EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000008914 (Gene tree)
Gene ID: 109955623
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 22651 bases
Position: chrKV884704.1:3117062-3139712
Accession: 109955623
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000012574	RRM_1	PF00076.22	1.5e-31	1	2
ENSMALP00000012574	RRM_1	PF00076.22	1.5e-31	2	2
ENSMALP00000012560	RRM_1	PF00076.22	1.6e-31	1	2
ENSMALP00000012560	RRM_1	PF00076.22	1.6e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000012841	-	1479	-	ENSMALP00000012574	492 (aa)	-	-
ENSMALT00000012827	-	5061	XM_020591937	ENSMALP00000012560	510 (aa)	XP_020447593	UPI0009B330C4

Gene Model

Click here to download ENSMALG00000008914's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000008914's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000008914	pspc1	77	58.929	ENSMALG00000001310	nono	89	58.929
ENSMALG00000008914	pspc1	86	53.333	ENSMALG00000010381	sfpq	50	68.085

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000008914	pspc1	88	67.591	ENSG00000121390	PSPC1	82	77.469	Homo_sapiens
ENSMALG00000008914	pspc1	100	83.908	ENSAPOG00000015946	pspc1	100	83.908	Acanthochromis_polyacanthus
ENSMALG00000008914	pspc1	92	65.447	ENSAMEG00000017420	PSPC1	92	67.143	Ailuropoda_melanoleuca
ENSMALG00000008914	pspc1	100	76.938	ENSACIG00000018695	pspc1	100	77.336	Amphilophus_citrinellus
ENSMALG00000008914	pspc1	100	83.969	ENSAOCG00000005279	pspc1	100	84.160	Amphiprion_ocellaris
ENSMALG00000008914	pspc1	100	84.453	ENSAPEG00000015927	pspc1	100	84.645	Amphiprion_percula
ENSMALG00000008914	pspc1	100	76.265	ENSATEG00000004878	pspc1	100	76.265	Anabas_testudineus
ENSMALG00000008914	pspc1	70	62.169	ENSAPLG00000003643	SFPQ	82	56.416	Anas_platyrhynchos
ENSMALG00000008914	pspc1	76	66.423	ENSAPLG00000006246	PSPC1	100	67.476	Anas_platyrhynchos
ENSMALG00000008914	pspc1	88	65.417	ENSACAG00000002093	PSPC1	88	67.804	Anolis_carolinensis
ENSMALG00000008914	pspc1	69	58.011	ENSACAG00000013307	-	67	52.784	Anolis_carolinensis
ENSMALG00000008914	pspc1	92	65.447	ENSANAG00000000059	PSPC1	92	67.347	Aotus_nancymaae
ENSMALG00000008914	pspc1	100	75.502	ENSACLG00000027220	pspc1	100	76.305	Astatotilapia_calliptera
ENSMALG00000008914	pspc1	100	65.672	ENSAMXG00000036881	pspc1	100	66.231	Astyanax_mexicanus
ENSMALG00000008914	pspc1	90	66.806	ENSBTAG00000003934	PSPC1	89	69.313	Bos_taurus
ENSMALG00000008914	pspc1	92	65.447	ENSCJAG00000004554	PSPC1	92	67.347	Callithrix_jacchus
ENSMALG00000008914	pspc1	88	67.591	ENSCAFG00020002009	PSPC1	83	77.469	Canis_lupus_dingo
ENSMALG00000008914	pspc1	90	66.806	ENSCHIG00000016708	PSPC1	89	69.313	Capra_hircus
ENSMALG00000008914	pspc1	78	60.520	ENSTSYG00000032882	PSPC1	92	60.190	Carlito_syrichta
