EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000009000 (Gene tree)
Gene ID: 109955773
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 41504 bases
Position: chrKV884704.1:3213751-3255254
Accession: 109955773
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000012761	R3H	PF01424.22	1.8e-12	1	1
ENSMALP00000012695	R3H	PF01424.22	1.8e-12	1	1
ENSMALP00000012722	R3H	PF01424.22	1.8e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000012991	-	3609	-	ENSMALP00000012722	1102 (aa)	-	-
ENSMALT00000013030	-	3579	XM_020592241	ENSMALP00000012761	1092 (aa)	XP_020447897	-
ENSMALT00000012963	-	3705	XM_020592234	ENSMALP00000012695	1134 (aa)	XP_020447890	UPI0009B4C36A

Gene Model

Click here to download ENSMALG00000009000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000009000's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000009000	r3hdm1	68	55.591	ENSMALG00000010211	r3hdm2	96	55.556

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000009000	r3hdm1	91	58.065	ENSG00000048991	R3HDM1	91	68.939	Homo_sapiens
ENSMALG00000009000	r3hdm1	91	86.711	ENSAPOG00000020850	r3hdm1	97	86.807	Acanthochromis_polyacanthus
ENSMALG00000009000	r3hdm1	100	46.435	ENSAMEG00000014886	R3HDM1	99	46.453	Ailuropoda_melanoleuca
ENSMALG00000009000	r3hdm1	90	86.220	ENSAOCG00000005192	r3hdm1	100	86.507	Amphiprion_ocellaris
ENSMALG00000009000	r3hdm1	90	83.685	ENSAPEG00000016108	r3hdm1	100	83.973	Amphiprion_percula
ENSMALG00000009000	r3hdm1	90	84.749	ENSATEG00000000232	r3hdm1	100	84.846	Anabas_testudineus
ENSMALG00000009000	r3hdm1	99	45.939	ENSAPLG00000015231	R3HDM1	99	46.731	Anas_platyrhynchos
ENSMALG00000009000	r3hdm1	100	45.379	ENSACAG00000001676	R3HDM1	99	44.913	Anolis_carolinensis
ENSMALG00000009000	r3hdm1	91	58.065	ENSANAG00000035334	R3HDM1	99	58.065	Aotus_nancymaae
ENSMALG00000009000	r3hdm1	90	81.736	ENSACLG00000027282	r3hdm1	100	81.837	Astatotilapia_calliptera
ENSMALG00000009000	r3hdm1	90	67.109	ENSAMXG00000003536	r3hdm1	95	67.109	Astyanax_mexicanus
ENSMALG00000009000	r3hdm1	92	64.010	ENSAMXG00000012861	R3HDM1	99	63.285	Astyanax_mexicanus
ENSMALG00000009000	r3hdm1	68	35.819	ENSAMXG00000020587	arpp21	80	54.709	Astyanax_mexicanus
ENSMALG00000009000	r3hdm1	100	46.683	ENSBTAG00000013302	R3HDM1	99	46.700	Bos_taurus
ENSMALG00000009000	r3hdm1	91	57.816	ENSCJAG00000011718	R3HDM1	99	57.816	Callithrix_jacchus
ENSMALG00000009000	r3hdm1	100	46.348	ENSCAFG00000005075	R3HDM1	99	46.453	Canis_familiaris
ENSMALG00000009000	r3hdm1	100	46.477	ENSCAFG00020016119	R3HDM1	92	58.349	Canis_lupus_dingo
ENSMALG00000009000	r3hdm1	100	46.432	ENSCHIG00000020851	R3HDM1	99	46.533	Capra_hircus
