EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000004250 (Gene tree)
Gene ID: 109965465
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 28381 bases
Position: chrKV884787.1:1901550-1929930
Accession: 109965465
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000005922	CMS1	PF14617.6	3.1e-32	1	1
ENSMALP00000005987	CMS1	PF14617.6	4.8e-32	1	1
ENSMALP00000005936	CMS1	PF14617.6	6.2e-32	1	1
ENSMALP00000005966	CMS1	PF14617.6	6.8e-32	1	1
ENSMALP00000005987	DEAD	PF00270.29	2.3e-08	1	1
ENSMALP00000005966	DEAD	PF00270.29	2.5e-08	1	1
ENSMALP00000005922	DEAD	PF00270.29	2.9e-08	1	1
ENSMALP00000005936	DEAD	PF00270.29	7.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000006068	-	2977	XM_020609499	ENSMALP00000005936	300 (aa)	XP_020465155	-
ENSMALT00000006054	-	2908	XM_020609503	ENSMALP00000005922	298 (aa)	XP_020465159	UPI0009B3A7BB
ENSMALT00000006119	-	2897	XM_020609504	ENSMALP00000005987	291 (aa)	XP_020465160	UPI0009B38374
ENSMALT00000006098	-	2945	-	ENSMALP00000005966	307 (aa)	-	-

Gene Model

Click here to download ENSMALG00000004250's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000004250's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000004250	cmss1	100	52.234	ENSG00000184220	CMSS1	98	67.500	Homo_sapiens
ENSMALG00000004250	cmss1	70	88.670	ENSAPOG00000010604	cmss1	96	76.718	Acanthochromis_polyacanthus
ENSMALG00000004250	cmss1	86	56.746	ENSAMEG00000004092	CMSS1	96	57.540	Ailuropoda_melanoleuca
ENSMALG00000004250	cmss1	88	70.703	ENSACIG00000021854	cmss1	97	72.763	Amphilophus_citrinellus
ENSMALG00000004250	cmss1	100	77.663	ENSAOCG00000013361	cmss1	100	79.795	Amphiprion_ocellaris
ENSMALG00000004250	cmss1	100	76.289	ENSAPEG00000005829	cmss1	100	79.181	Amphiprion_percula
ENSMALG00000004250	cmss1	100	76.027	ENSATEG00000008209	cmss1	100	77.816	Anabas_testudineus
ENSMALG00000004250	cmss1	78	62.281	ENSAPLG00000010542	CMSS1	98	62.281	Anas_platyrhynchos
ENSMALG00000004250	cmss1	96	54.448	ENSACAG00000011065	CMSS1	89	60.331	Anolis_carolinensis
ENSMALG00000004250	cmss1	100	51.203	ENSANAG00000023565	CMSS1	100	51.195	Aotus_nancymaae
ENSMALG00000004250	cmss1	100	77.055	ENSACLG00000027294	cmss1	100	78.157	Astatotilapia_calliptera
ENSMALG00000004250	cmss1	100	61.224	ENSAMXG00000002046	cmss1	100	62.245	Astyanax_mexicanus
ENSMALG00000004250	cmss1	100	51.203	ENSBTAG00000013663	CMSS1	100	52.397	Bos_taurus
ENSMALG00000004250	cmss1	100	52.218	ENSCJAG00000000610	CMSS1	100	52.234	Callithrix_jacchus
ENSMALG00000004250	cmss1	69	65.347	ENSCAFG00000009230	CMSS1	87	59.016	Canis_familiaris
ENSMALG00000004250	cmss1	69	65.347	ENSCAFG00020009464	-	88	59.016	Canis_lupus_dingo
ENSMALG00000004250	cmss1	69	64.356	ENSCAFG00020024156	-	63	64.356	Canis_lupus_dingo
ENSMALG00000004250	cmss1	84	56.557	ENSCHIG00000013003	CMSS1	87	57.377	Capra_hircus