ENSMALG00000008914	pspc1	88	66.808	ENSCPOG00000000395	PSPC1	83	77.469	Cavia_porcellus
ENSMALG00000008914	pspc1	92	65.447	ENSCCAG00000033498	PSPC1	92	67.551	Cebus_capucinus
ENSMALG00000008914	pspc1	88	67.377	ENSCATG00000036434	PSPC1	94	73.563	Cercocebus_atys
ENSMALG00000008914	pspc1	75	67.241	ENSCLAG00000005241	PSPC1	89	69.059	Chinchilla_lanigera
ENSMALG00000008914	pspc1	89	63.158	ENSCHOG00000008913	PSPC1	91	63.618	Choloepus_hoffmanni
ENSMALG00000008914	pspc1	89	66.876	ENSCPBG00000020859	PSPC1	88	68.094	Chrysemys_picta_bellii
ENSMALG00000008914	pspc1	57	58.076	ENSCSAVG00000003533	-	53	59.712	Ciona_savignyi
ENSMALG00000008914	pspc1	51	79.389	ENSCANG00000018948	PSPC1	87	79.389	Colobus_angolensis_palliatus
ENSMALG00000008914	pspc1	93	65.580	ENSCGRG00001018368	Pspc1	91	67.073	Cricetulus_griseus_chok1gshd
ENSMALG00000008914	pspc1	93	65.580	ENSCGRG00000011724	Pspc1	91	67.073	Cricetulus_griseus_crigri
ENSMALG00000008914	pspc1	100	75.629	ENSCVAG00000007679	-	100	76.015	Cyprinodon_variegatus
ENSMALG00000008914	pspc1	100	63.327	ENSDARG00000006621	pspc1	100	68.734	Danio_rerio
ENSMALG00000008914	pspc1	89	67.715	ENSDNOG00000011078	PSPC1	88	69.528	Dasypus_novemcinctus
ENSMALG00000008914	pspc1	88	65.817	ENSDORG00000016050	Pspc1	88	66.953	Dipodomys_ordii
ENSMALG00000008914	pspc1	53	75.248	ENSETEG00000000502	-	72	75.248	Echinops_telfairi
ENSMALG00000008914	pspc1	64	42.000	ENSEBUG00000010133	pspc1	75	45.645	Eptatretus_burgeri
ENSMALG00000008914	pspc1	89	53.830	ENSEBUG00000003964	-	62	63.768	Eptatretus_burgeri
ENSMALG00000008914	pspc1	88	67.872	ENSEASG00005000119	PSPC1	87	73.504	Equus_asinus_asinus
ENSMALG00000008914	pspc1	88	67.872	ENSECAG00000017286	PSPC1	87	73.504	Equus_caballus
ENSMALG00000008914	pspc1	53	67.176	ENSEEUG00000011288	-	51	67.308	Erinaceus_europaeus
ENSMALG00000008914	pspc1	100	68.156	ENSELUG00000003746	pspc1	100	68.275	Esox_lucius
ENSMALG00000008914	pspc1	88	67.804	ENSFCAG00000027841	PSPC1	83	77.469	Felis_catus
ENSMALG00000008914	pspc1	89	66.597	ENSFALG00000008750	PSPC1	88	67.880	Ficedula_albicollis
ENSMALG00000008914	pspc1	91	66.324	ENSFDAG00000002617	PSPC1	90	69.313	Fukomys_damarensis
ENSMALG00000008914	pspc1	100	63.532	ENSGMOG00000015074	pspc1	100	63.340	Gadus_morhua
ENSMALG00000008914	pspc1	87	67.164	ENSGALG00000017142	PSPC1	88	67.880	Gallus_gallus
ENSMALG00000008914	pspc1	76	78.571	ENSGAFG00000006327	pspc1	81	78.571	Gambusia_affinis
ENSMALG00000008914	pspc1	100	74.903	ENSGACG00000014901	pspc1	99	75.097	Gasterosteus_aculeatus
ENSMALG00000008914	pspc1	89	66.876	ENSGAGG00000019164	PSPC1	88	68.094	Gopherus_agassizii
ENSMALG00000008914	pspc1	71	60.963	ENSGAGG00000017325	-	67	55.556	Gopherus_agassizii
ENSMALG00000008914	pspc1	88	67.591	ENSGGOG00000003414	PSPC1	82	77.469	Gorilla_gorilla