ENSMALG00000009000	r3hdm1	100	45.721	ENSCPOG00000012784	R3HDM1	100	61.905	Cavia_porcellus
ENSMALG00000009000	r3hdm1	91	57.568	ENSCCAG00000027199	R3HDM1	99	57.568	Cebus_capucinus
ENSMALG00000009000	r3hdm1	91	58.065	ENSCATG00000023642	R3HDM1	99	58.065	Cercocebus_atys
ENSMALG00000009000	r3hdm1	100	44.979	ENSCLAG00000007962	R3HDM1	100	64.626	Chinchilla_lanigera
ENSMALG00000009000	r3hdm1	100	46.225	ENSCSAG00000016356	R3HDM1	99	46.109	Chlorocebus_sabaeus
ENSMALG00000009000	r3hdm1	79	66.412	ENSCHOG00000013638	R3HDM1	80	66.412	Choloepus_hoffmanni
ENSMALG00000009000	r3hdm1	82	70.504	ENSCPBG00000009645	R3HDM1	99	70.504	Chrysemys_picta_bellii
ENSMALG00000009000	r3hdm1	94	57.714	ENSCANG00000034748	R3HDM1	99	58.065	Colobus_angolensis_palliatus
ENSMALG00000009000	r3hdm1	99	45.861	ENSCGRG00001012357	R3hdm1	96	46.005	Cricetulus_griseus_chok1gshd
ENSMALG00000009000	r3hdm1	92	57.714	ENSCGRG00000012080	R3hdm1	100	65.646	Cricetulus_griseus_crigri
ENSMALG00000009000	r3hdm1	90	70.157	ENSCSEG00000008944	r3hdm1	100	71.359	Cynoglossus_semilaevis
ENSMALG00000009000	r3hdm1	90	77.575	ENSCVAG00000007582	r3hdm1	100	77.767	Cyprinodon_variegatus
ENSMALG00000009000	r3hdm1	50	37.564	ENSDARG00000061081	arpp21	90	43.875	Danio_rerio
ENSMALG00000009000	r3hdm1	100	44.397	ENSDNOG00000000771	R3HDM1	99	45.103	Dasypus_novemcinctus
ENSMALG00000009000	r3hdm1	80	55.512	ENSETEG00000013606	R3HDM1	99	43.603	Echinops_telfairi
ENSMALG00000009000	r3hdm1	92	60.000	ENSEASG00005007392	R3HDM1	99	59.762	Equus_asinus_asinus
ENSMALG00000009000	r3hdm1	91	60.000	ENSECAG00000019114	R3HDM1	99	59.762	Equus_caballus
ENSMALG00000009000	r3hdm1	71	51.718	ENSEEUG00000012589	R3HDM1	72	52.863	Erinaceus_europaeus
ENSMALG00000009000	r3hdm1	93	48.134	ENSELUG00000004909	R3HDM1	98	48.289	Esox_lucius
ENSMALG00000009000	r3hdm1	88	48.750	ENSELUG00000014413	r3hdm1	96	49.567	Esox_lucius
ENSMALG00000009000	r3hdm1	91	60.000	ENSFCAG00000027113	R3HDM1	99	46.494	Felis_catus
ENSMALG00000009000	r3hdm1	76	48.673	ENSFALG00000013731	R3HDM1	94	43.919	Ficedula_albicollis
ENSMALG00000009000	r3hdm1	99	45.861	ENSFDAG00000016478	R3HDM1	100	65.646	Fukomys_damarensis
ENSMALG00000009000	r3hdm1	90	77.799	ENSFHEG00000018713	r3hdm1	100	77.799	Fundulus_heteroclitus
ENSMALG00000009000	r3hdm1	91	58.313	ENSGALG00000012246	R3HDM1	98	65.049	Gallus_gallus
ENSMALG00000009000	r3hdm1	90	73.795	ENSGAFG00000006203	r3hdm1	100	74.372	Gambusia_affinis
ENSMALG00000009000	r3hdm1	90	79.364	ENSGACG00000014925	r3hdm1	99	79.556	Gasterosteus_aculeatus
ENSMALG00000009000	r3hdm1	92	60.341	ENSGAGG00000007840	R3HDM1	96	57.303	Gopherus_agassizii
