00000012426	UPF1	100	90.901	Octodon_degus
ENSMALG00000000144	upf1	100	92.301	ENSONIG00000012729	-	100	92.189	Oreochromis_niloticus
ENSMALG00000000144	upf1	100	95.315	ENSONIG00000010452	upf1	100	95.315	Oreochromis_niloticus
ENSMALG00000000144	upf1	100	90.417	ENSOANG00000004568	UPF1	100	89.973	Ornithorhynchus_anatinus
ENSMALG00000000144	upf1	100	92.007	ENSORLG00000008453	upf1	100	91.553	Oryzias_latipes
ENSMALG00000000144	upf1	100	91.924	ENSORLG00020014758	upf1	100	91.470	Oryzias_latipes_hni
ENSMALG00000000144	upf1	100	91.924	ENSORLG00015010165	upf1	100	91.470	Oryzias_latipes_hsok
ENSMALG00000000144	upf1	100	92.461	ENSOMEG00000003665	upf1	100	92.007	Oryzias_melastigma
ENSMALG00000000144	upf1	100	91.063	ENSOGAG00000012866	UPF1	100	90.795	Otolemur_garnettii
ENSMALG00000000144	upf1	96	89.227	ENSOARG00000010739	UPF1	100	88.674	Ovis_aries
ENSMALG00000000144	upf1	95	92.198	ENSPPAG00000043884	UPF1	96	91.817	Pan_paniscus
ENSMALG00000000144	upf1	100	90.265	ENSPPRG00000023470	UPF1	100	90.000	Panthera_pardus
ENSMALG00000000144	upf1	95	91.171	ENSPTIG00000010159	UPF1	99	90.787	Panthera_tigris_altaica
ENSMALG00000000144	upf1	100	90.731	ENSPTRG00000010721	UPF1	100	90.463	Pan_troglodytes
ENSMALG00000000144	upf1	100	90.731	ENSPANG00000008847	UPF1	100	90.463	Papio_anubis
ENSMALG00000000144	upf1	92	95.604	ENSPKIG00000006069	upf1	95	96.457	Paramormyrops_kingsleyae
ENSMALG00000000144	upf1	69	91.503	ENSPSIG00000009491	UPF1	100	90.980	Pelodiscus_sinensis
ENSMALG00000000144	upf1	100	92.559	ENSPMGG00000017327	upf1	100	92.650	Periophthalmus_magnuspinnatus
ENSMALG00000000144	upf1	100	90.222	ENSPEMG00000001085	Upf1	100	90.044	Peromyscus_maniculatus_bairdii
ENSMALG00000000144	upf1	100	86.618	ENSPMAG00000001206	upf1	100	86.528	Petromyzon_marinus
ENSMALG00000000144	upf1	100	91.682	ENSPCIG00000006156	UPF1	100	91.413	Phascolarctos_cinereus
ENSMALG00000000144	upf1	100	92.616	ENSPLAG00000016232	-	100	92.616	Poecilia_latipinna
ENSMALG00000000144	upf1	100	93.051	ENSPLAG00000018155	-	100	92.509	Poecilia_latipinna
ENSMALG00000000144	upf1	100	92.532	ENSPMEG00000016319	-	100	92.532	Poecilia_mexicana
ENSMALG00000000144	upf1	100	94.247	ENSPMEG00000011443	-	100	93.699	Poecilia_mexicana
ENSMALG00000000144	upf1	100	92.434	ENSPREG00000011247	-	100	92.252	Poecilia_reticulata
ENSMALG00000000144	upf1	100	92.973	ENSPREG00000009940	upf1	100	92.523	Poecilia_reticulata
ENSMALG00000000144	upf1	100	86.275	ENSPPYG00000009752	UPF1	100	86.007	Pongo_abelii
ENSMALG00000000144	upf1	75	97.306	ENSPCAG00000012962	UPF1	76	97.306	Procavia_capensis
ENSMALG00000000144	upf1	100	90.747	ENSPCOG00000023813	UPF1	100	90.480	Propithecus_coquereli
ENSMALG00000000144	upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMALG00000000144	upf1	100	92.552	ENSPNYG00000016731	-	100	92.371	Pundamilia_nyererei
