EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000008025 (Gene tree)
Gene ID: 109957001
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 7095 bases
Position: chrKV884711.1:725573-732667
Accession: 109957001
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000011292	SMN	PF06003.12	3.3e-109	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000011533	-	3934	XM_020594558	ENSMALP00000011292	284 (aa)	XP_020450214	UPI0009B38108

Gene Model

Click here to download ENSMALG00000008025's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000008025's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000008025	smn1	94	51.439	ENSG00000172062	SMN1	93	48.905	Homo_sapiens
ENSMALG00000008025	smn1	94	51.439	ENSG00000205571	SMN2	93	48.905	Homo_sapiens
ENSMALG00000008025	smn1	100	83.099	ENSAPOG00000011324	smn1	100	84.859	Acanthochromis_polyacanthus
ENSMALG00000008025	smn1	94	52.536	ENSAMEG00000003316	-	89	50.538	Ailuropoda_melanoleuca
ENSMALG00000008025	smn1	93	78.409	ENSACIG00000019772	-	99	78.409	Amphilophus_citrinellus
ENSMALG00000008025	smn1	60	80.000	ENSACIG00000007598	smn1	94	80.588	Amphilophus_citrinellus
ENSMALG00000008025	smn1	100	84.507	ENSAOCG00000024444	smn1	100	85.915	Amphiprion_ocellaris
ENSMALG00000008025	smn1	100	84.507	ENSAPEG00000016504	smn1	100	85.915	Amphiprion_percula
ENSMALG00000008025	smn1	95	85.556	ENSATEG00000002182	smn1	82	85.556	Anabas_testudineus
ENSMALG00000008025	smn1	69	45.455	ENSAPLG00000010912	-	96	44.712	Anas_platyrhynchos
ENSMALG00000008025	smn1	98	52.448	ENSACAG00000010017	-	96	50.526	Anolis_carolinensis
ENSMALG00000008025	smn1	96	51.034	ENSANAG00000032133	-	95	49.653	Aotus_nancymaae
ENSMALG00000008025	smn1	99	80.634	ENSACLG00000007308	smn1	94	80.634	Astatotilapia_calliptera
ENSMALG00000008025	smn1	100	60.279	ENSAMXG00000013884	smn1	100	65.972	Astyanax_mexicanus
ENSMALG00000008025	smn1	94	52.536	ENSBTAG00000005743	SMN2	93	51.812	Bos_taurus
ENSMALG00000008025	smn1	94	51.254	ENSCJAG00000016290	-	91	51.079	Callithrix_jacchus
ENSMALG00000008025	smn1	94	50.357	ENSCAFG00000007812	SMN	92	50.549	Canis_familiaris
ENSMALG00000008025	smn1	94	50.357	ENSCAFG00020019229	-	86	50.549	Canis_lupus_dingo
ENSMALG00000008025	smn1	94	52.708	ENSCHIG00000015559	-	91	51.449	Capra_hircus
ENSMALG00000008025	smn1	94	51.471	ENSTSYG00000012058	-	93	50.360	Carlito_syrichta
ENSMALG00000008025	smn1	77	45.852	ENSCAPG00000011021	-	88	45.366	Cavia_aperea
ENSMALG00000008025	smn1	95	51.228	ENSCPOG00000012328	-	93	49.822	Cavia_porcellus
ENSMALG00000008025	smn1	95	51.079	ENSCPOG00000036973	-	92	50.179	Cavia_porcellus
ENSMALG00000008025	smn1	94	45.693	ENSCCAG00000018127	-	91	50.360	Cebus_capucinus
ENSMALG00000008025	smn1	94	51.071	ENSCATG00000037002	-	93	49.270	Cercocebus_atys
ENSMALG00000008025	smn1	94	50.181	ENSCLAG00000000284	-	92	49.281	Chinchilla_lanigera
ENSMALG00000008025	smn1	94	50.730	ENSCSAG00000015688	-	91	51.460	Chlorocebus_sabaeus