ENSMALG00000004250	cmss1	81	59.072	ENSTSYG00000009266	CMSS1	90	59.916	Carlito_syrichta
ENSMALG00000004250	cmss1	75	51.142	ENSCAPG00000013584	CMSS1	87	55.376	Cavia_aperea
ENSMALG00000004250	cmss1	100	53.265	ENSCPOG00000014680	CMSS1	100	53.265	Cavia_porcellus
ENSMALG00000004250	cmss1	100	52.921	ENSCCAG00000034685	CMSS1	100	52.901	Cebus_capucinus
ENSMALG00000004250	cmss1	100	51.890	ENSCATG00000031980	CMSS1	100	52.234	Cercocebus_atys
ENSMALG00000004250	cmss1	78	60.088	ENSCLAG00000011241	CMSS1	97	60.965	Chinchilla_lanigera
ENSMALG00000004250	cmss1	69	63.861	ENSCSAG00000006024	CMSS1	82	63.861	Chlorocebus_sabaeus
ENSMALG00000004250	cmss1	100	40.550	ENSCHOG00000012098	CMSS1	100	41.237	Choloepus_hoffmanni
ENSMALG00000004250	cmss1	66	42.857	ENSCING00000014848	-	99	42.781	Ciona_intestinalis
ENSMALG00000004250	cmss1	100	51.890	ENSCANG00000031337	CMSS1	100	52.397	Colobus_angolensis_palliatus
ENSMALG00000004250	cmss1	100	50.685	ENSCGRG00001014305	Cmss1	100	50.685	Cricetulus_griseus_chok1gshd
ENSMALG00000004250	cmss1	78	58.772	ENSCGRG00000006722	Cmss1	79	61.881	Cricetulus_griseus_crigri
ENSMALG00000004250	cmss1	100	70.408	ENSCSEG00000004958	cmss1	100	71.429	Cynoglossus_semilaevis
ENSMALG00000004250	cmss1	100	71.672	ENSCVAG00000005039	cmss1	100	75.850	Cyprinodon_variegatus
ENSMALG00000004250	cmss1	100	63.051	ENSDARG00000112579	cmss1	100	64.068	Danio_rerio
ENSMALG00000004250	cmss1	69	64.851	ENSDNOG00000040418	CMSS1	73	64.851	Dasypus_novemcinctus
ENSMALG00000004250	cmss1	100	52.218	ENSDORG00000010461	Cmss1	100	51.505	Dipodomys_ordii
ENSMALG00000004250	cmss1	69	63.000	ENSEASG00005010966	CMSS1	92	63.366	Equus_asinus_asinus
ENSMALG00000004250	cmss1	69	62.500	ENSECAG00000015662	CMSS1	89	62.871	Equus_caballus
ENSMALG00000004250	cmss1	100	36.271	ENSEEUG00000007624	-	100	37.458	Erinaceus_europaeus
ENSMALG00000004250	cmss1	100	63.072	ENSELUG00000019459	cmss1	100	63.725	Esox_lucius
ENSMALG00000004250	cmss1	100	52.921	ENSFCAG00000044577	CMSS1	100	52.843	Felis_catus
ENSMALG00000004250	cmss1	69	63.861	ENSFALG00000005816	CMSS1	85	63.861	Ficedula_albicollis
ENSMALG00000004250	cmss1	69	64.851	ENSFDAG00000012577	CMSS1	89	64.851	Fukomys_damarensis
ENSMALG00000004250	cmss1	79	79.741	ENSFHEG00000012008	cmss1	95	79.741	Fundulus_heteroclitus
ENSMALG00000004250	cmss1	99	67.918	ENSGMOG00000016729	cmss1	100	69.097	Gadus_morhua
ENSMALG00000004250	cmss1	83	61.826	ENSGALG00000015267	CMSS1	77	66.337	Gallus_gallus
ENSMALG00000004250	cmss1	92	70.221	ENSGAFG00000021217	cmss1	98	70.677	Gambusia_affinis
ENSMALG00000004250	cmss1	99	68.056	ENSGACG00000002798	cmss1	100	70.139	Gasterosteus_aculeatus
ENSMALG00000004250	cmss1	96	53.237	ENSGAGG00000019861	CMSS1	79	65.842	Gopherus_agassizii
ENSMALG00000004250	cmss1	84	57.787	ENSGGOG00000014125	CMSS1	92	58.197	Gorilla_gorilla
ENSMALG00000004250	cmss1	100	77.320	ENSHBUG00000008431	cmss1	100	78.425	Haplochromis_burtoni