ENSMALG00000000144	upf1	100	95.315	ENSPNYG00000003694	upf1	100	95.315	Pundamilia_nyererei
ENSMALG00000000144	upf1	100	94.273	ENSPNAG00000025614	upf1	100	94.000	Pygocentrus_nattereri
ENSMALG00000000144	upf1	100	91.023	ENSRNOG00000020134	Upf1	100	90.844	Rattus_norvegicus
ENSMALG00000000144	upf1	95	89.819	ENSRBIG00000013894	UPF1	98	92.552	Rhinopithecus_bieti
ENSMALG00000000144	upf1	95	92.198	ENSRROG00000040935	UPF1	98	92.552	Rhinopithecus_roxellana
ENSMALG00000000144	upf1	74	57.697	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSMALG00000000144	upf1	94	92.190	ENSSBOG00000023632	UPF1	96	91.810	Saimiri_boliviensis_boliviensis
ENSMALG00000000144	upf1	95	92.593	ENSSHAG00000010499	UPF1	100	92.213	Sarcophilus_harrisii
ENSMALG00000000144	upf1	100	94.278	ENSSFOG00015021095	upf1	100	94.278	Scleropages_formosus
ENSMALG00000000144	upf1	100	92.650	ENSSMAG00000021018	-	100	92.468	Scophthalmus_maximus
ENSMALG00000000144	upf1	100	94.250	ENSSMAG00000005055	upf1	100	94.250	Scophthalmus_maximus
ENSMALG00000000144	upf1	100	95.695	ENSSDUG00000013320	upf1	100	95.605	Seriola_dumerili
ENSMALG00000000144	upf1	100	92.398	ENSSDUG00000009629	-	100	92.468	Seriola_dumerili
ENSMALG00000000144	upf1	100	96.561	ENSSLDG00000020868	upf1	100	96.561	Seriola_lalandi_dorsalis
ENSMALG00000000144	upf1	100	92.398	ENSSLDG00000006878	-	100	92.468	Seriola_lalandi_dorsalis
ENSMALG00000000144	upf1	100	91.712	ENSSPUG00000010538	UPF1	100	91.441	Sphenodon_punctatus
ENSMALG00000000144	upf1	100	93.722	ENSSPAG00000000003	upf1	100	93.796	Stegastes_partitus
ENSMALG00000000144	upf1	100	92.727	ENSSPAG00000011521	-	100	92.545	Stegastes_partitus
ENSMALG00000000144	upf1	100	91.308	ENSSSCG00000039301	UPF1	99	92.802	Sus_scrofa
ENSMALG00000000144	upf1	84	87.193	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSMALG00000000144	upf1	100	92.175	ENSTRUG00000005131	-	100	91.993	Takifugu_rubripes
ENSMALG00000000144	upf1	100	95.576	ENSTRUG00000000150	upf1	100	95.300	Takifugu_rubripes
ENSMALG00000000144	upf1	100	87.634	ENSTTRG00000011544	UPF1	100	87.276	Tursiops_truncatus
ENSMALG00000000144	upf1	100	91.153	ENSUAMG00000007093	UPF1	100	90.885	Ursus_americanus
ENSMALG00000000144	upf1	95	93.282	ENSUMAG00000006652	UPF1	99	93.568	Ursus_maritimus
ENSMALG00000000144	upf1	100	91.153	ENSVVUG00000007797	UPF1	100	90.885	Vulpes_vulpes
ENSMALG00000000144	upf1	100	78.590	ENSXETG00000013602	upf1	100	78.062	Xenopus_tropicalis
ENSMALG00000000144	upf1	97	94.571	ENSXCOG00000015275	-	96	94.460	Xiphophorus_couchianus
ENSMALG00000000144	upf1	94	92.892	ENSXCOG00000005764	-	99	92.892	Xiphophorus_couchianus
ENSMALG00000000144	upf1	100	94.664	ENSXMAG00000001703	-	100	94.557	Xiphophorus_maculatus
ENSMALG00000000144	upf1	100	92.623	ENSXMAG00000002540	-	100	92.623	Xiphophorus_maculatus