ENSMALG00000008025	smn1	50	61.644	ENSCHOG00000007346	-	68	56.140	Choloepus_hoffmanni
ENSMALG00000008025	smn1	96	50.178	ENSCPBG00000010968	-	97	49.813	Chrysemys_picta_bellii
ENSMALG00000008025	smn1	94	52.536	ENSCANG00000038242	-	93	50.000	Colobus_angolensis_palliatus
ENSMALG00000008025	smn1	92	48.148	ENSCANG00000033324	-	89	48.897	Colobus_angolensis_palliatus
ENSMALG00000008025	smn1	94	52.963	ENSCGRG00001017959	-	92	51.852	Cricetulus_griseus_chok1gshd
ENSMALG00000008025	smn1	94	40.672	ENSCGRG00001016998	-	91	40.146	Cricetulus_griseus_chok1gshd
ENSMALG00000008025	smn1	94	52.963	ENSCGRG00000007698	Smn1	92	51.852	Cricetulus_griseus_crigri
ENSMALG00000008025	smn1	96	69.014	ENSCSEG00000015227	smn1	99	69.474	Cynoglossus_semilaevis
ENSMALG00000008025	smn1	100	80.986	ENSCVAG00000007498	smn1	100	80.986	Cyprinodon_variegatus
ENSMALG00000008025	smn1	100	61.324	ENSDARG00000018494	smn1	100	62.976	Danio_rerio
ENSMALG00000008025	smn1	82	48.133	ENSDNOG00000007283	-	86	48.182	Dasypus_novemcinctus
ENSMALG00000008025	smn1	50	55.172	ENSDNOG00000045949	-	70	51.852	Dasypus_novemcinctus
ENSMALG00000008025	smn1	95	42.182	ENSDORG00000007082	Smn1	91	41.455	Dipodomys_ordii
ENSMALG00000008025	smn1	61	44.828	ENSETEG00000001406	-	87	45.699	Echinops_telfairi
ENSMALG00000008025	smn1	52	51.351	ENSEASG00005018000	-	89	45.385	Equus_asinus_asinus
ENSMALG00000008025	smn1	94	50.730	ENSECAG00000015215	-	92	50.182	Equus_caballus
ENSMALG00000008025	smn1	88	49.242	ENSEEUG00000015777	-	100	48.828	Erinaceus_europaeus
ENSMALG00000008025	smn1	100	66.549	ENSELUG00000018067	smn1	100	65.845	Esox_lucius
ENSMALG00000008025	smn1	94	51.838	ENSFCAG00000028292	SMN	92	51.648	Felis_catus
ENSMALG00000008025	smn1	95	53.191	ENSFALG00000012320	-	95	50.714	Ficedula_albicollis
ENSMALG00000008025	smn1	94	46.975	ENSFDAG00000017683	-	92	46.403	Fukomys_damarensis
ENSMALG00000008025	smn1	97	82.310	ENSFHEG00000018508	smn1	100	82.310	Fundulus_heteroclitus
ENSMALG00000008025	smn1	100	65.141	ENSGMOG00000017279	smn1	98	65.493	Gadus_morhua
ENSMALG00000008025	smn1	95	50.896	ENSGALG00000002430	SMN	97	50.388	Gallus_gallus
ENSMALG00000008025	smn1	100	82.746	ENSGAFG00000009501	smn1	100	82.746	Gambusia_affinis
ENSMALG00000008025	smn1	100	81.053	ENSGACG00000010584	smn1	97	79.298	Gasterosteus_aculeatus
ENSMALG00000008025	smn1	98	32.132	ENSGAGG00000013639	-	95	36.842	Gopherus_agassizii
ENSMALG00000008025	smn1	96	51.254	ENSGAGG00000011374	-	95	51.773	Gopherus_agassizii
ENSMALG00000008025	smn1	54	60.759	ENSGGOG00000026704	-	85	55.556	Gorilla_gorilla
ENSMALG00000008025	smn1	91	48.864	ENSGGOG00000003872	-	93	47.909	Gorilla_gorilla
ENSMALG00000008025	smn1	100	83.451	ENSHBUG00000013987	smn1	100	83.451	Haplochromis_burtoni
ENSMALG00000008025	smn1	94	48.000	ENSHGLG00000001905	-	93	47.653	Heterocephalus_glaber_female
ENSMALG00000008025	smn1	94	50.000	ENSHGLG00000001018	-	91	47.826	Heterocephalus_glaber_female
