EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000004098 (Gene tree)
Gene ID: -
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 32214 bases
Position: chrKV884821.1:1533394-1565607
Accession: ZDB-GENE-040426-1203
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000005831	XRN_N	PF03159.18	4.3e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000005962	-	4887	-	ENSMALP00000005831	1628 (aa)	-	-

Gene Model

Click here to download ENSMALG00000004098's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000004098's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000004098	xrn1	100	57.414	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSMALG00000004098	xrn1	100	80.678	ENSAPOG00000000622	xrn1	100	80.254	Acanthochromis_polyacanthus
ENSMALG00000004098	xrn1	94	66.406	ENSAMEG00000012538	XRN1	94	66.589	Ailuropoda_melanoleuca
ENSMALG00000004098	xrn1	100	79.038	ENSACIG00000001057	xrn1	99	78.682	Amphilophus_citrinellus
ENSMALG00000004098	xrn1	100	79.242	ENSAOCG00000014097	xrn1	100	78.717	Amphiprion_ocellaris
ENSMALG00000004098	xrn1	100	79.444	ENSAPEG00000006620	xrn1	99	80.795	Amphiprion_percula
ENSMALG00000004098	xrn1	100	73.166	ENSATEG00000009752	xrn1	100	72.258	Anabas_testudineus
ENSMALG00000004098	xrn1	97	66.693	ENSAPLG00000004905	XRN1	94	66.614	Anas_platyrhynchos
ENSMALG00000004098	xrn1	98	67.237	ENSACAG00000004985	XRN1	94	66.770	Anolis_carolinensis
ENSMALG00000004098	xrn1	100	57.382	ENSANAG00000029013	XRN1	99	69.251	Aotus_nancymaae
ENSMALG00000004098	xrn1	100	78.003	ENSACLG00000004806	xrn1	99	77.655	Astatotilapia_calliptera
ENSMALG00000004098	xrn1	100	66.471	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSMALG00000004098	xrn1	100	58.107	ENSBTAG00000011524	XRN1	100	56.973	Bos_taurus
ENSMALG00000004098	xrn1	71	35.294	WBGene00012730	xrn-1	77	62.198	Caenorhabditis_elegans
ENSMALG00000004098	xrn1	100	56.905	ENSCJAG00000001872	XRN1	99	58.956	Callithrix_jacchus
ENSMALG00000004098	xrn1	98	67.189	ENSCAFG00000007783	XRN1	94	67.267	Canis_familiaris
ENSMALG00000004098	xrn1	98	67.189	ENSCAFG00020009120	XRN1	99	69.036	Canis_lupus_dingo
ENSMALG00000004098	xrn1	98	66.406	ENSCHIG00000019192	XRN1	94	66.588	Capra_hircus
ENSMALG00000004098	xrn1	100	57.708	ENSTSYG00000002705	XRN1	100	57.855	Carlito_syrichta
ENSMALG00000004098	xrn1	100	56.872	ENSCCAG00000034800	XRN1	99	71.111	Cebus_capucinus
ENSMALG00000004098	xrn1	100	57.616	ENSCATG00000041794	XRN1	100	58.007	Cercocebus_atys
ENSMALG00000004098	xrn1	100	57.208	ENSCLAG00000001451	XRN1	99	71.270	Chinchilla_lanigera
ENSMALG00000004098	xrn1	100	57.299	ENSCSAG00000011265	XRN1	100	57.530	Chlorocebus_sabaeus
ENSMALG00000004098	xrn1	54	93.506	ENSCHOG00000013961	-	53	95.833	Choloepus_hoffmanni
ENSMALG00000004098	xrn1	72	42.496	ENSCSAVG00000008584	-	100	42.113	Ciona_savignyi
ENSMALG00000004098	xrn1	100	57.367	ENSCANG00000037495	XRN1	99	71.111	Colobus_angolensis_palliatus
ENSMALG00000004098	xrn1	100	56.349	ENSCGRG00001019411	Xrn1	99	70.952	Cricetulus_griseus_chok1gshd
