EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000006054 (Gene tree)
Gene ID: 109956830
Gene Symbol: -
Alias: -
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 3619 bases
Position: chrKV884710.1:2177530-2181148
Accession: 109956830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000008509	RRM_1	PF00076.22	5.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000008688	-	1554	XM_020594197	ENSMALP00000008509	260 (aa)	XP_020449853	UPI0009B4BBC7

Gene Model

Click here to download ENSMALG00000006054's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG
malb03015	mRNA surveillance pathway	KEGG
malb03040	Spliceosome	KEGG
malb05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000006054's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000006054	-	100	46.844	ENSMALG00000019408	ALYREF	100	53.214

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000006054	-	100	70.000	ENSAPOG00000000183	-	100	73.462	Acanthochromis_polyacanthus
ENSMALG00000006054	-	98	48.913	ENSACIG00000006351	alyref	97	51.773	Amphilophus_citrinellus
ENSMALG00000006054	-	98	65.428	ENSACIG00000020351	-	99	66.171	Amphilophus_citrinellus
ENSMALG00000006054	-	100	50.534	ENSAOCG00000014012	alyref	100	54.007	Amphiprion_ocellaris
ENSMALG00000006054	-	100	70.385	ENSAOCG00000019305	-	100	73.077	Amphiprion_ocellaris
ENSMALG00000006054	-	100	50.534	ENSAPEG00000014603	alyref	100	54.007	Amphiprion_percula
ENSMALG00000006054	-	100	71.154	ENSAPEG00000013527	-	100	72.692	Amphiprion_percula
ENSMALG00000006054	-	100	69.434	ENSATEG00000000382	-	100	70.943	Anabas_testudineus
ENSMALG00000006054	-	100	49.645	ENSATEG00000004307	alyref	100	52.595	Anabas_testudineus
ENSMALG00000006054	-	54	57.143	ENSAPLG00000014745	-	98	57.343	Anas_platyrhynchos
ENSMALG00000006054	-	100	65.672	ENSACLG00000010184	-	100	68.773	Astatotilapia_calliptera
ENSMALG00000006054	-	100	48.387	ENSACLG00000008432	alyref	100	51.773	Astatotilapia_calliptera
ENSMALG00000006054	-	100	50.000	ENSAMXG00000007359	alyref	100	51.020	Astyanax_mexicanus
ENSMALG00000006054	-	98	42.066	ENSCING00000013568	-	99	42.857	Ciona_intestinalis
ENSMALG00000006054	-	98	43.446	ENSCSAVG00000003324	-	99	45.255	Ciona_savignyi
ENSMALG00000006054	-	100	51.812	ENSCSEG00000017800	alyref	100	53.521	Cynoglossus_semilaevis
ENSMALG00000006054	-	100	52.158	ENSCVAG00000014869	alyref	100	53.521	Cyprinodon_variegatus
ENSMALG00000006054	-	100	65.779	ENSCVAG00000007789	-	100	65.399	Cyprinodon_variegatus
ENSMALG00000006054	-	100	49.485	ENSDARG00000077732	alyref	100	50.338	Danio_rerio
ENSMALG00000006054	-	99	36.806	FBgn0010774	Ref1	100	33.221	Drosophila_melanogaster
ENSMALG00000006054	-	100	38.346	ENSEBUG00000006305	alyref	100	42.105	Eptatretus_burgeri
ENSMALG00000006054	-	98	41.606	ENSEBUG00000008253	alyref	96	41.844	Eptatretus_burgeri
ENSMALG00000006054	-	100	50.178	ENSELUG00000017178	alyref	100	51.220	Esox_lucius
ENSMALG00000006054	-	98	54.545	ENSELUG00000008849	-	100	57.455	Esox_lucius
ENSMALG00000006054	-	62	60.366	ENSFALG00000011923	-	97	59.756	Ficedula_albicollis
ENSMALG00000006054	-	100	68.061	ENSFHEG00000004698	-	100	67.681	Fundulus_heteroclitus
ENSMALG00000006054	-	100	50.357	ENSFHEG00000019426	alyref	100	51.049	Fundulus_heteroclitus