ENSMALG00000008025	smn1	94	50.000	ENSHGLG00100011252	-	91	47.826	Heterocephalus_glaber_male
ENSMALG00000008025	smn1	92	47.955	ENSHGLG00100018676	-	96	47.426	Heterocephalus_glaber_male
ENSMALG00000008025	smn1	94	75.940	ENSHCOG00000017136	smn1	89	75.564	Hippocampus_comes
ENSMALG00000008025	smn1	100	62.718	ENSIPUG00000012580	smn1	89	64.014	Ictalurus_punctatus
ENSMALG00000008025	smn1	91	51.698	ENSSTOG00000012288	-	93	51.145	Ictidomys_tridecemlineatus
ENSMALG00000008025	smn1	50	50.350	ENSJJAG00000014853	-	86	48.214	Jaculus_jaculus
ENSMALG00000008025	smn1	100	80.836	ENSKMAG00000007239	smn1	100	80.836	Kryptolebias_marmoratus
ENSMALG00000008025	smn1	100	82.394	ENSLBEG00000022550	smn1	100	82.394	Labrus_bergylta
ENSMALG00000008025	smn1	97	34.014	ENSLACG00000009808	-	95	34.448	Latimeria_chalumnae
ENSMALG00000008025	smn1	100	54.362	ENSLOCG00000011339	smn1	100	58.562	Lepisosteus_oculatus
ENSMALG00000008025	smn1	97	32.624	ENSLOCG00000000801	-	98	30.690	Lepisosteus_oculatus
ENSMALG00000008025	smn1	94	50.909	ENSLAFG00000003425	-	99	38.636	Loxodonta_africana
ENSMALG00000008025	smn1	94	51.095	ENSMFAG00000031523	SMN1	95	49.084	Macaca_fascicularis
ENSMALG00000008025	smn1	94	48.561	ENSMFAG00000008812	-	91	45.985	Macaca_fascicularis
ENSMALG00000008025	smn1	94	48.201	ENSMMUG00000030594	-	91	44.286	Macaca_mulatta
ENSMALG00000008025	smn1	94	51.095	ENSMMUG00000020214	SMN1	93	50.000	Macaca_mulatta
ENSMALG00000008025	smn1	94	51.095	ENSMNEG00000035094	-	93	50.000	Macaca_nemestrina
ENSMALG00000008025	smn1	74	40.271	ENSMNEG00000036423	-	78	36.893	Macaca_nemestrina
ENSMALG00000008025	smn1	94	50.725	ENSMLEG00000041902	-	93	50.000	Mandrillus_leucophaeus
ENSMALG00000008025	smn1	100	88.380	ENSMAMG00000011034	smn1	100	88.380	Mastacembelus_armatus
ENSMALG00000008025	smn1	100	83.803	ENSMZEG00005013634	smn1	100	83.803	Maylandia_zebra
ENSMALG00000008025	smn1	69	50.000	ENSMGAG00000008889	-	95	45.960	Meleagris_gallopavo
ENSMALG00000008025	smn1	94	50.746	ENSMAUG00000010262	Smn1	92	51.481	Mesocricetus_auratus
ENSMALG00000008025	smn1	54	58.861	ENSMICG00000034708	-	81	54.444	Microcebus_murinus
ENSMALG00000008025	smn1	94	52.593	ENSMOCG00000017833	Smn1	92	52.593	Microtus_ochrogaster
ENSMALG00000008025	smn1	96	70.803	ENSMMOG00000005504	smn1	98	68.231	Mola_mola
ENSMALG00000008025	smn1	94	50.694	ENSMODG00000001436	-	91	49.451	Monodelphis_domestica
ENSMALG00000008025	smn1	94	51.625	MGP_CAROLIEiJ_G0018836	Smn1	92	51.838	Mus_caroli
ENSMALG00000008025	smn1	94	51.625	ENSMUSG00000021645	Smn1	92	51.838	Mus_musculus
ENSMALG00000008025	smn1	94	53.333	MGP_PahariEiJ_G0015911	Smn1	92	52.878	Mus_pahari
ENSMALG00000008025	smn1	94	51.625	MGP_SPRETEiJ_G0019718	Smn1	92	51.838	Mus_spretus
ENSMALG00000008025	smn1	92	52.030	ENSMPUG00000014470	-	93	51.301	Mustela_putorius_furo
ENSMALG00000008025	smn1	94	51.812	ENSMLUG00000010603	-	88	50.896	Myotis_lucifugus
