EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000008042 (Gene tree)
Gene ID: 109955813
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 5041 bases
Position: chrKV884690.1:4449366-4454406
Accession: 109955813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000011328	Smg4_UPF3	PF03467.15	7.9e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000011570	-	3106	XM_020592331	ENSMALP00000011328	463 (aa)	XP_020447987	UPI0009B33015

Gene Model

Click here to download ENSMALG00000008042's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000008042's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000008042	upf3b	66	63.889	ENSG00000125351	UPF3B	96	67.943	Homo_sapiens
ENSMALG00000008042	upf3b	100	83.871	ENSAPOG00000012775	upf3b	100	83.011	Acanthochromis_polyacanthus
ENSMALG00000008042	upf3b	96	58.710	ENSAMEG00000000163	UPF3B	59	68.085	Ailuropoda_melanoleuca
ENSMALG00000008042	upf3b	100	81.974	ENSACIG00000013582	upf3b	100	82.189	Amphilophus_citrinellus
ENSMALG00000008042	upf3b	100	82.581	ENSAOCG00000000706	upf3b	100	81.505	Amphiprion_ocellaris
ENSMALG00000008042	upf3b	100	82.796	ENSAPEG00000005545	upf3b	100	81.720	Amphiprion_percula
ENSMALG00000008042	upf3b	100	84.797	ENSATEG00000018742	upf3b	100	83.940	Anabas_testudineus
ENSMALG00000008042	upf3b	95	61.197	ENSACAG00000003625	UPF3B	70	64.545	Anolis_carolinensis
ENSMALG00000008042	upf3b	86	50.000	ENSACAG00000001540	UPF3A	60	51.373	Anolis_carolinensis
ENSMALG00000008042	upf3b	98	54.717	ENSANAG00000025598	-	78	60.287	Aotus_nancymaae
ENSMALG00000008042	upf3b	98	58.071	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSMALG00000008042	upf3b	100	82.581	ENSACLG00000001649	upf3b	100	82.796	Astatotilapia_calliptera
ENSMALG00000008042	upf3b	55	77.992	ENSAMXG00000000199	upf3b	77	83.152	Astyanax_mexicanus
ENSMALG00000008042	upf3b	96	42.605	ENSAMXG00000002608	upf3a	51	57.203	Astyanax_mexicanus
ENSMALG00000008042	upf3b	55	67.883	ENSBTAG00000035615	UPF3B	88	67.279	Bos_taurus
ENSMALG00000008042	upf3b	98	58.316	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSMALG00000008042	upf3b	99	55.252	ENSCAFG00000018426	UPF3B	61	67.730	Canis_familiaris
ENSMALG00000008042	upf3b	96	53.664	ENSCAFG00020004074	UPF3B	69	61.017	Canis_lupus_dingo
ENSMALG00000008042	upf3b	94	40.275	ENSCHIG00000011454	-	50	47.639	Capra_hircus
ENSMALG00000008042	upf3b	99	53.971	ENSCHIG00000018011	-	88	66.912	Capra_hircus
ENSMALG00000008042	upf3b	96	54.697	ENSCHIG00000000247	-	60	65.085	Capra_hircus
ENSMALG00000008042	upf3b	96	55.556	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSMALG00000008042	upf3b	97	39.700	ENSCCAG00000029813	-	69	55.665	Cebus_capucinus
ENSMALG00000008042	upf3b	55	50.781	ENSCCAG00000021964	-	82	50.781	Cebus_capucinus
ENSMALG00000008042	upf3b	66	63.889	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSMALG00000008042	upf3b	66	64.815	ENSCLAG00000003260	UPF3B	59	68.794	Chinchilla_lanigera