ENSMALG00000009000	r3hdm1	91	58.065	ENSGGOG00000008156	R3HDM1	99	58.065	Gorilla_gorilla
ENSMALG00000009000	r3hdm1	100	45.962	ENSHGLG00000015718	R3HDM1	100	64.966	Heterocephalus_glaber_female
ENSMALG00000009000	r3hdm1	100	45.878	ENSHGLG00100003184	-	100	65.306	Heterocephalus_glaber_male
ENSMALG00000009000	r3hdm1	76	49.642	ENSHGLG00100015374	-	85	41.235	Heterocephalus_glaber_male
ENSMALG00000009000	r3hdm1	90	67.053	ENSHCOG00000013366	r3hdm1	100	67.170	Hippocampus_comes
ENSMALG00000009000	r3hdm1	58	38.318	ENSIPUG00000020552	arpp21	84	39.441	Ictalurus_punctatus
ENSMALG00000009000	r3hdm1	91	60.250	ENSIPUG00000013629	r3hdm1	99	59.500	Ictalurus_punctatus
ENSMALG00000009000	r3hdm1	83	63.070	ENSIPUG00000001676	R3HDM1	100	63.793	Ictalurus_punctatus
ENSMALG00000009000	r3hdm1	100	46.560	ENSSTOG00000007572	R3HDM1	100	65.646	Ictidomys_tridecemlineatus
ENSMALG00000009000	r3hdm1	92	62.708	ENSLACG00000005334	R3HDM1	99	61.995	Latimeria_chalumnae
ENSMALG00000009000	r3hdm1	98	50.134	ENSLOCG00000001641	r3hdm1	99	49.444	Lepisosteus_oculatus
ENSMALG00000009000	r3hdm1	87	66.959	ENSLAFG00000009065	R3HDM1	98	66.006	Loxodonta_africana
ENSMALG00000009000	r3hdm1	91	60.476	ENSMFAG00000030331	R3HDM1	99	60.238	Macaca_fascicularis
ENSMALG00000009000	r3hdm1	91	58.065	ENSMMUG00000009844	R3HDM1	99	58.065	Macaca_mulatta
ENSMALG00000009000	r3hdm1	91	60.476	ENSMNEG00000027793	R3HDM1	99	60.238	Macaca_nemestrina
ENSMALG00000009000	r3hdm1	91	58.065	ENSMLEG00000043189	R3HDM1	99	58.065	Mandrillus_leucophaeus
ENSMALG00000009000	r3hdm1	90	87.911	ENSMAMG00000004532	r3hdm1	100	88.008	Mastacembelus_armatus
ENSMALG00000009000	r3hdm1	90	84.152	ENSMZEG00005003157	r3hdm1	100	84.253	Maylandia_zebra
ENSMALG00000009000	r3hdm1	99	46.074	ENSMGAG00000012461	R3HDM1	99	46.951	Meleagris_gallopavo
ENSMALG00000009000	r3hdm1	100	46.160	ENSMAUG00000010315	R3hdm1	100	65.306	Mesocricetus_auratus
ENSMALG00000009000	r3hdm1	91	57.816	ENSMICG00000005900	-	99	57.816	Microcebus_murinus
ENSMALG00000009000	r3hdm1	86	57.568	ENSMICG00000042655	-	96	57.568	Microcebus_murinus
ENSMALG00000009000	r3hdm1	91	46.147	ENSMODG00000000923	R3HDM1	96	46.293	Monodelphis_domestica
ENSMALG00000009000	r3hdm1	100	45.356	MGP_CAROLIEiJ_G0014543	R3hdm1	100	65.646	Mus_caroli
ENSMALG00000009000	r3hdm1	100	45.470	ENSMUSG00000056211	R3hdm1	100	65.646	Mus_musculus
ENSMALG00000009000	r3hdm1	100	45.188	MGP_PahariEiJ_G0027779	R3hdm1	100	65.306	Mus_pahari
ENSMALG00000009000	r3hdm1	100	45.356	MGP_SPRETEiJ_G0015350	R3hdm1	100	65.646	Mus_spretus
