EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000001106 (Gene tree)
Gene ID: 109970497
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 17904 bases
Position: chrKV884887.1:517926-535829
Accession: 109970497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000001468	EST1	PF10374.9	4.8e-14	1	1
ENSMALP00000001468	EST1_DNA_bind	PF10373.9	2.3e-58	1	1
ENSMALP00000001468	PIN_4	PF13638.6	7.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000001518	-	9076	XM_020618065	ENSMALP00000001468	1667 (aa)	XP_020473721	UPI0009B34816

Gene Model

Click here to download ENSMALG00000001106's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000001106's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000001106	smg6	73	55.400	ENSG00000070366	SMG6	100	57.664	Homo_sapiens
ENSMALG00000001106	smg6	100	79.187	ENSAPOG00000019448	smg6	100	79.545	Acanthochromis_polyacanthus
ENSMALG00000001106	smg6	73	55.417	ENSAMEG00000007632	SMG6	83	54.844	Ailuropoda_melanoleuca
ENSMALG00000001106	smg6	93	76.144	ENSACIG00000012997	smg6	100	76.015	Amphilophus_citrinellus
ENSMALG00000001106	smg6	100	79.486	ENSAOCG00000002630	smg6	100	79.964	Amphiprion_ocellaris
ENSMALG00000001106	smg6	100	79.486	ENSAPEG00000019101	smg6	100	79.964	Amphiprion_percula
ENSMALG00000001106	smg6	100	78.900	ENSATEG00000006483	smg6	100	78.900	Anabas_testudineus
ENSMALG00000001106	smg6	64	48.909	ENSACAG00000011783	SMG6	87	47.627	Anolis_carolinensis
ENSMALG00000001106	smg6	73	54.826	ENSANAG00000035760	SMG6	83	54.779	Aotus_nancymaae
ENSMALG00000001106	smg6	100	76.523	ENSACLG00000005288	smg6	100	78.286	Astatotilapia_calliptera
ENSMALG00000001106	smg6	80	68.510	ENSAMXG00000017326	smg6	89	68.007	Astyanax_mexicanus
ENSMALG00000001106	smg6	73	55.280	ENSBTAG00000000267	SMG6	85	54.314	Bos_taurus
ENSMALG00000001106	smg6	73	55.322	ENSCJAG00000001820	SMG6	83	54.821	Callithrix_jacchus
ENSMALG00000001106	smg6	73	55.694	ENSCAFG00000019260	SMG6	83	55.102	Canis_familiaris
ENSMALG00000001106	smg6	73	55.694	ENSCAFG00020009770	SMG6	83	55.102	Canis_lupus_dingo
ENSMALG00000001106	smg6	74	55.035	ENSCHIG00000021998	SMG6	85	54.376	Capra_hircus
ENSMALG00000001106	smg6	73	54.907	ENSTSYG00000003406	SMG6	100	57.299	Carlito_syrichta
ENSMALG00000001106	smg6	73	46.118	ENSCAPG00000016197	SMG6	81	51.927	Cavia_aperea
ENSMALG00000001106	smg6	73	54.588	ENSCPOG00000014878	SMG6	84	59.242	Cavia_porcellus
ENSMALG00000001106	smg6	74	54.587	ENSCCAG00000035801	SMG6	85	54.170	Cebus_capucinus
ENSMALG00000001106	smg6	73	55.124	ENSCATG00000031956	SMG6	83	54.623	Cercocebus_atys
ENSMALG00000001106	smg6	73	54.938	ENSCLAG00000006748	SMG6	84	58.768	Chinchilla_lanigera
ENSMALG00000001106	smg6	73	55.280	ENSCSAG00000013800	SMG6	83	54.779	Chlorocebus_sabaeus
ENSMALG00000001106	smg6	74	54.062	ENSCPBG00000020369	SMG6	83	53.282	Chrysemys_picta_bellii
ENSMALG00000001106	smg6	73	54.969	ENSCANG00000031764	SMG6	100	58.029	Colobus_angolensis_palliatus