ENSMALG00000008042	upf3b	66	61.424	ENSCSAG00000018348	UPF3B	60	65.085	Chlorocebus_sabaeus
ENSMALG00000008042	upf3b	94	58.520	ENSCPBG00000020685	UPF3B	57	67.897	Chrysemys_picta_bellii
ENSMALG00000008042	upf3b	55	67.647	ENSCANG00000029220	UPF3B	85	67.279	Colobus_angolensis_palliatus
ENSMALG00000008042	upf3b	67	57.576	ENSCGRG00001013643	-	89	54.242	Cricetulus_griseus_chok1gshd
ENSMALG00000008042	upf3b	98	53.700	ENSCGRG00001006858	-	70	58.788	Cricetulus_griseus_chok1gshd
ENSMALG00000008042	upf3b	90	55.370	ENSCGRG00000007627	Upf3b	66	64.260	Cricetulus_griseus_crigri
ENSMALG00000008042	upf3b	94	79.263	ENSCSEG00000002046	upf3b	99	73.181	Cynoglossus_semilaevis
ENSMALG00000008042	upf3b	100	78.970	ENSCVAG00000005030	upf3b	100	79.185	Cyprinodon_variegatus
ENSMALG00000008042	upf3b	94	71.005	ENSDARG00000000489	upf3b	95	70.852	Danio_rerio
ENSMALG00000008042	upf3b	94	57.569	ENSDNOG00000008665	UPF3B	60	65.424	Dasypus_novemcinctus
ENSMALG00000008042	upf3b	71	60.519	ENSDORG00000006077	Upf3b	60	67.021	Dipodomys_ordii
ENSMALG00000008042	upf3b	96	56.223	ENSEASG00005012919	UPF3B	74	58.772	Equus_asinus_asinus
ENSMALG00000008042	upf3b	96	56.223	ENSECAG00000016947	UPF3B	74	53.913	Equus_caballus
ENSMALG00000008042	upf3b	92	70.112	ENSELUG00000020389	upf3b	100	69.835	Esox_lucius
ENSMALG00000008042	upf3b	90	50.000	ENSELUG00000011050	upf3a	50	56.356	Esox_lucius
ENSMALG00000008042	upf3b	66	63.804	ENSFCAG00000004388	UPF3B	59	67.730	Felis_catus
ENSMALG00000008042	upf3b	94	56.133	ENSFALG00000001569	UPF3B	71	56.180	Ficedula_albicollis
ENSMALG00000008042	upf3b	95	57.018	ENSFDAG00000018869	UPF3B	59	68.085	Fukomys_damarensis
ENSMALG00000008042	upf3b	100	76.824	ENSFHEG00000017895	upf3b	100	76.395	Fundulus_heteroclitus
ENSMALG00000008042	upf3b	94	70.776	ENSGMOG00000001621	upf3b	94	69.663	Gadus_morhua
ENSMALG00000008042	upf3b	94	57.112	ENSGALG00000008618	UPF3B	69	63.253	Gallus_gallus
ENSMALG00000008042	upf3b	100	77.253	ENSGAFG00000000829	upf3b	100	78.541	Gambusia_affinis
ENSMALG00000008042	upf3b	100	80.215	ENSGACG00000017435	upf3b	94	87.891	Gasterosteus_aculeatus
ENSMALG00000008042	upf3b	94	62.864	ENSGAGG00000001219	UPF3B	70	65.031	Gopherus_agassizii
ENSMALG00000008042	upf3b	66	63.889	ENSGGOG00000023995	UPF3B	85	67.279	Gorilla_gorilla
ENSMALG00000008042	upf3b	100	82.366	ENSHBUG00000017393	upf3b	100	82.581	Haplochromis_burtoni
ENSMALG00000008042	upf3b	96	55.603	ENSHGLG00000019582	-	59	67.021	Heterocephalus_glaber_female
ENSMALG00000008042	upf3b	55	56.371	ENSHGLG00000001544	UPF3A	55	49.153	Heterocephalus_glaber_female
ENSMALG00000008042	upf3b	66	58.642	ENSHGLG00000011189	-	66	62.143	Heterocephalus_glaber_female
ENSMALG00000008042	upf3b	55	56.371	ENSHGLG00100013244	UPF3A	55	49.153	Heterocephalus_glaber_male
ENSMALG00000008042	upf3b	96	54.957	ENSHGLG00100002042	-	61	67.021	Heterocephalus_glaber_male