ENSMALG00000004250	cmss1	69	64.500	ENSHGLG00000019481	CMSS1	82	64.851	Heterocephalus_glaber_female
ENSMALG00000004250	cmss1	69	64.500	ENSHGLG00100010314	CMSS1	81	64.851	Heterocephalus_glaber_male
ENSMALG00000004250	cmss1	100	67.458	ENSHCOG00000003222	cmss1	100	67.458	Hippocampus_comes
ENSMALG00000004250	cmss1	100	63.356	ENSIPUG00000011591	cmss1	100	62.712	Ictalurus_punctatus
ENSMALG00000004250	cmss1	100	51.370	ENSSTOG00000019366	CMSS1	100	51.370	Ictidomys_tridecemlineatus
ENSMALG00000004250	cmss1	100	51.203	ENSJJAG00000014894	Cmss1	93	61.502	Jaculus_jaculus
ENSMALG00000004250	cmss1	92	62.313	ENSKMAG00000002390	cmss1	97	64.751	Kryptolebias_marmoratus
ENSMALG00000004250	cmss1	91	68.045	ENSLBEG00000006298	cmss1	98	69.202	Labrus_bergylta
ENSMALG00000004250	cmss1	69	65.347	ENSLACG00000009293	CMSS1	88	65.347	Latimeria_chalumnae
ENSMALG00000004250	cmss1	100	54.983	ENSLOCG00000009391	cmss1	100	54.983	Lepisosteus_oculatus
ENSMALG00000004250	cmss1	69	63.500	ENSLAFG00000017509	CMSS1	89	63.861	Loxodonta_africana
ENSMALG00000004250	cmss1	100	52.234	ENSMFAG00000045006	CMSS1	100	52.740	Macaca_fascicularis
ENSMALG00000004250	cmss1	100	51.890	ENSMMUG00000002939	CMSS1	100	52.397	Macaca_mulatta
ENSMALG00000004250	cmss1	100	52.234	ENSMNEG00000031315	CMSS1	100	52.740	Macaca_nemestrina
ENSMALG00000004250	cmss1	100	51.546	ENSMLEG00000033660	CMSS1	100	52.055	Mandrillus_leucophaeus
ENSMALG00000004250	cmss1	100	82.192	ENSMAMG00000017176	cmss1	100	82.877	Mastacembelus_armatus
ENSMALG00000004250	cmss1	100	77.055	ENSMZEG00005021886	cmss1	100	78.157	Maylandia_zebra
ENSMALG00000004250	cmss1	69	66.337	ENSMGAG00000014360	CMSS1	89	66.337	Meleagris_gallopavo
ENSMALG00000004250	cmss1	100	38.356	ENSMAUG00000020609	Cmss1	100	37.671	Mesocricetus_auratus
ENSMALG00000004250	cmss1	100	52.577	ENSMICG00000048977	CMSS1	100	53.608	Microcebus_murinus
ENSMALG00000004250	cmss1	100	52.189	ENSMOCG00000021937	Cmss1	100	52.055	Microtus_ochrogaster
ENSMALG00000004250	cmss1	89	70.155	ENSMMOG00000019794	cmss1	98	70.155	Mola_mola
ENSMALG00000004250	cmss1	86	54.924	ENSMODG00000002275	CMSS1	76	64.356	Monodelphis_domestica
ENSMALG00000004250	cmss1	100	53.425	MGP_CAROLIEiJ_G0020824	Cmss1	100	53.082	Mus_caroli
ENSMALG00000004250	cmss1	100	52.740	ENSMUSG00000022748	Cmss1	100	52.397	Mus_musculus
ENSMALG00000004250	cmss1	100	53.199	MGP_PahariEiJ_G0016524	Cmss1	100	53.265	Mus_pahari
ENSMALG00000004250	cmss1	100	52.443	MGP_SPRETEiJ_G0021724	Cmss1	100	52.055	Mus_spretus
ENSMALG00000004250	cmss1	68	64.322	ENSMPUG00000011324	CMSS1	90	59.746	Mustela_putorius_furo
ENSMALG00000004250	cmss1	84	57.317	ENSMLUG00000001131	CMSS1	92	58.130	Myotis_lucifugus
ENSMALG00000004250	cmss1	100	52.901	ENSNGAG00000020316	Cmss1	100	52.577	Nannospalax_galili
ENSMALG00000004250	cmss1	100	78.157	ENSNBRG00000003095	cmss1	100	78.498	Neolamprologus_brichardi