ENSMALG00000001106	smg6	73	50.895	ENSCGRG00000007782	Smg6	84	50.543	Cricetulus_griseus_crigri
ENSMALG00000001106	smg6	100	68.955	ENSCSEG00000012757	smg6	100	69.562	Cynoglossus_semilaevis
ENSMALG00000001106	smg6	100	66.865	ENSCVAG00000012789	smg6	100	67.044	Cyprinodon_variegatus
ENSMALG00000001106	smg6	100	57.016	ENSDARG00000100481	smg6	100	55.451	Danio_rerio
ENSMALG00000001106	smg6	73	54.673	ENSDNOG00000048283	SMG6	83	53.948	Dasypus_novemcinctus
ENSMALG00000001106	smg6	73	51.345	ENSDORG00000016614	Smg6	84	59.716	Dipodomys_ordii
ENSMALG00000001106	smg6	84	87.500	ENSETEG00000016790	SMG6	76	87.500	Echinops_telfairi
ENSMALG00000001106	smg6	59	47.425	ENSEBUG00000005059	smg6	63	47.082	Eptatretus_burgeri
ENSMALG00000001106	smg6	73	47.160	ENSEEUG00000003493	SMG6	80	57.143	Erinaceus_europaeus
ENSMALG00000001106	smg6	99	64.986	ENSELUG00000005934	smg6	92	67.464	Esox_lucius
ENSMALG00000001106	smg6	73	55.729	ENSFCAG00000028817	SMG6	83	55.156	Felis_catus
ENSMALG00000001106	smg6	77	54.211	ENSFALG00000006538	SMG6	88	53.916	Ficedula_albicollis
ENSMALG00000001106	smg6	73	55.081	ENSFDAG00000015106	SMG6	84	58.768	Fukomys_damarensis
ENSMALG00000001106	smg6	100	67.998	ENSFHEG00000013282	smg6	100	66.942	Fundulus_heteroclitus
ENSMALG00000001106	smg6	73	55.344	ENSGALG00000003108	SMG6	81	53.912	Gallus_gallus
ENSMALG00000001106	smg6	100	69.048	ENSGAFG00000000379	smg6	100	68.085	Gambusia_affinis
ENSMALG00000001106	smg6	81	77.177	ENSGACG00000020521	smg6	96	77.526	Gasterosteus_aculeatus
ENSMALG00000001106	smg6	74	53.483	ENSGAGG00000025617	SMG6	85	52.832	Gopherus_agassizii
ENSMALG00000001106	smg6	73	55.245	ENSGGOG00000017156	SMG6	83	54.821	Gorilla_gorilla
ENSMALG00000001106	smg6	100	76.464	ENSHBUG00000021311	smg6	100	76.703	Haplochromis_burtoni
ENSMALG00000001106	smg6	74	54.713	ENSHGLG00000012882	SMG6	84	57.820	Heterocephalus_glaber_female
ENSMALG00000001106	smg6	74	54.943	ENSHGLG00100017815	SMG6	84	57.820	Heterocephalus_glaber_male
ENSMALG00000001106	smg6	64	69.907	ENSHCOG00000008761	smg6	83	70.185	Hippocampus_comes
ENSMALG00000001106	smg6	100	53.716	ENSIPUG00000012493	smg6	100	53.400	Ictalurus_punctatus
ENSMALG00000001106	smg6	73	55.202	ENSSTOG00000028127	SMG6	84	59.242	Ictidomys_tridecemlineatus
ENSMALG00000001106	smg6	54	53.284	ENSJJAG00000015367	Smg6	62	56.965	Jaculus_jaculus
ENSMALG00000001106	smg6	100	70.968	ENSKMAG00000000279	smg6	100	70.644	Kryptolebias_marmoratus
ENSMALG00000001106	smg6	100	76.826	ENSLBEG00000002184	smg6	100	76.707	Labrus_bergylta
ENSMALG00000001106	smg6	66	64.978	ENSLOCG00000006448	smg6	99	55.098	Lepisosteus_oculatus
ENSMALG00000001106	smg6	82	51.475	ENSLAFG00000001261	SMG6	83	54.310	Loxodonta_africana
ENSMALG00000001106	smg6	73	55.280	ENSMFAG00000003394	SMG6	83	54.779	Macaca_fascicularis
ENSMALG00000001106	smg6	73	54.891	ENSMMUG00000023161	SMG6	83	54.390	Macaca_mulatta
ENSMALG00000001106	smg6	73	52.996	ENSMNEG00000044592	SMG6	83	52.570	Macaca_nemestrina