ENSMALG00000008042	upf3b	66	58.642	ENSHGLG00100001889	-	67	62.143	Heterocephalus_glaber_male
ENSMALG00000008042	upf3b	92	48.140	ENSHCOG00000013985	upf3a	66	71.698	Hippocampus_comes
ENSMALG00000008042	upf3b	100	71.338	ENSHCOG00000017004	upf3b	100	70.064	Hippocampus_comes
ENSMALG00000008042	upf3b	98	68.996	ENSIPUG00000019249	upf3b	98	68.996	Ictalurus_punctatus
ENSMALG00000008042	upf3b	94	58.991	ENSSTOG00000001101	UPF3B	59	68.085	Ictidomys_tridecemlineatus
ENSMALG00000008042	upf3b	68	61.027	ENSJJAG00000000053	Upf3b	70	58.507	Jaculus_jaculus
ENSMALG00000008042	upf3b	100	83.011	ENSKMAG00000020300	upf3b	100	82.581	Kryptolebias_marmoratus
ENSMALG00000008042	upf3b	60	84.477	ENSLBEG00000028689	upf3b	59	84.758	Labrus_bergylta
ENSMALG00000008042	upf3b	94	62.528	ENSLACG00000008691	UPF3B	67	69.841	Latimeria_chalumnae
ENSMALG00000008042	upf3b	90	53.302	ENSLOCG00000002665	upf3a	50	59.746	Lepisosteus_oculatus
ENSMALG00000008042	upf3b	95	67.191	ENSLOCG00000015238	upf3b	97	69.213	Lepisosteus_oculatus
ENSMALG00000008042	upf3b	96	56.156	ENSLAFG00000001267	UPF3B	59	67.730	Loxodonta_africana
ENSMALG00000008042	upf3b	66	63.580	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSMALG00000008042	upf3b	66	63.580	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSMALG00000008042	upf3b	66	63.580	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSMALG00000008042	upf3b	66	63.889	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSMALG00000008042	upf3b	100	82.796	ENSMZEG00005007871	upf3b	100	83.011	Maylandia_zebra
ENSMALG00000008042	upf3b	86	47.356	ENSMGAG00000014837	UPF3A	58	51.899	Meleagris_gallopavo
ENSMALG00000008042	upf3b	79	59.016	ENSMGAG00000007728	UPF3B	61	67.220	Meleagris_gallopavo
ENSMALG00000008042	upf3b	98	53.376	ENSMAUG00000008705	Upf3b	69	57.879	Mesocricetus_auratus
ENSMALG00000008042	upf3b	55	68.000	ENSMICG00000001743	UPF3B	65	67.943	Microcebus_murinus
ENSMALG00000008042	upf3b	98	53.183	ENSMOCG00000017893	Upf3b	60	63.390	Microtus_ochrogaster
ENSMALG00000008042	upf3b	100	79.095	ENSMMOG00000004183	upf3b	100	78.017	Mola_mola
ENSMALG00000008042	upf3b	91	48.471	ENSMODG00000003159	UPF3A	53	53.879	Monodelphis_domestica
ENSMALG00000008042	upf3b	87	62.069	ENSMODG00000010232	UPF3B	54	75.862	Monodelphis_domestica
ENSMALG00000008042	upf3b	94	55.263	MGP_CAROLIEiJ_G0032999	Upf3b	64	64.497	Mus_caroli
ENSMALG00000008042	upf3b	67	59.697	ENSMUSG00000036572	Upf3b	64	64.497	Mus_musculus
ENSMALG00000008042	upf3b	94	55.702	MGP_PahariEiJ_G0031543	Upf3b	64	65.089	Mus_pahari
ENSMALG00000008042	upf3b	67	59.697	MGP_SPRETEiJ_G0034152	Upf3b	64	64.497	Mus_spretus
ENSMALG00000008042	upf3b	71	62.464	ENSMPUG00000001531	UPF3B	61	68.085	Mustela_putorius_furo
ENSMALG00000008042	upf3b	96	56.438	ENSMLUG00000010821	UPF3B	59	68.440	Myotis_lucifugus
ENSMALG00000008042	upf3b	87	46.210	ENSMLUG00000015905	UPF3A	55	56.962	Myotis_lucifugus
