EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000001197 (Gene tree)
Gene ID: 109958208
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 8772 bases
Position: chrKV884689.1:4778156-4786927
Accession: 109958208
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000001592	zf-U1	PF06220.12	1.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000001643	-	3470	XM_020597086	ENSMALP00000001592	147 (aa)	XP_020452742	UPI0009B3452C

Gene Model

Click here to download ENSMALG00000001197's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000001197's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000001197	snrpc	100	65.244	ENSG00000124562	SNRPC	100	66.667	Homo_sapiens
ENSMALG00000001197	snrpc	100	97.973	ENSAPOG00000013907	snrpc	100	97.973	Acanthochromis_polyacanthus
ENSMALG00000001197	snrpc	100	65.244	ENSAMEG00000000963	SNRPC	87	65.605	Ailuropoda_melanoleuca
ENSMALG00000001197	snrpc	98	93.793	ENSACIG00000010867	snrpc	100	93.793	Amphilophus_citrinellus
ENSMALG00000001197	snrpc	100	97.973	ENSAOCG00000021151	snrpc	100	97.973	Amphiprion_ocellaris
ENSMALG00000001197	snrpc	100	97.973	ENSAPEG00000023221	snrpc	100	97.973	Amphiprion_percula
ENSMALG00000001197	snrpc	100	97.973	ENSATEG00000025133	snrpc	100	97.973	Anabas_testudineus
ENSMALG00000001197	snrpc	100	63.694	ENSANAG00000021026	-	100	58.667	Aotus_nancymaae
ENSMALG00000001197	snrpc	100	67.073	ENSANAG00000007843	-	100	66.667	Aotus_nancymaae
ENSMALG00000001197	snrpc	100	70.667	ENSANAG00000019726	-	92	69.333	Aotus_nancymaae
ENSMALG00000001197	snrpc	100	63.743	ENSANAG00000019157	-	100	62.893	Aotus_nancymaae
ENSMALG00000001197	snrpc	100	58.861	ENSANAG00000021444	-	100	56.291	Aotus_nancymaae
ENSMALG00000001197	snrpc	100	95.973	ENSACLG00000000843	snrpc	100	95.973	Astatotilapia_calliptera
ENSMALG00000001197	snrpc	100	79.375	ENSAMXG00000032641	snrpc	100	62.838	Astyanax_mexicanus
ENSMALG00000001197	snrpc	100	65.854	ENSCJAG00000043055	-	100	66.875	Callithrix_jacchus
ENSMALG00000001197	snrpc	100	66.667	ENSCAFG00000031775	-	100	65.625	Canis_familiaris
ENSMALG00000001197	snrpc	100	58.385	ENSCAFG00000025525	-	100	57.233	Canis_familiaris
ENSMALG00000001197	snrpc	99	57.325	ENSCAFG00020009944	-	90	58.599	Canis_lupus_dingo
ENSMALG00000001197	snrpc	100	66.667	ENSCAFG00020017383	-	100	65.625	Canis_lupus_dingo
ENSMALG00000001197	snrpc	100	69.737	ENSCHIG00000005039	-	100	61.842	Capra_hircus
ENSMALG00000001197	snrpc	51	89.333	ENSTSYG00000029745	-	78	62.179	Carlito_syrichta
ENSMALG00000001197	snrpc	100	56.376	ENSTSYG00000025721	-	100	53.741	Carlito_syrichta
ENSMALG00000001197	snrpc	100	61.905	ENSCCAG00000028293	-	100	59.864	Cebus_capucinus
ENSMALG00000001197	snrpc	100	64.780	ENSCCAG00000036059	-	89	62.893	Cebus_capucinus
ENSMALG00000001197	snrpc	98	60.870	ENSCCAG00000022751	-	95	51.829	Cebus_capucinus