ENSMALG00000004098	xrn1	100	56.349	ENSCGRG00000012464	Xrn1	99	70.952	Cricetulus_griseus_crigri
ENSMALG00000004098	xrn1	100	69.871	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSMALG00000004098	xrn1	67	84.713	ENSCVAG00000013089	xrn1	99	84.804	Cyprinodon_variegatus
ENSMALG00000004098	xrn1	100	67.768	ENSDARG00000091652	xrn1	95	75.328	Danio_rerio
ENSMALG00000004098	xrn1	100	56.938	ENSDORG00000013833	Xrn1	100	57.635	Dipodomys_ordii
ENSMALG00000004098	xrn1	69	39.695	FBgn0020261	pcm	71	39.525	Drosophila_melanogaster
ENSMALG00000004098	xrn1	82	66.667	ENSETEG00000003978	XRN1	84	67.769	Echinops_telfairi
ENSMALG00000004098	xrn1	93	69.124	ENSEASG00005002687	XRN1	99	71.111	Equus_asinus_asinus
ENSMALG00000004098	xrn1	96	58.449	ENSECAG00000008301	XRN1	100	57.630	Equus_caballus
ENSMALG00000004098	xrn1	86	67.725	ENSEEUG00000011323	XRN1	87	67.725	Erinaceus_europaeus
ENSMALG00000004098	xrn1	100	69.359	ENSELUG00000000169	xrn1	100	68.890	Esox_lucius
ENSMALG00000004098	xrn1	100	53.598	ENSFCAG00000027589	XRN1	99	77.193	Felis_catus
ENSMALG00000004098	xrn1	98	67.988	ENSFALG00000007021	XRN1	94	67.910	Ficedula_albicollis
ENSMALG00000004098	xrn1	98	65.909	ENSFDAG00000020494	XRN1	99	71.111	Fukomys_damarensis
ENSMALG00000004098	xrn1	89	73.579	ENSGMOG00000006396	xrn1	87	73.495	Gadus_morhua
ENSMALG00000004098	xrn1	98	67.988	ENSGALG00000002706	XRN1	94	67.988	Gallus_gallus
ENSMALG00000004098	xrn1	100	73.750	ENSGACG00000014328	xrn1	100	72.898	Gasterosteus_aculeatus
ENSMALG00000004098	xrn1	92	66.951	ENSGAGG00000017535	XRN1	93	67.029	Gopherus_agassizii
ENSMALG00000004098	xrn1	100	56.842	ENSGGOG00000008047	XRN1	100	57.192	Gorilla_gorilla
ENSMALG00000004098	xrn1	100	77.394	ENSHBUG00000005908	xrn1	99	77.029	Haplochromis_burtoni
ENSMALG00000004098	xrn1	98	66.484	ENSHGLG00000014476	XRN1	99	71.270	Heterocephalus_glaber_female
ENSMALG00000004098	xrn1	98	66.484	ENSHGLG00100015130	XRN1	99	71.270	Heterocephalus_glaber_male
ENSMALG00000004098	xrn1	100	69.322	ENSHCOG00000014062	xrn1	99	68.831	Hippocampus_comes
ENSMALG00000004098	xrn1	100	65.676	ENSIPUG00000015229	xrn1	100	66.025	Ictalurus_punctatus
ENSMALG00000004098	xrn1	98	66.875	ENSSTOG00000013552	XRN1	99	71.111	Ictidomys_tridecemlineatus
ENSMALG00000004098	xrn1	98	56.308	ENSJJAG00000010863	Xrn1	99	70.033	Jaculus_jaculus
ENSMALG00000004098	xrn1	100	76.084	ENSKMAG00000021356	xrn1	100	75.904	Kryptolebias_marmoratus
ENSMALG00000004098	xrn1	100	76.564	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSMALG00000004098	xrn1	100	56.908	ENSLACG00000009020	XRN1	100	57.378	Latimeria_chalumnae
ENSMALG00000004098	xrn1	99	71.484	ENSLOCG00000007944	xrn1	95	71.638	Lepisosteus_oculatus
ENSMALG00000004098	xrn1	62	68.366	ENSLAFG00000015426	XRN1	99	69.036	Loxodonta_africana
ENSMALG00000004098	xrn1	100	57.616	ENSMFAG00000032599	XRN1	100	58.007	Macaca_fascicularis
ENSMALG00000004098	xrn1	100	57.616	ENSMMUG00000014038	XRN1	100	58.007	Macaca_mulatta
ENSMALG00000004098	xrn1	100	57.849	ENSMNEG00000034217	XRN1	100	57.949	Macaca_nemestrina