ENSMALG00000008042	upf3b	94	55.165	ENSNGAG00000008231	Upf3b	59	65.603	Nannospalax_galili
ENSMALG00000008042	upf3b	61	67.832	ENSNLEG00000014897	UPF3B	57	78.302	Nomascus_leucogenys
ENSMALG00000008042	upf3b	96	54.095	ENSODEG00000002186	-	75	61.801	Octodon_degus
ENSMALG00000008042	upf3b	100	83.047	ENSONIG00000002536	upf3b	100	83.906	Oreochromis_niloticus
ENSMALG00000008042	upf3b	98	53.593	ENSOCUG00000010213	UPF3B	60	64.407	Oryctolagus_cuniculus
ENSMALG00000008042	upf3b	100	75.484	ENSORLG00000001026	upf3b	100	75.054	Oryzias_latipes
ENSMALG00000008042	upf3b	100	75.269	ENSORLG00020003758	upf3b	100	75.486	Oryzias_latipes_hni
ENSMALG00000008042	upf3b	100	75.054	ENSORLG00015012954	upf3b	100	74.624	Oryzias_latipes_hsok
ENSMALG00000008042	upf3b	96	47.312	ENSOMEG00000014425	upf3a	50	57.203	Oryzias_melastigma
ENSMALG00000008042	upf3b	100	75.484	ENSOMEG00000014736	upf3b	100	74.409	Oryzias_melastigma
ENSMALG00000008042	upf3b	94	54.185	ENSOGAG00000033003	-	72	59.292	Otolemur_garnettii
ENSMALG00000008042	upf3b	67	62.121	ENSOGAG00000004643	-	59	67.021	Otolemur_garnettii
ENSMALG00000008042	upf3b	96	54.357	ENSOARG00000016051	-	61	64.430	Ovis_aries
ENSMALG00000008042	upf3b	66	63.889	ENSPPAG00000040390	UPF3B	85	67.279	Pan_paniscus
ENSMALG00000008042	upf3b	97	58.209	ENSPPRG00000023536	UPF3B	59	67.730	Panthera_pardus
ENSMALG00000008042	upf3b	97	52.686	ENSPTIG00000015264	UPF3B	85	66.912	Panthera_tigris_altaica
ENSMALG00000008042	upf3b	66	63.889	ENSPTRG00000022228	UPF3B	85	67.279	Pan_troglodytes
ENSMALG00000008042	upf3b	66	63.889	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSMALG00000008042	upf3b	95	68.397	ENSPKIG00000019226	upf3b	92	83.099	Paramormyrops_kingsleyae
ENSMALG00000008042	upf3b	92	47.137	ENSPKIG00000004422	upf3a	51	56.897	Paramormyrops_kingsleyae
ENSMALG00000008042	upf3b	57	64.794	ENSPSIG00000005833	UPF3B	84	66.946	Pelodiscus_sinensis
ENSMALG00000008042	upf3b	90	49.526	ENSPSIG00000007468	UPF3A	55	53.478	Pelodiscus_sinensis
ENSMALG00000008042	upf3b	57	86.260	ENSPMGG00000016067	upf3b	95	86.260	Periophthalmus_magnuspinnatus
ENSMALG00000008042	upf3b	94	56.645	ENSPEMG00000012352	Upf3b	59	65.957	Peromyscus_maniculatus_bairdii
ENSMALG00000008042	upf3b	89	58.894	ENSPCIG00000028914	UPF3B	59	61.404	Phascolarctos_cinereus
ENSMALG00000008042	upf3b	75	52.966	ENSPCIG00000019590	-	64	66.438	Phascolarctos_cinereus
ENSMALG00000008042	upf3b	100	77.682	ENSPLAG00000019922	upf3b	100	77.897	Poecilia_latipinna
ENSMALG00000008042	upf3b	92	47.126	ENSPLAG00000011960	upf3a	68	61.194	Poecilia_latipinna
ENSMALG00000008042	upf3b	100	77.682	ENSPLAG00000005105	upf3b	100	77.897	Poecilia_latipinna
ENSMALG00000008042	upf3b	100	77.682	ENSPMEG00000023532	upf3b	100	77.897	Poecilia_mexicana
ENSMALG00000008042	upf3b	56	67.399	ENSPPYG00000020675	-	82	67.033	Pongo_abelii
ENSMALG00000008042	upf3b	94	54.274	ENSPCAG00000009464	UPF3B	60	64.746	Procavia_capensis