ENSMALG00000001197	snrpc	100	60.377	ENSCHOG00000011439	SNRPC	88	56.051	Choloepus_hoffmanni
ENSMALG00000001197	snrpc	88	63.265	ENSCANG00000028035	SNRPC	100	66.667	Colobus_angolensis_palliatus
ENSMALG00000001197	snrpc	51	66.667	ENSCGRG00001021483	-	100	57.143	Cricetulus_griseus_chok1gshd
ENSMALG00000001197	snrpc	100	97.315	ENSCSEG00000016845	snrpc	100	97.315	Cynoglossus_semilaevis
ENSMALG00000001197	snrpc	100	96.622	ENSCVAG00000014297	snrpc	100	96.622	Cyprinodon_variegatus
ENSMALG00000001197	snrpc	100	73.750	ENSDARG00000009871	snrpc	100	71.250	Danio_rerio
ENSMALG00000001197	snrpc	100	69.281	ENSDORG00000005955	Snrpc	66	66.225	Dipodomys_ordii
ENSMALG00000001197	snrpc	51	89.333	ENSDORG00000029823	-	100	64.748	Dipodomys_ordii
ENSMALG00000001197	snrpc	98	60.256	ENSETEG00000011265	-	100	60.897	Echinops_telfairi
ENSMALG00000001197	snrpc	51	89.333	ENSETEG00000008268	-	100	63.462	Echinops_telfairi
ENSMALG00000001197	snrpc	100	56.000	ENSEBUG00000011445	snrpc	92	54.054	Eptatretus_burgeri
ENSMALG00000001197	snrpc	99	58.861	ENSEEUG00000014633	SNRPC	90	59.494	Erinaceus_europaeus
ENSMALG00000001197	snrpc	100	73.750	ENSELUG00000000815	SNRPC	100	68.750	Esox_lucius
ENSMALG00000001197	snrpc	100	78.882	ENSELUG00000020489	snrpc	100	57.303	Esox_lucius
ENSMALG00000001197	snrpc	76	96.396	ENSFHEG00000016667	snrpc	99	96.396	Fundulus_heteroclitus
ENSMALG00000001197	snrpc	99	96.552	ENSGMOG00000000090	snrpc	100	96.552	Gadus_morhua
ENSMALG00000001197	snrpc	100	96.622	ENSGAFG00000016115	snrpc	100	96.622	Gambusia_affinis
ENSMALG00000001197	snrpc	99	97.260	ENSGACG00000004899	snrpc	98	97.260	Gasterosteus_aculeatus
ENSMALG00000001197	snrpc	100	95.973	ENSHBUG00000011637	snrpc	100	95.973	Haplochromis_burtoni
ENSMALG00000001197	snrpc	98	66.460	ENSHGLG00000013981	SNRPC	100	66.667	Heterocephalus_glaber_female
ENSMALG00000001197	snrpc	100	64.474	ENSHGLG00000017741	-	100	62.500	Heterocephalus_glaber_female
ENSMALG00000001197	snrpc	79	63.492	ENSHGLG00000005871	-	100	65.306	Heterocephalus_glaber_female
ENSMALG00000001197	snrpc	100	64.474	ENSHGLG00100010786	-	100	62.500	Heterocephalus_glaber_male
ENSMALG00000001197	snrpc	98	66.460	ENSHGLG00100009478	SNRPC	100	66.667	Heterocephalus_glaber_male
ENSMALG00000001197	snrpc	100	66.667	ENSHGLG00100017764	-	100	63.522	Heterocephalus_glaber_male
ENSMALG00000001197	snrpc	100	95.918	ENSHCOG00000001596	snrpc	100	95.918	Hippocampus_comes
ENSMALG00000001197	snrpc	100	81.250	ENSIPUG00000024851	snrpc	100	69.375	Ictalurus_punctatus
ENSMALG00000001197	snrpc	100	96.622	ENSKMAG00000016356	snrpc	100	96.622	Kryptolebias_marmoratus
ENSMALG00000001197	snrpc	100	97.315	ENSLBEG00000023881	snrpc	100	97.315	Labrus_bergylta
ENSMALG00000001197	snrpc	100	70.000	ENSMMUG00000039415	-	100	68.667	Macaca_mulatta