ENSMALG00000008025	smn1	95	51.087	ENSNGAG00000019833	Smn1	93	50.530	Nannospalax_galili
ENSMALG00000008025	smn1	100	85.211	ENSNBRG00000023000	smn1	100	85.211	Neolamprologus_brichardi
ENSMALG00000008025	smn1	94	51.429	ENSNLEG00000004454	-	93	49.270	Nomascus_leucogenys
ENSMALG00000008025	smn1	67	47.549	ENSMEUG00000011393	-	88	43.902	Notamacropus_eugenii
ENSMALG00000008025	smn1	88	48.485	ENSOPRG00000002015	-	100	49.808	Ochotona_princeps
ENSMALG00000008025	smn1	91	50.558	ENSODEG00000015976	-	91	50.741	Octodon_degus
ENSMALG00000008025	smn1	100	84.155	ENSONIG00000011799	smn1	100	84.155	Oreochromis_niloticus
ENSMALG00000008025	smn1	94	44.407	ENSOANG00000001626	-	95	48.364	Ornithorhynchus_anatinus
ENSMALG00000008025	smn1	94	47.222	ENSOCUG00000026649	-	92	49.123	Oryctolagus_cuniculus
ENSMALG00000008025	smn1	94	43.165	ENSOCUG00000025183	-	92	41.455	Oryctolagus_cuniculus
ENSMALG00000008025	smn1	94	49.291	ENSOCUG00000017097	-	91	48.070	Oryctolagus_cuniculus
ENSMALG00000008025	smn1	100	80.986	ENSORLG00000010552	smn1	100	80.986	Oryzias_latipes
ENSMALG00000008025	smn1	100	74.737	ENSORLG00020007936	smn1	100	74.035	Oryzias_latipes_hni
ENSMALG00000008025	smn1	100	80.986	ENSORLG00015022425	smn1	100	80.986	Oryzias_latipes_hsok
ENSMALG00000008025	smn1	100	80.634	ENSOMEG00000007824	smn1	100	80.634	Oryzias_melastigma
ENSMALG00000008025	smn1	91	44.649	ENSOGAG00000031414	-	92	43.796	Otolemur_garnettii
ENSMALG00000008025	smn1	94	51.986	ENSOARG00000005425	-	97	50.725	Ovis_aries
ENSMALG00000008025	smn1	94	51.439	ENSPPAG00000036640	-	93	48.905	Pan_paniscus
ENSMALG00000008025	smn1	94	51.838	ENSPPRG00000005575	-	92	51.648	Panthera_pardus
ENSMALG00000008025	smn1	94	52.574	ENSPTIG00000007745	-	92	51.273	Panthera_tigris_altaica
ENSMALG00000008025	smn1	94	48.897	ENSPTRG00000016955	-	93	48.905	Pan_troglodytes
ENSMALG00000008025	smn1	94	50.916	ENSPANG00000013601	-	91	50.357	Papio_anubis
ENSMALG00000008025	smn1	94	49.281	ENSPANG00000000253	-	90	48.897	Papio_anubis
ENSMALG00000008025	smn1	100	58.042	ENSPKIG00000011096	smn1	100	57.692	Paramormyrops_kingsleyae
ENSMALG00000008025	smn1	92	50.916	ENSPSIG00000014787	-	86	50.903	Pelodiscus_sinensis
ENSMALG00000008025	smn1	100	71.429	ENSPMGG00000012285	smn1	97	70.000	Periophthalmus_magnuspinnatus
ENSMALG00000008025	smn1	92	42.491	ENSPMAG00000005004	smn1	91	38.148	Petromyzon_marinus
ENSMALG00000008025	smn1	94	52.747	ENSPCIG00000025764	-	93	49.084	Phascolarctos_cinereus
ENSMALG00000008025	smn1	100	82.042	ENSPFOG00000007786	smn1	100	82.042	Poecilia_formosa
ENSMALG00000008025	smn1	100	82.042	ENSPLAG00000012071	smn1	100	82.042	Poecilia_latipinna
ENSMALG00000008025	smn1	100	82.042	ENSPMEG00000017085	smn1	100	82.042	Poecilia_mexicana
ENSMALG00000008025	smn1	100	82.042	ENSPREG00000005824	smn1	100	82.042	Poecilia_reticulata
ENSMALG00000008025	smn1	59	73.077	ENSPPYG00000019189	-	83	44.118	Pongo_abelii
ENSMALG00000008025	smn1	92	50.185	ENSPPYG00000015533	-	95	49.438	Pongo_abelii