ENSMALG00000004250	cmss1	100	52.577	ENSNLEG00000034172	CMSS1	100	53.425	Nomascus_leucogenys
ENSMALG00000004250	cmss1	76	53.636	ENSMEUG00000014505	CMSS1	96	53.636	Notamacropus_eugenii
ENSMALG00000004250	cmss1	100	52.921	ENSOPRG00000002986	CMSS1	100	52.577	Ochotona_princeps
ENSMALG00000004250	cmss1	100	53.378	ENSODEG00000005226	-	100	54.296	Octodon_degus
ENSMALG00000004250	cmss1	100	45.578	ENSODEG00000001853	-	100	46.233	Octodon_degus
ENSMALG00000004250	cmss1	100	44.330	ENSODEG00000009446	-	100	43.643	Octodon_degus
ENSMALG00000004250	cmss1	100	50.172	ENSODEG00000003558	-	100	50.859	Octodon_degus
ENSMALG00000004250	cmss1	88	78.125	ENSONIG00000006678	cmss1	98	79.377	Oreochromis_niloticus
ENSMALG00000004250	cmss1	76	61.538	ENSOANG00000007529	CMSS1	87	64.356	Ornithorhynchus_anatinus
ENSMALG00000004250	cmss1	84	57.787	ENSOCUG00000025366	CMSS1	87	58.607	Oryctolagus_cuniculus
ENSMALG00000004250	cmss1	100	71.233	ENSORLG00000020340	cmss1	100	72.260	Oryzias_latipes
ENSMALG00000004250	cmss1	76	71.364	ENSORLG00020012235	cmss1	86	74.384	Oryzias_latipes_hni
ENSMALG00000004250	cmss1	88	64.231	ENSORLG00015015551	cmss1	97	64.615	Oryzias_latipes_hsok
ENSMALG00000004250	cmss1	100	71.918	ENSOMEG00000012555	cmss1	100	72.260	Oryzias_melastigma
ENSMALG00000004250	cmss1	69	64.356	ENSOGAG00000002045	CMSS1	89	64.356	Otolemur_garnettii
ENSMALG00000004250	cmss1	94	50.172	ENSOARG00000017899	CMSS1	83	57.143	Ovis_aries
ENSMALG00000004250	cmss1	84	57.787	ENSPPAG00000038515	CMSS1	89	58.197	Pan_paniscus
ENSMALG00000004250	cmss1	100	52.921	ENSPPRG00000016767	CMSS1	100	52.843	Panthera_pardus
ENSMALG00000004250	cmss1	100	52.577	ENSPTIG00000018274	CMSS1	100	52.508	Panthera_tigris_altaica
ENSMALG00000004250	cmss1	100	52.577	ENSPTRG00000015157	CMSS1	100	53.082	Pan_troglodytes
ENSMALG00000004250	cmss1	69	63.861	ENSPANG00000019980	CMSS1	80	63.861	Papio_anubis
ENSMALG00000004250	cmss1	96	64.184	ENSPKIG00000012609	cmss1	96	65.779	Paramormyrops_kingsleyae
ENSMALG00000004250	cmss1	75	65.297	ENSPSIG00000003849	CMSS1	95	65.297	Pelodiscus_sinensis
ENSMALG00000004250	cmss1	70	81.373	ENSPMGG00000010286	cmss1	88	81.373	Periophthalmus_magnuspinnatus
ENSMALG00000004250	cmss1	100	53.061	ENSPEMG00000016384	Cmss1	100	51.155	Peromyscus_maniculatus_bairdii
ENSMALG00000004250	cmss1	70	51.471	ENSPMAG00000001146	cmss1	99	51.724	Petromyzon_marinus
ENSMALG00000004250	cmss1	96	52.203	ENSPCIG00000015656	CMSS1	88	61.017	Phascolarctos_cinereus
ENSMALG00000004250	cmss1	100	73.720	ENSPFOG00000016849	cmss1	100	73.810	Poecilia_formosa
ENSMALG00000004250	cmss1	100	73.379	ENSPLAG00000008323	cmss1	100	73.469	Poecilia_latipinna
ENSMALG00000004250	cmss1	100	74.403	ENSPMEG00000021020	cmss1	100	76.190	Poecilia_mexicana
ENSMALG00000004250	cmss1	90	75.758	ENSPREG00000007618	cmss1	89	75.940	Poecilia_reticulata