ENSMALG00000008042	upf3b	96	56.531	ENSPCOG00000021960	UPF3B	65	67.943	Propithecus_coquereli
ENSMALG00000008042	upf3b	96	47.390	ENSPVAG00000014075	UPF3B	61	55.254	Pteropus_vampyrus
ENSMALG00000008042	upf3b	100	82.366	ENSPNYG00000009846	upf3b	100	82.151	Pundamilia_nyererei
ENSMALG00000008042	upf3b	94	44.045	ENSPNAG00000019532	upf3a	50	56.596	Pygocentrus_nattereri
ENSMALG00000008042	upf3b	95	72.991	ENSPNAG00000021528	upf3b	96	73.214	Pygocentrus_nattereri
ENSMALG00000008042	upf3b	94	54.705	ENSRNOG00000039994	Upf3b	94	53.947	Rattus_norvegicus
ENSMALG00000008042	upf3b	51	66.667	ENSRBIG00000037219	UPF3B	51	70.098	Rhinopithecus_bieti
ENSMALG00000008042	upf3b	66	63.889	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSMALG00000008042	upf3b	98	58.159	ENSSBOG00000019740	UPF3B	99	66.507	Saimiri_boliviensis_boliviensis
ENSMALG00000008042	upf3b	94	57.952	ENSSHAG00000008634	UPF3B	70	60.479	Sarcophilus_harrisii
ENSMALG00000008042	upf3b	94	71.364	ENSSFOG00015005614	upf3b	97	69.690	Scleropages_formosus
ENSMALG00000008042	upf3b	100	80.556	ENSSMAG00000012913	upf3b	100	87.500	Scophthalmus_maximus
ENSMALG00000008042	upf3b	100	84.731	ENSSDUG00000005682	upf3b	100	84.516	Seriola_dumerili
ENSMALG00000008042	upf3b	92	42.202	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSMALG00000008042	upf3b	100	84.516	ENSSLDG00000003130	upf3b	100	84.301	Seriola_lalandi_dorsalis
ENSMALG00000008042	upf3b	86	55.097	ENSSARG00000004147	UPF3B	55	70.124	Sorex_araneus
ENSMALG00000008042	upf3b	94	57.576	ENSSPUG00000013082	UPF3B	68	59.403	Sphenodon_punctatus
ENSMALG00000008042	upf3b	92	49.061	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSMALG00000008042	upf3b	99	82.900	ENSSPAG00000009989	upf3b	99	82.900	Stegastes_partitus
ENSMALG00000008042	upf3b	98	57.233	ENSSSCG00000012617	UPF3B	59	67.730	Sus_scrofa
ENSMALG00000008042	upf3b	87	62.222	ENSTGUG00000003413	UPF3B	65	68.214	Taeniopygia_guttata
ENSMALG00000008042	upf3b	87	51.707	ENSTGUG00000009493	UPF3A	65	51.154	Taeniopygia_guttata
ENSMALG00000008042	upf3b	100	76.242	ENSTRUG00000010645	upf3b	100	74.946	Takifugu_rubripes
ENSMALG00000008042	upf3b	99	67.527	ENSTNIG00000015763	upf3b	100	63.519	Tetraodon_nigroviridis
ENSMALG00000008042	upf3b	94	48.077	ENSTBEG00000003229	UPF3B	70	56.777	Tupaia_belangeri
ENSMALG00000008042	upf3b	96	55.983	ENSUAMG00000024565	UPF3B	59	64.184	Ursus_americanus
ENSMALG00000008042	upf3b	84	58.416	ENSVPAG00000009971	UPF3B	53	70.136	Vicugna_pacos
ENSMALG00000008042	upf3b	96	53.448	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSMALG00000008042	upf3b	94	54.054	ENSXETG00000007440	upf3b	84	75.773	Xenopus_tropicalis
ENSMALG00000008042	upf3b	100	69.957	ENSXCOG00000016586	upf3b	97	89.744	Xiphophorus_couchianus
ENSMALG00000008042	upf3b	100	77.253	ENSXMAG00000013680	upf3b	100	77.468	Xiphophorus_maculatus
ENSMALG00000008042	upf3b	61	70.667	ENSXMAG00000013452	upf3a	56	60.000	Xiphophorus_maculatus