ENSMALG00000008914	pspc1	100	81.589	ENSHBUG00000001139	pspc1	100	82.171	Haplochromis_burtoni
ENSMALG00000008914	pspc1	88	67.653	ENSHGLG00000018811	PSPC1	89	69.313	Heterocephalus_glaber_female
ENSMALG00000008914	pspc1	61	74.038	ENSHGLG00100007962	PSPC1	87	78.322	Heterocephalus_glaber_male
ENSMALG00000008914	pspc1	81	74.940	ENSHCOG00000013251	pspc1	99	69.933	Hippocampus_comes
ENSMALG00000008914	pspc1	100	67.736	ENSIPUG00000013192	pspc1	100	68.302	Ictalurus_punctatus
ENSMALG00000008914	pspc1	90	67.012	ENSSTOG00000026833	PSPC1	82	77.469	Ictidomys_tridecemlineatus
ENSMALG00000008914	pspc1	88	67.234	ENSJJAG00000018334	Pspc1	88	69.313	Jaculus_jaculus
ENSMALG00000008914	pspc1	100	62.173	ENSKMAG00000013525	-	98	80.328	Kryptolebias_marmoratus
ENSMALG00000008914	pspc1	99	72.932	ENSLBEG00000004474	pspc1	99	73.258	Labrus_bergylta
ENSMALG00000008914	pspc1	87	66.452	ENSLACG00000010762	PSPC1	100	62.639	Latimeria_chalumnae
ENSMALG00000008914	pspc1	87	71.002	ENSLOCG00000010832	pspc1	91	73.077	Lepisosteus_oculatus
ENSMALG00000008914	pspc1	82	70.159	ENSLAFG00000010968	PSPC1	88	69.742	Loxodonta_africana
ENSMALG00000008914	pspc1	88	67.377	ENSMFAG00000032728	PSPC1	96	73.639	Macaca_fascicularis
ENSMALG00000008914	pspc1	88	67.377	ENSMMUG00000020262	PSPC1	92	73.563	Macaca_mulatta
ENSMALG00000008914	pspc1	88	67.377	ENSMNEG00000027401	PSPC1	89	69.555	Macaca_nemestrina
ENSMALG00000008914	pspc1	75	66.995	ENSMLEG00000039043	PSPC1	94	69.554	Mandrillus_leucophaeus
ENSMALG00000008914	pspc1	100	80.377	ENSMAMG00000004333	pspc1	100	80.755	Mastacembelus_armatus
ENSMALG00000008914	pspc1	100	75.502	ENSMZEG00005005726	pspc1	100	76.305	Maylandia_zebra
ENSMALG00000008914	pspc1	76	66.344	ENSMGAG00000015134	PSPC1	100	67.391	Meleagris_gallopavo
ENSMALG00000008914	pspc1	81	64.319	ENSMAUG00000021067	Pspc1	89	62.037	Mesocricetus_auratus
ENSMALG00000008914	pspc1	88	69.379	ENSMICG00000013970	PSPC1	83	77.469	Microcebus_murinus
ENSMALG00000008914	pspc1	88	67.382	ENSMOCG00000006060	Pspc1	88	69.099	Microtus_ochrogaster
ENSMALG00000008914	pspc1	85	89.286	ENSMMOG00000004352	pspc1	74	89.286	Mola_mola
ENSMALG00000008914	pspc1	83	70.115	ENSMODG00000008029	PSPC1	66	72.993	Monodelphis_domestica
ENSMALG00000008914	pspc1	83	69.355	MGP_CAROLIEiJ_G0019341	Pspc1	86	72.030	Mus_caroli
ENSMALG00000008914	pspc1	81	70.629	ENSMUSG00000021938	Pspc1	86	72.030	Mus_musculus
ENSMALG00000008914	pspc1	88	67.666	MGP_PahariEiJ_G0030359	Pspc1	86	72.030	Mus_pahari
ENSMALG00000008914	pspc1	81	70.629	MGP_SPRETEiJ_G0020232	Pspc1	86	72.030	Mus_spretus
ENSMALG00000008914	pspc1	88	67.591	ENSMPUG00000013347	PSPC1	88	69.528	Mustela_putorius_furo
ENSMALG00000008914	pspc1	88	68.565	ENSMLUG00000017663	PSPC1	89	69.083	Myotis_lucifugus
ENSMALG00000008914	pspc1	93	66.258	ENSNGAG00000011271	Pspc1	91	66.463	Nannospalax_galili