ENSMALG00000006054	-	100	50.000	ENSGMOG00000009882	alyref	100	49.645	Gadus_morhua
ENSMALG00000006054	-	73	63.874	ENSGMOG00000013122	-	100	63.021	Gadus_morhua
ENSMALG00000006054	-	100	48.980	ENSGAFG00000006014	alyref	100	51.020	Gambusia_affinis
ENSMALG00000006054	-	100	63.118	ENSGAFG00000007573	-	100	65.019	Gambusia_affinis
ENSMALG00000006054	-	100	67.778	ENSHBUG00000001454	-	100	68.266	Haplochromis_burtoni
ENSMALG00000006054	-	100	48.387	ENSHBUG00000020196	alyref	100	51.773	Haplochromis_burtoni
ENSMALG00000006054	-	98	63.672	ENSHCOG00000012825	-	95	63.672	Hippocampus_comes
ENSMALG00000006054	-	100	52.265	ENSIPUG00000009469	alyref	100	52.941	Ictalurus_punctatus
ENSMALG00000006054	-	79	48.571	ENSSTOG00000016570	-	99	49.761	Ictidomys_tridecemlineatus
ENSMALG00000006054	-	100	50.883	ENSKMAG00000008912	alyref	100	52.249	Kryptolebias_marmoratus
ENSMALG00000006054	-	100	63.118	ENSKMAG00000006462	-	100	66.160	Kryptolebias_marmoratus
ENSMALG00000006054	-	98	52.344	ENSLBEG00000023118	alyref	88	56.371	Labrus_bergylta
ENSMALG00000006054	-	99	69.380	ENSLBEG00000012930	-	100	69.380	Labrus_bergylta
ENSMALG00000006054	-	100	70.330	ENSLBEG00000005387	-	100	71.014	Labrus_bergylta
ENSMALG00000006054	-	84	54.018	ENSLOCG00000013879	alyref	91	56.087	Lepisosteus_oculatus
ENSMALG00000006054	-	100	72.308	ENSMAMG00000005464	-	100	72.692	Mastacembelus_armatus
ENSMALG00000006054	-	100	52.518	ENSMAMG00000003034	alyref	100	53.521	Mastacembelus_armatus
ENSMALG00000006054	-	100	48.387	ENSMZEG00005008639	alyref	100	51.773	Maylandia_zebra
ENSMALG00000006054	-	100	64.552	ENSMZEG00005012096	-	100	67.658	Maylandia_zebra
ENSMALG00000006054	-	99	58.015	ENSMMOG00000007032	-	99	58.779	Mola_mola
ENSMALG00000006054	-	98	50.365	ENSMMOG00000012458	alyref	96	52.899	Mola_mola
ENSMALG00000006054	-	97	45.926	ENSMLUG00000009247	-	98	45.926	Myotis_lucifugus
ENSMALG00000006054	-	100	44.828	ENSMLUG00000004098	-	100	47.464	Myotis_lucifugus
ENSMALG00000006054	-	100	44.366	ENSMLUG00000006521	-	100	45.196	Myotis_lucifugus
ENSMALG00000006054	-	97	40.942	ENSMLUG00000022178	-	98	42.545	Myotis_lucifugus
ENSMALG00000006054	-	100	45.936	ENSMLUG00000014372	-	100	46.290	Myotis_lucifugus
ENSMALG00000006054	-	97	42.958	ENSMLUG00000022467	-	98	43.060	Myotis_lucifugus
ENSMALG00000006054	-	97	42.606	ENSMLUG00000030671	-	98	42.500	Myotis_lucifugus
ENSMALG00000006054	-	100	49.231	ENSNGAG00000022014	-	100	51.154	Nannospalax_galili
ENSMALG00000006054	-	100	48.043	ENSNBRG00000001747	alyref	100	51.056	Neolamprologus_brichardi
ENSMALG00000006054	-	100	65.299	ENSNBRG00000017460	-	100	68.401	Neolamprologus_brichardi
ENSMALG00000006054	-	100	48.432	ENSONIG00000019434	alyref	100	51.399	Oreochromis_niloticus
ENSMALG00000006054	-	100	69.173	ENSONIG00000003296	-	100	69.549	Oreochromis_niloticus
ENSMALG00000006054	-	98	55.629	ENSORLG00000001620	-	88	56.954	Oryzias_latipes
ENSMALG00000006054	-	100	66.794	ENSORLG00020015673	-	99	68.966	Oryzias_latipes_hni
ENSMALG00000006054	-	100	48.754	ENSORLG00020011942	alyref	100	51.027	Oryzias_latipes_hni
ENSMALG00000006054	-	100	67.176	ENSORLG00015015143	-	99	68.966	Oryzias_latipes_hsok
ENSMALG00000006054	-	100	49.104	ENSORLG00015022664	alyref	100	51.379	Oryzias_latipes_hsok