ENSMALG00000004098	xrn1	100	77.033	ENSMAMG00000013219	xrn1	99	76.464	Mastacembelus_armatus
ENSMALG00000004098	xrn1	100	78.062	ENSMZEG00005015099	xrn1	99	77.713	Maylandia_zebra
ENSMALG00000004098	xrn1	99	56.830	ENSMGAG00000006333	XRN1	100	56.634	Meleagris_gallopavo
ENSMALG00000004098	xrn1	100	57.389	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSMALG00000004098	xrn1	57	70.159	ENSMOCG00000008665	Xrn1	99	70.635	Microtus_ochrogaster
ENSMALG00000004098	xrn1	100	57.069	ENSMODG00000021236	XRN1	100	56.780	Monodelphis_domestica
ENSMALG00000004098	xrn1	96	70.494	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSMALG00000004098	xrn1	100	57.282	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSMALG00000004098	xrn1	100	57.044	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSMALG00000004098	xrn1	100	57.241	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSMALG00000004098	xrn1	96	58.091	ENSMPUG00000012040	XRN1	100	57.216	Mustela_putorius_furo
ENSMALG00000004098	xrn1	98	66.850	ENSMLUG00000016885	XRN1	94	66.614	Myotis_lucifugus
ENSMALG00000004098	xrn1	57	67.091	ENSNGAG00000023964	Xrn1	99	67.409	Nannospalax_galili
ENSMALG00000004098	xrn1	100	57.458	ENSNLEG00000004726	XRN1	100	57.746	Nomascus_leucogenys
ENSMALG00000004098	xrn1	62	95.876	ENSMEUG00000014473	-	60	96.117	Notamacropus_eugenii
ENSMALG00000004098	xrn1	69	65.693	ENSOPRG00000007337	-	63	65.693	Ochotona_princeps
ENSMALG00000004098	xrn1	99	82.931	ENSONIG00000016673	xrn1	99	81.126	Oreochromis_niloticus
ENSMALG00000004098	xrn1	92	54.829	ENSOANG00000006735	XRN1	100	54.403	Ornithorhynchus_anatinus
ENSMALG00000004098	xrn1	98	67.347	ENSOCUG00000001861	XRN1	94	67.347	Oryctolagus_cuniculus
ENSMALG00000004098	xrn1	100	76.051	ENSORLG00000013005	xrn1	98	75.627	Oryzias_latipes
ENSMALG00000004098	xrn1	100	75.759	ENSORLG00020005559	xrn1	100	75.335	Oryzias_latipes_hni
ENSMALG00000004098	xrn1	100	75.935	ENSORLG00015022523	xrn1	100	75.627	Oryzias_latipes_hsok
ENSMALG00000004098	xrn1	94	83.826	ENSOMEG00000015397	xrn1	99	83.826	Oryzias_melastigma
ENSMALG00000004098	xrn1	100	56.674	ENSOGAG00000000170	XRN1	100	56.821	Otolemur_garnettii
ENSMALG00000004098	xrn1	98	66.510	ENSOARG00000006343	XRN1	94	66.667	Ovis_aries
ENSMALG00000004098	xrn1	100	57.797	ENSPPAG00000010180	XRN1	100	57.910	Pan_paniscus
ENSMALG00000004098	xrn1	100	57.224	ENSPPRG00000007125	XRN1	100	57.377	Panthera_pardus
ENSMALG00000004098	xrn1	100	57.305	ENSPTIG00000021081	XRN1	100	57.377	Panthera_tigris_altaica
ENSMALG00000004098	xrn1	100	57.855	ENSPTRG00000015482	XRN1	100	58.083	Pan_troglodytes
ENSMALG00000004098	xrn1	100	57.558	ENSPANG00000010638	XRN1	100	57.949	Papio_anubis
ENSMALG00000004098	xrn1	100	56.725	ENSPSIG00000018050	XRN1	100	56.569	Pelodiscus_sinensis
ENSMALG00000004098	xrn1	57	85.503	ENSPMGG00000002648	xrn1	99	85.542	Periophthalmus_magnuspinnatus
ENSMALG00000004098	xrn1	57	70.317	ENSPEMG00000020610	Xrn1	99	70.952	Peromyscus_maniculatus_bairdii