ENSMALG00000008914	pspc1	78	76.823	ENSNBRG00000014059	pspc1	92	76.823	Neolamprologus_brichardi
ENSMALG00000008914	pspc1	88	67.591	ENSNLEG00000001294	PSPC1	91	67.347	Nomascus_leucogenys
ENSMALG00000008914	pspc1	66	70.936	ENSMEUG00000000476	PSPC1	72	72.680	Notamacropus_eugenii
ENSMALG00000008914	pspc1	88	59.023	ENSODEG00000007817	-	88	58.263	Octodon_degus
ENSMALG00000008914	pspc1	88	63.291	ENSODEG00000019012	-	88	64.240	Octodon_degus
ENSMALG00000008914	pspc1	100	82.398	ENSONIG00000012010	pspc1	99	82.979	Oreochromis_niloticus
ENSMALG00000008914	pspc1	75	67.241	ENSOANG00000009017	-	100	69.042	Ornithorhynchus_anatinus
ENSMALG00000008914	pspc1	81	55.792	ENSOANG00000011381	-	91	54.013	Ornithorhynchus_anatinus
ENSMALG00000008914	pspc1	89	67.086	ENSOCUG00000006153	PSPC1	88	69.528	Oryctolagus_cuniculus
ENSMALG00000008914	pspc1	100	76.998	ENSORLG00000004232	-	100	75.828	Oryzias_latipes
ENSMALG00000008914	pspc1	100	77.583	ENSORLG00020000578	PSPC1	100	74.708	Oryzias_latipes_hni
ENSMALG00000008914	pspc1	100	77.388	ENSORLG00015017480	pspc1	100	76.218	Oryzias_latipes_hsok
ENSMALG00000008914	pspc1	88	67.804	ENSOGAG00000012643	PSPC1	88	69.742	Otolemur_garnettii
ENSMALG00000008914	pspc1	87	67.597	ENSOARG00000014163	PSPC1	95	68.966	Ovis_aries
ENSMALG00000008914	pspc1	88	61.407	ENSPPAG00000009836	PSPC1	92	77.469	Pan_paniscus
ENSMALG00000008914	pspc1	88	67.804	ENSPPRG00000008833	PSPC1	88	69.742	Panthera_pardus
ENSMALG00000008914	pspc1	75	66.749	ENSPTIG00000016917	PSPC1	84	69.554	Panthera_tigris_altaica
ENSMALG00000008914	pspc1	83	69.336	ENSPTRG00000005677	PSPC1	82	77.469	Pan_troglodytes
ENSMALG00000008914	pspc1	88	67.377	ENSPANG00000001992	PSPC1	94	73.639	Papio_anubis
ENSMALG00000008914	pspc1	100	64.880	ENSPKIG00000003578	pspc1	100	67.416	Paramormyrops_kingsleyae
ENSMALG00000008914	pspc1	90	65.631	ENSPSIG00000005168	PSPC1	88	67.304	Pelodiscus_sinensis
ENSMALG00000008914	pspc1	69	70.637	ENSPMGG00000015135	pspc1	98	69.944	Periophthalmus_magnuspinnatus
ENSMALG00000008914	pspc1	81	70.794	ENSPEMG00000015214	Pspc1	88	69.313	Peromyscus_maniculatus_bairdii
ENSMALG00000008914	pspc1	59	41.497	ENSPMAG00000004618	pspc1	81	43.820	Petromyzon_marinus
ENSMALG00000008914	pspc1	89	67.296	ENSPCIG00000017680	PSPC1	88	69.957	Phascolarctos_cinereus
ENSMALG00000008914	pspc1	99	80.196	ENSPFOG00000003362	pspc1	99	80.196	Poecilia_formosa
ENSMALG00000008914	pspc1	100	79.884	ENSPLAG00000011540	pspc1	100	79.884	Poecilia_latipinna
ENSMALG00000008914	pspc1	84	51.225	ENSPLAG00000004407	-	59	50.333	Poecilia_latipinna
ENSMALG00000008914	pspc1	84	51.577	ENSPMEG00000001025	-	53	53.398	Poecilia_mexicana
ENSMALG00000008914	pspc1	100	79.691	ENSPMEG00000008322	pspc1	100	79.691	Poecilia_mexicana
ENSMALG00000008914	pspc1	100	79.497	ENSPREG00000007786	pspc1	100	79.497	Poecilia_reticulata