ENSMALG00000006054	-	100	63.740	ENSOMEG00000007158	-	99	64.885	Oryzias_melastigma
ENSMALG00000006054	-	100	48.780	ENSOMEG00000019176	alyref	100	50.690	Oryzias_melastigma
ENSMALG00000006054	-	73	56.250	ENSPPAG00000036403	-	68	58.639	Pan_paniscus
ENSMALG00000006054	-	98	54.167	ENSPKIG00000006233	-	80	54.307	Paramormyrops_kingsleyae
ENSMALG00000006054	-	100	49.492	ENSPKIG00000007070	alyref	100	52.128	Paramormyrops_kingsleyae
ENSMALG00000006054	-	98	52.206	ENSPMGG00000016600	alyref	90	52.708	Periophthalmus_magnuspinnatus
ENSMALG00000006054	-	64	61.176	ENSPMGG00000012994	-	93	58.721	Periophthalmus_magnuspinnatus
ENSMALG00000006054	-	100	52.308	ENSPEMG00000016628	-	100	50.769	Peromyscus_maniculatus_bairdii
ENSMALG00000006054	-	100	67.681	ENSPFOG00000017094	-	100	67.300	Poecilia_formosa
ENSMALG00000006054	-	100	48.797	ENSPFOG00000022825	alyref	99	50.676	Poecilia_formosa
ENSMALG00000006054	-	100	48.966	ENSPLAG00000006948	alyref	100	50.847	Poecilia_latipinna
ENSMALG00000006054	-	100	67.681	ENSPLAG00000014380	-	100	67.300	Poecilia_latipinna
ENSMALG00000006054	-	100	67.681	ENSPMEG00000023039	-	100	67.300	Poecilia_mexicana
ENSMALG00000006054	-	100	48.797	ENSPMEG00000003547	alyref	100	50.676	Poecilia_mexicana
ENSMALG00000006054	-	100	48.621	ENSPREG00000015795	alyref	100	50.508	Poecilia_reticulata
ENSMALG00000006054	-	100	67.045	ENSPREG00000003649	-	100	66.667	Poecilia_reticulata
ENSMALG00000006054	-	100	48.387	ENSPNYG00000017498	alyref	100	51.773	Pundamilia_nyererei
ENSMALG00000006054	-	98	65.399	ENSPNYG00000002879	-	98	66.415	Pundamilia_nyererei
ENSMALG00000006054	-	100	45.791	ENSPNAG00000002531	alyref	100	50.345	Pygocentrus_nattereri
ENSMALG00000006054	-	75	57.360	ENSSBOG00000030924	-	84	59.184	Saimiri_boliviensis_boliviensis
ENSMALG00000006054	-	99	45.736	ENSSHAG00000000609	-	100	45.736	Sarcophilus_harrisii
ENSMALG00000006054	-	99	40.351	ENSSHAG00000012866	-	100	43.431	Sarcophilus_harrisii
ENSMALG00000006054	-	84	57.466	ENSSFOG00015003923	alyref	75	58.772	Scleropages_formosus
ENSMALG00000006054	-	74	57.292	ENSSFOG00015003678	alyref	83	57.653	Scleropages_formosus
ENSMALG00000006054	-	100	76.538	ENSSMAG00000011169	-	100	77.778	Scophthalmus_maximus
ENSMALG00000006054	-	100	51.418	ENSSMAG00000009283	alyref	100	51.930	Scophthalmus_maximus
ENSMALG00000006054	-	100	50.178	ENSSDUG00000016158	alyref	100	53.659	Seriola_dumerili
ENSMALG00000006054	-	100	48.029	ENSSLDG00000017803	alyref	100	53.472	Seriola_lalandi_dorsalis
ENSMALG00000006054	-	98	72.941	ENSSPAG00000017028	-	96	73.725	Stegastes_partitus
ENSMALG00000006054	-	100	62.030	ENSTRUG00000003051	-	100	60.000	Takifugu_rubripes
ENSMALG00000006054	-	100	47.917	ENSTNIG00000011595	alyref	100	53.788	Tetraodon_nigroviridis
ENSMALG00000006054	-	100	61.450	ENSTNIG00000014136	-	100	60.076	Tetraodon_nigroviridis
ENSMALG00000006054	-	76	57.360	ENSVVUG00000000272	-	82	58.673	Vulpes_vulpes
ENSMALG00000006054	-	98	48.443	ENSXCOG00000018047	alyref	98	50.690	Xiphophorus_couchianus
ENSMALG00000006054	-	98	48.443	ENSXMAG00000012218	alyref	98	50.690	Xiphophorus_maculatus
ENSMALG00000006054	-	100	66.920	ENSXMAG00000018086	-	100	66.540	Xiphophorus_maculatus