ENSMALG00000001197	snrpc	100	65.854	ENSMMUG00000000869	-	100	67.532	Macaca_mulatta
ENSMALG00000001197	snrpc	100	61.006	ENSMMUG00000045425	-	100	61.250	Macaca_mulatta
ENSMALG00000001197	snrpc	97	58.904	ENSMLEG00000039724	-	81	55.556	Mandrillus_leucophaeus
ENSMALG00000001197	snrpc	97	60.645	ENSMLEG00000040224	-	89	62.179	Mandrillus_leucophaeus
ENSMALG00000001197	snrpc	100	97.297	ENSMAMG00000003857	snrpc	100	97.297	Mastacembelus_armatus
ENSMALG00000001197	snrpc	100	95.973	ENSMZEG00005002199	snrpc	100	95.973	Maylandia_zebra
ENSMALG00000001197	snrpc	100	71.429	ENSMICG00000009130	-	100	71.429	Microcebus_murinus
ENSMALG00000001197	snrpc	100	66.463	ENSMICG00000032183	-	100	67.500	Microcebus_murinus
ENSMALG00000001197	snrpc	100	63.816	ENSMICG00000036552	-	87	62.838	Microcebus_murinus
ENSMALG00000001197	snrpc	98	96.552	ENSMMOG00000013149	snrpc	100	96.552	Mola_mola
ENSMALG00000001197	snrpc	52	88.158	ENSMODG00000025263	-	100	66.667	Monodelphis_domestica
ENSMALG00000001197	snrpc	100	65.244	ENSMPUG00000003210	SNRPC	99	65.605	Mustela_putorius_furo
ENSMALG00000001197	snrpc	100	65.244	ENSMLUG00000002488	SNRPC	99	65.605	Myotis_lucifugus
ENSMALG00000001197	snrpc	97	66.250	ENSNLEG00000034810	SNRPC	100	66.667	Nomascus_leucogenys
ENSMALG00000001197	snrpc	100	66.463	ENSODEG00000020201	-	100	66.038	Octodon_degus
ENSMALG00000001197	snrpc	100	95.973	ENSONIG00000014757	snrpc	100	95.973	Oreochromis_niloticus
ENSMALG00000001197	snrpc	51	92.000	ENSOCUG00000026430	-	99	65.409	Oryctolagus_cuniculus
ENSMALG00000001197	snrpc	57	98.810	ENSORLG00000007308	snrpc	97	95.070	Oryzias_latipes
ENSMALG00000001197	snrpc	57	98.810	ENSORLG00020012607	SNRPC	97	94.406	Oryzias_latipes_hni
ENSMALG00000001197	snrpc	74	98.165	ENSOMEG00000012014	snrpc	86	93.289	Oryzias_melastigma
ENSMALG00000001197	snrpc	100	79.245	ENSOGAG00000026269	-	100	66.038	Otolemur_garnettii
ENSMALG00000001197	snrpc	97	66.250	ENSOGAG00000008755	-	88	65.605	Otolemur_garnettii
ENSMALG00000001197	snrpc	50	77.027	ENSOGAG00000028405	-	99	59.868	Otolemur_garnettii
ENSMALG00000001197	snrpc	100	65.244	ENSPPRG00000008647	-	100	66.667	Panthera_pardus
ENSMALG00000001197	snrpc	95	46.897	ENSPPRG00000016017	-	85	49.655	Panthera_pardus
ENSMALG00000001197	snrpc	100	65.244	ENSPTIG00000021867	-	100	66.667	Panthera_tigris_altaica
ENSMALG00000001197	snrpc	100	61.250	ENSPANG00000018228	-	94	60.000	Papio_anubis
ENSMALG00000001197	snrpc	57	85.106	ENSPKIG00000003136	snrpc	100	69.231	Paramormyrops_kingsleyae
ENSMALG00000001197	snrpc	100	66.667	ENSPKIG00000001671	SNRPC	100	64.151	Paramormyrops_kingsleyae
ENSMALG00000001197	snrpc	98	95.833	ENSPMGG00000022162	snrpc	100	95.833	Periophthalmus_magnuspinnatus
ENSMALG00000001197	snrpc	100	70.886	ENSPEMG00000002763	-	100	68.667	Peromyscus_maniculatus_bairdii
ENSMALG00000001197	snrpc	99	66.887	ENSPMAG00000000602	snrpc	98	63.333	Petromyzon_marinus