ENSMALG00000008025	smn1	91	50.746	ENSPCAG00000004187	-	97	49.635	Procavia_capensis
ENSMALG00000008025	smn1	72	44.928	ENSPCOG00000022307	-	88	42.326	Propithecus_coquereli
ENSMALG00000008025	smn1	94	52.174	ENSPVAG00000005977	-	91	51.648	Pteropus_vampyrus
ENSMALG00000008025	smn1	100	85.211	ENSPNYG00000014148	smn1	100	85.211	Pundamilia_nyererei
ENSMALG00000008025	smn1	100	66.207	ENSPNAG00000014007	smn1	87	65.744	Pygocentrus_nattereri
ENSMALG00000008025	smn1	94	51.087	ENSRNOG00000018067	Smn1	92	51.481	Rattus_norvegicus
ENSMALG00000008025	smn1	92	46.360	ENSRBIG00000036775	-	88	44.361	Rhinopithecus_bieti
ENSMALG00000008025	smn1	94	50.730	ENSRBIG00000037052	-	91	49.643	Rhinopithecus_bieti
ENSMALG00000008025	smn1	94	50.730	ENSRROG00000039399	-	93	49.270	Rhinopithecus_roxellana
ENSMALG00000008025	smn1	94	46.296	ENSRROG00000031088	-	90	45.487	Rhinopithecus_roxellana
ENSMALG00000008025	smn1	94	53.455	ENSSBOG00000011665	-	91	51.228	Saimiri_boliviensis_boliviensis
ENSMALG00000008025	smn1	51	58.000	ENSSBOG00000020112	-	60	51.124	Saimiri_boliviensis_boliviensis
ENSMALG00000008025	smn1	96	52.465	ENSSHAG00000001499	-	97	46.520	Sarcophilus_harrisii
ENSMALG00000008025	smn1	100	60.137	ENSSFOG00015015507	smn1	100	61.592	Scleropages_formosus
ENSMALG00000008025	smn1	100	79.930	ENSSMAG00000007922	smn1	100	82.042	Scophthalmus_maximus
ENSMALG00000008025	smn1	100	88.732	ENSSDUG00000018533	smn1	100	88.732	Seriola_dumerili
ENSMALG00000008025	smn1	100	89.085	ENSSLDG00000021135	smn1	100	89.085	Seriola_lalandi_dorsalis
ENSMALG00000008025	smn1	97	53.357	ENSSPUG00000000373	-	99	51.379	Sphenodon_punctatus
ENSMALG00000008025	smn1	100	85.211	ENSSPAG00000004345	smn1	100	85.563	Stegastes_partitus
ENSMALG00000008025	smn1	57	60.833	ENSSSCG00000029127	-	67	70.968	Sus_scrofa
ENSMALG00000008025	smn1	94	51.986	ENSSSCG00000016970	-	91	52.747	Sus_scrofa
ENSMALG00000008025	smn1	91	50.725	ENSTGUG00000001548	-	95	48.339	Taeniopygia_guttata
ENSMALG00000008025	smn1	100	69.014	ENSTRUG00000000736	smn	100	72.887	Takifugu_rubripes
ENSMALG00000008025	smn1	100	65.636	ENSTNIG00000009892	smn1	100	68.041	Tetraodon_nigroviridis
ENSMALG00000008025	smn1	54	61.146	ENSTBEG00000002399	-	87	54.011	Tupaia_belangeri
ENSMALG00000008025	smn1	54	60.897	ENSTTRG00000005080	-	91	52.727	Tursiops_truncatus
ENSMALG00000008025	smn1	54	62.821	ENSUAMG00000024947	-	66	57.459	Ursus_americanus
ENSMALG00000008025	smn1	94	53.261	ENSUMAG00000007842	-	69	52.747	Ursus_maritimus
ENSMALG00000008025	smn1	91	49.618	ENSVPAG00000009887	-	61	82.609	Vicugna_pacos
ENSMALG00000008025	smn1	94	50.357	ENSVVUG00000006934	-	92	50.549	Vulpes_vulpes
ENSMALG00000008025	smn1	98	54.895	ENSXETG00000018189	smn2	95	50.000	Xenopus_tropicalis
ENSMALG00000008025	smn1	93	32.246	ENSXETG00000004912	-	81	63.158	Xenopus_tropicalis
ENSMALG00000008025	smn1	100	80.986	ENSXMAG00000001521	smn1	100	80.986	Xiphophorus_maculatus