ENSMALG00000001106	smg6	69	59.266	ENSMLEG00000029353	SMG6	84	59.227	Mandrillus_leucophaeus
ENSMALG00000001106	smg6	100	81.209	ENSMAMG00000020119	smg6	100	81.842	Mastacembelus_armatus
ENSMALG00000001106	smg6	100	76.629	ENSMZEG00005024736	smg6	100	77.227	Maylandia_zebra
ENSMALG00000001106	smg6	50	53.766	ENSMGAG00000005401	-	76	52.813	Meleagris_gallopavo
ENSMALG00000001106	smg6	73	54.869	ENSMICG00000012913	SMG6	83	54.864	Microcebus_murinus
ENSMALG00000001106	smg6	100	70.958	ENSMMOG00000010883	smg6	100	71.377	Mola_mola
ENSMALG00000001106	smg6	73	55.047	ENSMODG00000010622	SMG6	83	54.874	Monodelphis_domestica
ENSMALG00000001106	smg6	73	54.869	MGP_CAROLIEiJ_G0016729	Smg6	98	65.217	Mus_caroli
ENSMALG00000001106	smg6	73	55.210	ENSMUSG00000038290	Smg6	97	66.295	Mus_musculus
ENSMALG00000001106	smg6	73	54.934	MGP_PahariEiJ_G0017866	Smg6	97	66.387	Mus_pahari
ENSMALG00000001106	smg6	73	55.132	MGP_SPRETEiJ_G0017572	Smg6	97	66.017	Mus_spretus
ENSMALG00000001106	smg6	73	55.495	ENSMPUG00000013046	SMG6	83	54.844	Mustela_putorius_furo
ENSMALG00000001106	smg6	73	55.461	ENSMLUG00000005739	SMG6	83	55.062	Myotis_lucifugus
ENSMALG00000001106	smg6	73	54.102	ENSNGAG00000007287	Smg6	84	59.242	Nannospalax_galili
ENSMALG00000001106	smg6	98	73.023	ENSNBRG00000009511	smg6	98	76.857	Neolamprologus_brichardi
ENSMALG00000001106	smg6	73	55.089	ENSNLEG00000017171	SMG6	100	57.664	Nomascus_leucogenys
ENSMALG00000001106	smg6	73	54.397	ENSMEUG00000015804	SMG6	85	53.822	Notamacropus_eugenii
ENSMALG00000001106	smg6	51	61.140	ENSOPRG00000000579	SMG6	82	61.458	Ochotona_princeps
ENSMALG00000001106	smg6	73	49.494	ENSODEG00000008038	SMG6	81	53.488	Octodon_degus
ENSMALG00000001106	smg6	100	76.703	ENSONIG00000005594	smg6	99	81.026	Oreochromis_niloticus
ENSMALG00000001106	smg6	73	55.253	ENSOCUG00000013018	SMG6	83	54.312	Oryctolagus_cuniculus
ENSMALG00000001106	smg6	100	67.302	ENSORLG00000003317	smg6	100	67.776	Oryzias_latipes
ENSMALG00000001106	smg6	100	67.224	ENSORLG00020015343	smg6	100	67.481	Oryzias_latipes_hni
ENSMALG00000001106	smg6	100	67.601	ENSORLG00015020454	smg6	100	68.076	Oryzias_latipes_hsok
ENSMALG00000001106	smg6	100	66.766	ENSOMEG00000010838	smg6	100	67.840	Oryzias_melastigma
ENSMALG00000001106	smg6	73	55.058	ENSOGAG00000004483	SMG6	83	54.806	Otolemur_garnettii
ENSMALG00000001106	smg6	74	55.111	ENSOARG00000015076	SMG6	87	54.531	Ovis_aries
ENSMALG00000001106	smg6	73	54.969	ENSPPAG00000043296	SMG6	83	54.545	Pan_paniscus
ENSMALG00000001106	smg6	73	55.729	ENSPPRG00000014581	SMG6	83	55.156	Panthera_pardus
ENSMALG00000001106	smg6	73	55.729	ENSPTIG00000008925	SMG6	100	57.847	Panthera_tigris_altaica
ENSMALG00000001106	smg6	73	54.903	ENSPTRG00000008544	SMG6	100	57.664	Pan_troglodytes
ENSMALG00000001106	smg6	73	55.607	ENSPANG00000024588	SMG6	83	54.701	Papio_anubis
ENSMALG00000001106	smg6	66	53.106	ENSPSIG00000006660	SMG6	81	53.100	Pelodiscus_sinensis
ENSMALG00000001106	smg6	96	78.856	ENSPMGG00000000844	smg6	100	77.793	Periophthalmus_magnuspinnatus