ENSMALG00000004098	xrn1	65	76.437	ENSPMAG00000002975	xrn1	90	76.437	Petromyzon_marinus
ENSMALG00000004098	xrn1	98	66.876	ENSPCIG00000028735	XRN1	99	70.906	Phascolarctos_cinereus
ENSMALG00000004098	xrn1	90	78.604	ENSPFOG00000013932	xrn1	97	78.661	Poecilia_formosa
ENSMALG00000004098	xrn1	90	78.730	ENSPLAG00000021653	xrn1	97	78.788	Poecilia_latipinna
ENSMALG00000004098	xrn1	89	79.062	ENSPMEG00000003076	xrn1	95	79.062	Poecilia_mexicana
ENSMALG00000004098	xrn1	100	75.284	ENSPREG00000021147	xrn1	100	75.194	Poecilia_reticulata
ENSMALG00000004098	xrn1	100	57.250	ENSPPYG00000014172	XRN1	100	56.916	Pongo_abelii
ENSMALG00000004098	xrn1	85	62.550	ENSPCAG00000005638	XRN1	91	62.310	Procavia_capensis
ENSMALG00000004098	xrn1	100	56.986	ENSPCOG00000013089	XRN1	99	70.794	Propithecus_coquereli
ENSMALG00000004098	xrn1	87	67.070	ENSPVAG00000016265	XRN1	86	84.393	Pteropus_vampyrus
ENSMALG00000004098	xrn1	100	77.935	ENSPNYG00000010570	xrn1	99	77.640	Pundamilia_nyererei
ENSMALG00000004098	xrn1	100	66.061	ENSPNAG00000023531	xrn1	100	65.667	Pygocentrus_nattereri
ENSMALG00000004098	xrn1	100	57.127	ENSRNOG00000042951	Xrn1	100	57.062	Rattus_norvegicus
ENSMALG00000004098	xrn1	100	56.977	ENSRBIG00000041227	XRN1	100	57.496	Rhinopithecus_bieti
ENSMALG00000004098	xrn1	78	52.989	YGL173C	XRN1	78	52.989	Saccharomyces_cerevisiae
ENSMALG00000004098	xrn1	100	57.077	ENSSBOG00000029561	XRN1	100	57.788	Saimiri_boliviensis_boliviensis
ENSMALG00000004098	xrn1	97	65.946	ENSSHAG00000016207	XRN1	93	65.705	Sarcophilus_harrisii
ENSMALG00000004098	xrn1	100	65.855	ENSSFOG00015024211	xrn1	100	65.714	Scleropages_formosus
ENSMALG00000004098	xrn1	100	77.030	ENSSMAG00000016534	xrn1	99	81.839	Scophthalmus_maximus
ENSMALG00000004098	xrn1	90	85.902	ENSSDUG00000010306	xrn1	97	85.738	Seriola_dumerili
ENSMALG00000004098	xrn1	100	80.012	ENSSLDG00000021543	xrn1	99	84.256	Seriola_lalandi_dorsalis
ENSMALG00000004098	xrn1	61	63.440	ENSSARG00000007741	-	75	63.131	Sorex_araneus
ENSMALG00000004098	xrn1	98	67.291	ENSTGUG00000008498	XRN1	94	67.213	Taeniopygia_guttata
ENSMALG00000004098	xrn1	100	72.479	ENSTRUG00000004895	xrn1	93	80.674	Takifugu_rubripes
ENSMALG00000004098	xrn1	99	77.397	ENSTNIG00000017615	xrn1	100	69.766	Tetraodon_nigroviridis
ENSMALG00000004098	xrn1	82	83.333	ENSTBEG00000003256	XRN1	77	83.333	Tupaia_belangeri
ENSMALG00000004098	xrn1	100	54.083	ENSTTRG00000012914	XRN1	95	58.662	Tursiops_truncatus
ENSMALG00000004098	xrn1	98	64.996	ENSUAMG00000001608	XRN1	99	67.619	Ursus_americanus
ENSMALG00000004098	xrn1	98	66.719	ENSUMAG00000013625	XRN1	94	66.901	Ursus_maritimus
ENSMALG00000004098	xrn1	100	55.296	ENSVPAG00000004690	XRN1	100	55.392	Vicugna_pacos
ENSMALG00000004098	xrn1	94	67.189	ENSVVUG00000024461	XRN1	99	71.429	Vulpes_vulpes
ENSMALG00000004098	xrn1	100	58.015	ENSXETG00000000619	xrn1	97	84.409	Xenopus_tropicalis
ENSMALG00000004098	xrn1	100	75.986	ENSXCOG00000007917	xrn1	100	75.806	Xiphophorus_couchianus
ENSMALG00000004098	xrn1	92	85.894	ENSXMAG00000018320	xrn1	98	86.062	Xiphophorus_maculatus