ENSMALG00000001197	snrpc	100	96.622	ENSPFOG00000015174	snrpc	100	96.622	Poecilia_formosa
ENSMALG00000001197	snrpc	100	96.622	ENSPLAG00000012311	snrpc	100	96.622	Poecilia_latipinna
ENSMALG00000001197	snrpc	100	96.622	ENSPMEG00000010274	snrpc	100	96.622	Poecilia_mexicana
ENSMALG00000001197	snrpc	99	71.918	ENSPREG00000013017	snrpc	79	82.192	Poecilia_reticulata
ENSMALG00000001197	snrpc	100	65.244	ENSPCAG00000016885	SNRPC	90	65.605	Procavia_capensis
ENSMALG00000001197	snrpc	100	65.244	ENSPCOG00000004904	SNRPC	100	66.667	Propithecus_coquereli
ENSMALG00000001197	snrpc	100	64.634	ENSPVAG00000015597	SNRPC	87	64.968	Pteropus_vampyrus
ENSMALG00000001197	snrpc	84	76.423	ENSPNYG00000004900	snrpc	100	77.241	Pundamilia_nyererei
ENSMALG00000001197	snrpc	100	78.616	ENSPNAG00000012799	snrpc	100	71.069	Pygocentrus_nattereri
ENSMALG00000001197	snrpc	100	65.244	ENSRBIG00000037567	-	100	66.667	Rhinopithecus_bieti
ENSMALG00000001197	snrpc	97	66.250	ENSRROG00000041300	SNRPC	100	66.667	Rhinopithecus_roxellana
ENSMALG00000001197	snrpc	97	66.250	ENSSBOG00000031528	-	100	66.667	Saimiri_boliviensis_boliviensis
ENSMALG00000001197	snrpc	98	66.667	ENSSBOG00000023189	-	90	58.442	Saimiri_boliviensis_boliviensis
ENSMALG00000001197	snrpc	98	64.583	ENSSBOG00000032882	-	93	64.583	Saimiri_boliviensis_boliviensis
ENSMALG00000001197	snrpc	52	88.158	ENSSHAG00000002972	-	100	66.667	Sarcophilus_harrisii
ENSMALG00000001197	snrpc	56	85.870	ENSSFOG00015022422	snrpc	100	67.949	Scleropages_formosus
ENSMALG00000001197	snrpc	57	80.851	ENSSFOG00015019150	snrpc	100	64.375	Scleropages_formosus
ENSMALG00000001197	snrpc	100	97.973	ENSSMAG00000008029	snrpc	100	97.973	Scophthalmus_maximus
ENSMALG00000001197	snrpc	100	97.973	ENSSDUG00000018895	snrpc	81	97.973	Seriola_dumerili
ENSMALG00000001197	snrpc	100	97.973	ENSSLDG00000005034	snrpc	100	97.973	Seriola_lalandi_dorsalis
ENSMALG00000001197	snrpc	100	97.973	ENSSPAG00000000914	snrpc	100	97.973	Stegastes_partitus
ENSMALG00000001197	snrpc	100	91.837	ENSTRUG00000021651	snrpc	100	91.837	Takifugu_rubripes
ENSMALG00000001197	snrpc	100	78.882	ENSTNIG00000018307	snrpc	100	61.798	Tetraodon_nigroviridis
ENSMALG00000001197	snrpc	97	66.883	ENSTBEG00000013022	-	99	63.871	Tupaia_belangeri
ENSMALG00000001197	snrpc	58	75.789	ENSTBEG00000015356	-	100	62.329	Tupaia_belangeri
ENSMALG00000001197	snrpc	100	65.244	ENSTTRG00000007827	SNRPC	86	65.605	Tursiops_truncatus
ENSMALG00000001197	snrpc	97	75.974	ENSVVUG00000010467	-	87	64.744	Vulpes_vulpes
ENSMALG00000001197	snrpc	100	64.151	ENSXETG00000024721	snrpc	100	65.625	Xenopus_tropicalis
ENSMALG00000001197	snrpc	98	93.750	ENSXCOG00000015871	-	100	93.750	Xiphophorus_couchianus
ENSMALG00000001197	snrpc	100	96.622	ENSXMAG00000017935	snrpc	100	96.622	Xiphophorus_maculatus