ENSMALG00000008914	pspc1	88	67.164	ENSPPYG00000005186	PSPC1	85	72.705	Pongo_abelii
ENSMALG00000008914	pspc1	88	66.167	ENSPCOG00000014364	PSPC1	88	66.309	Propithecus_coquereli
ENSMALG00000008914	pspc1	88	68.162	ENSPVAG00000005036	PSPC1	89	68.240	Pteropus_vampyrus
ENSMALG00000008914	pspc1	100	75.502	ENSPNYG00000008893	pspc1	100	76.305	Pundamilia_nyererei
ENSMALG00000008914	pspc1	100	68.691	ENSPNAG00000016511	pspc1	100	68.421	Pygocentrus_nattereri
ENSMALG00000008914	pspc1	88	67.597	ENSRNOG00000020782	Pspc1	86	72.208	Rattus_norvegicus
ENSMALG00000008914	pspc1	88	67.591	ENSRBIG00000036057	PSPC1	91	77.469	Rhinopithecus_bieti
ENSMALG00000008914	pspc1	88	67.591	ENSRROG00000036334	PSPC1	82	77.469	Rhinopithecus_roxellana
ENSMALG00000008914	pspc1	76	59.466	ENSSBOG00000028172	PSPC1	90	75.725	Saimiri_boliviensis_boliviensis
ENSMALG00000008914	pspc1	92	61.134	ENSSHAG00000004696	PSPC1	88	64.957	Sarcophilus_harrisii
ENSMALG00000008914	pspc1	87	69.008	ENSSFOG00015001395	pspc1	99	73.932	Scleropages_formosus
ENSMALG00000008914	pspc1	100	77.883	ENSSMAG00000001761	pspc1	100	77.883	Scophthalmus_maximus
ENSMALG00000008914	pspc1	100	80.556	ENSSDUG00000010651	pspc1	100	81.852	Seriola_dumerili
ENSMALG00000008914	pspc1	100	78.788	ENSSLDG00000004284	pspc1	100	80.202	Seriola_lalandi_dorsalis
ENSMALG00000008914	pspc1	81	64.965	ENSSARG00000000888	PSPC1	89	63.519	Sorex_araneus
ENSMALG00000008914	pspc1	89	60.129	ENSSPUG00000008550	PSPC1	88	62.222	Sphenodon_punctatus
ENSMALG00000008914	pspc1	87	51.101	ENSSPUG00000001136	-	64	48.884	Sphenodon_punctatus
ENSMALG00000008914	pspc1	100	82.830	ENSSPAG00000001921	pspc1	100	82.830	Stegastes_partitus
ENSMALG00000008914	pspc1	88	67.591	ENSSSCG00000009569	PSPC1	84	77.160	Sus_scrofa
ENSMALG00000008914	pspc1	88	66.878	ENSTGUG00000011295	PSPC1	99	68.085	Taeniopygia_guttata
ENSMALG00000008914	pspc1	100	72.481	ENSTRUG00000011335	pspc1	100	72.093	Takifugu_rubripes
ENSMALG00000008914	pspc1	100	72.798	ENSTNIG00000010358	pspc1	100	72.798	Tetraodon_nigroviridis
ENSMALG00000008914	pspc1	87	59.957	ENSTBEG00000002361	PSPC1	88	59.957	Tupaia_belangeri
ENSMALG00000008914	pspc1	81	70.766	ENSTTRG00000003343	PSPC1	89	69.528	Tursiops_truncatus
ENSMALG00000008914	pspc1	61	73.802	ENSUAMG00000012309	PSPC1	82	78.322	Ursus_americanus
ENSMALG00000008914	pspc1	85	68.062	ENSUMAG00000013993	PSPC1	91	77.160	Ursus_maritimus
ENSMALG00000008914	pspc1	75	67.488	ENSVPAG00000010029	PSPC1	100	69.307	Vicugna_pacos
ENSMALG00000008914	pspc1	88	67.591	ENSVVUG00000006414	PSPC1	84	77.469	Vulpes_vulpes
ENSMALG00000008914	pspc1	76	78.316	ENSXCOG00000017438	pspc1	93	78.316	Xiphophorus_couchianus
ENSMALG00000008914	pspc1	76	78.316	ENSXMAG00000007929	pspc1	93	78.316	Xiphophorus_maculatus