ENSMALG00000001106	smg6	73	55.486	ENSPEMG00000020707	Smg6	85	59.716	Peromyscus_maniculatus_bairdii
ENSMALG00000001106	smg6	100	69.171	ENSPFOG00000012035	smg6	95	75.620	Poecilia_formosa
ENSMALG00000001106	smg6	100	69.052	ENSPLAG00000017660	smg6	100	68.675	Poecilia_latipinna
ENSMALG00000001106	smg6	100	69.112	ENSPMEG00000000258	smg6	100	68.675	Poecilia_mexicana
ENSMALG00000001106	smg6	100	68.534	ENSPREG00000010066	smg6	100	67.542	Poecilia_reticulata
ENSMALG00000001106	smg6	73	51.236	ENSPPYG00000007790	SMG6	83	51.006	Pongo_abelii
ENSMALG00000001106	smg6	73	54.749	ENSPCOG00000020925	SMG6	83	54.545	Propithecus_coquereli
ENSMALG00000001106	smg6	70	62.500	ENSPVAG00000002159	SMG6	72	55.515	Pteropus_vampyrus
ENSMALG00000001106	smg6	93	73.907	ENSPNYG00000024151	smg6	98	76.658	Pundamilia_nyererei
ENSMALG00000001106	smg6	74	61.739	ENSPNAG00000015480	smg6	78	60.000	Pygocentrus_nattereri
ENSMALG00000001106	smg6	73	54.834	ENSRNOG00000003041	Smg6	97	66.033	Rattus_norvegicus
ENSMALG00000001106	smg6	73	55.280	ENSRBIG00000024746	SMG6	83	54.779	Rhinopithecus_bieti
ENSMALG00000001106	smg6	73	55.280	ENSRROG00000030423	SMG6	100	58.029	Rhinopithecus_roxellana
ENSMALG00000001106	smg6	73	55.245	ENSSBOG00000022518	SMG6	83	53.069	Saimiri_boliviensis_boliviensis
ENSMALG00000001106	smg6	94	54.615	ENSSFOG00015005436	smg6	91	55.527	Scleropages_formosus
ENSMALG00000001106	smg6	100	77.844	ENSSMAG00000019777	smg6	100	77.844	Scophthalmus_maximus
ENSMALG00000001106	smg6	100	83.562	ENSSDUG00000016412	smg6	100	83.622	Seriola_dumerili
ENSMALG00000001106	smg6	91	83.750	ENSSLDG00000020747	smg6	98	83.816	Seriola_lalandi_dorsalis
ENSMALG00000001106	smg6	73	54.176	ENSSPUG00000007152	SMG6	84	53.005	Sphenodon_punctatus
ENSMALG00000001106	smg6	100	79.473	ENSSPAG00000015633	smg6	100	79.593	Stegastes_partitus
ENSMALG00000001106	smg6	73	55.765	ENSSSCG00000017826	SMG6	83	55.102	Sus_scrofa
ENSMALG00000001106	smg6	77	53.863	ENSTGUG00000005836	SMG6	87	53.684	Taeniopygia_guttata
ENSMALG00000001106	smg6	90	69.661	ENSTRUG00000000358	smg6	97	74.116	Takifugu_rubripes
ENSMALG00000001106	smg6	91	78.475	ENSTNIG00000016164	smg6	100	79.190	Tetraodon_nigroviridis
ENSMALG00000001106	smg6	73	53.110	ENSTBEG00000011424	SMG6	83	52.455	Tupaia_belangeri
ENSMALG00000001106	smg6	65	56.695	ENSTTRG00000001175	SMG6	74	56.491	Tursiops_truncatus
ENSMALG00000001106	smg6	73	55.383	ENSUAMG00000025152	SMG6	85	54.849	Ursus_americanus
ENSMALG00000001106	smg6	73	55.314	ENSUMAG00000009306	SMG6	85	54.844	Ursus_maritimus
ENSMALG00000001106	smg6	60	95.833	ENSVPAG00000000225	SMG6	70	95.833	Vicugna_pacos
ENSMALG00000001106	smg6	73	55.962	ENSVVUG00000021727	SMG6	84	55.635	Vulpes_vulpes
ENSMALG00000001106	smg6	82	48.323	ENSXETG00000023799	SMG6	89	49.734	Xenopus_tropicalis
ENSMALG00000001106	smg6	98	66.768	ENSXCOG00000009867	smg6	99	65.956	Xiphophorus_couchianus
ENSMALG00000001106	smg6	100	68.772	ENSXMAG00000010321	smg6	100	68.100	Xiphophorus_maculatus