ENSMALG00000004250	cmss1	100	52.234	ENSPPYG00000013606	CMSS1	100	52.740	Pongo_abelii
ENSMALG00000004250	cmss1	100	52.921	ENSPCOG00000020035	CMSS1	100	53.952	Propithecus_coquereli
ENSMALG00000004250	cmss1	100	45.270	ENSPVAG00000017031	CMSS1	100	45.017	Pteropus_vampyrus
ENSMALG00000004250	cmss1	91	78.195	ENSPNYG00000013428	cmss1	97	79.401	Pundamilia_nyererei
ENSMALG00000004250	cmss1	100	61.824	ENSPNAG00000007912	cmss1	100	62.034	Pygocentrus_nattereri
ENSMALG00000004250	cmss1	78	59.649	ENSRNOG00000027888	Cmss1	88	59.649	Rattus_norvegicus
ENSMALG00000004250	cmss1	100	51.546	ENSRBIG00000037931	CMSS1	100	52.055	Rhinopithecus_bieti
ENSMALG00000004250	cmss1	100	51.546	ENSRROG00000042910	CMSS1	100	52.055	Rhinopithecus_roxellana
ENSMALG00000004250	cmss1	69	64.851	ENSSBOG00000030980	CMSS1	77	64.851	Saimiri_boliviensis_boliviensis
ENSMALG00000004250	cmss1	69	65.347	ENSSHAG00000009321	CMSS1	80	65.347	Sarcophilus_harrisii
ENSMALG00000004250	cmss1	100	65.753	ENSSFOG00015001509	cmss1	100	65.986	Scleropages_formosus
ENSMALG00000004250	cmss1	100	76.370	ENSSMAG00000001653	cmss1	100	77.055	Scophthalmus_maximus
ENSMALG00000004250	cmss1	100	82.131	ENSSDUG00000007719	cmss1	100	82.877	Seriola_dumerili
ENSMALG00000004250	cmss1	90	77.122	ENSSLDG00000012300	cmss1	85	85.024	Seriola_lalandi_dorsalis
ENSMALG00000004250	cmss1	100	42.809	ENSSARG00000003584	CMSS1	100	43.299	Sorex_araneus
ENSMALG00000004250	cmss1	76	61.712	ENSSPUG00000003865	CMSS1	98	61.712	Sphenodon_punctatus
ENSMALG00000004250	cmss1	95	75.273	ENSSPAG00000019182	cmss1	82	73.239	Stegastes_partitus
ENSMALG00000004250	cmss1	100	51.890	ENSSSCG00000011970	CMSS1	100	52.740	Sus_scrofa
ENSMALG00000004250	cmss1	69	63.366	ENSTGUG00000013635	CMSS1	88	63.366	Taeniopygia_guttata
ENSMALG00000004250	cmss1	100	72.509	ENSTRUG00000015265	cmss1	100	72.509	Takifugu_rubripes
ENSMALG00000004250	cmss1	95	68.478	ENSTNIG00000002880	cmss1	99	65.505	Tetraodon_nigroviridis
ENSMALG00000004250	cmss1	100	35.739	ENSTBEG00000016722	CMSS1	100	35.739	Tupaia_belangeri
ENSMALG00000004250	cmss1	100	51.203	ENSTTRG00000001562	CMSS1	100	52.055	Tursiops_truncatus
ENSMALG00000004250	cmss1	69	64.851	ENSUAMG00000024209	CMSS1	91	64.851	Ursus_americanus
ENSMALG00000004250	cmss1	69	64.356	ENSUMAG00000001983	CMSS1	78	64.356	Ursus_maritimus
ENSMALG00000004250	cmss1	55	63.125	ENSVPAG00000000263	CMSS1	57	63.125	Vicugna_pacos
ENSMALG00000004250	cmss1	69	64.356	ENSVVUG00000007776	-	80	64.356	Vulpes_vulpes
ENSMALG00000004250	cmss1	69	65.000	ENSVVUG00000021647	-	98	59.426	Vulpes_vulpes
ENSMALG00000004250	cmss1	100	53.584	ENSXETG00000011858	cmss1	100	53.265	Xenopus_tropicalis
ENSMALG00000004250	cmss1	95	70.000	ENSXCOG00000018724	cmss1	90	72.556	Xiphophorus_couchianus
ENSMALG00000004250	cmss1	91	71.111	ENSXMAG00000011243	cmss1	99	72.556	Xiphophorus_maculatus