ENSMALG00000009000	r3hdm1	100	46.221	ENSMPUG00000002412	R3HDM1	99	46.413	Mustela_putorius_furo
ENSMALG00000009000	r3hdm1	100	45.883	ENSMLUG00000013824	R3HDM1	99	46.453	Myotis_lucifugus
ENSMALG00000009000	r3hdm1	91	58.065	ENSNLEG00000008622	R3HDM1	99	58.065	Nomascus_leucogenys
ENSMALG00000009000	r3hdm1	90	39.067	ENSMEUG00000011784	R3HDM1	100	39.244	Notamacropus_eugenii
ENSMALG00000009000	r3hdm1	99	44.613	ENSODEG00000008607	R3HDM1	100	64.626	Octodon_degus
ENSMALG00000009000	r3hdm1	94	80.132	ENSONIG00000012017	r3hdm1	98	80.697	Oreochromis_niloticus
ENSMALG00000009000	r3hdm1	100	44.406	ENSOANG00000007987	R3HDM1	99	44.914	Ornithorhynchus_anatinus
ENSMALG00000009000	r3hdm1	90	47.527	ENSOCUG00000017366	R3HDM1	98	47.674	Oryctolagus_cuniculus
ENSMALG00000009000	r3hdm1	90	73.256	ENSORLG00000004297	r3hdm1	100	73.740	Oryzias_latipes
ENSMALG00000009000	r3hdm1	90	73.353	ENSORLG00015017355	r3hdm1	100	73.740	Oryzias_latipes_hsok
ENSMALG00000009000	r3hdm1	99	46.702	ENSOGAG00000003136	R3HDM1	99	46.701	Otolemur_garnettii
ENSMALG00000009000	r3hdm1	100	46.127	ENSOARG00000010788	R3HDM1	99	46.441	Ovis_aries
ENSMALG00000009000	r3hdm1	91	58.065	ENSPPAG00000027858	R3HDM1	99	58.065	Pan_paniscus
ENSMALG00000009000	r3hdm1	91	57.568	ENSPPRG00000002626	R3HDM1	99	57.568	Panthera_pardus
ENSMALG00000009000	r3hdm1	91	57.816	ENSPTIG00000016581	R3HDM1	99	57.816	Panthera_tigris_altaica
ENSMALG00000009000	r3hdm1	91	58.065	ENSPTRG00000012494	R3HDM1	99	58.065	Pan_troglodytes
ENSMALG00000009000	r3hdm1	91	58.065	ENSPANG00000026448	R3HDM1	99	58.065	Papio_anubis
ENSMALG00000009000	r3hdm1	88	70.231	ENSPKIG00000004328	r3hdm1	90	72.368	Paramormyrops_kingsleyae
ENSMALG00000009000	r3hdm1	100	45.259	ENSPSIG00000012915	R3HDM1	99	46.002	Pelodiscus_sinensis
ENSMALG00000009000	r3hdm1	100	45.652	ENSPEMG00000015187	R3hdm1	100	65.306	Peromyscus_maniculatus_bairdii
ENSMALG00000009000	r3hdm1	89	38.288	ENSPMAG00000003369	-	99	39.644	Petromyzon_marinus
ENSMALG00000009000	r3hdm1	91	58.531	ENSPCIG00000002491	R3HDM1	99	58.294	Phascolarctos_cinereus
ENSMALG00000009000	r3hdm1	90	77.077	ENSPFOG00000015036	r3hdm1	100	77.173	Poecilia_formosa
ENSMALG00000009000	r3hdm1	90	74.549	ENSPLAG00000018042	r3hdm1	100	74.649	Poecilia_latipinna
ENSMALG00000009000	r3hdm1	90	74.374	ENSPMEG00000023947	r3hdm1	100	74.474	Poecilia_mexicana
ENSMALG00000009000	r3hdm1	90	77.049	ENSPREG00000007902	r3hdm1	100	77.435	Poecilia_reticulata
ENSMALG00000009000	r3hdm1	100	45.667	ENSPPYG00000012815	R3HDM1	99	45.628	Pongo_abelii
ENSMALG00000009000	r3hdm1	92	58.754	ENSPCAG00000006208	R3HDM1	94	58.284	Procavia_capensis
ENSMALG00000009000	r3hdm1	84	62.462	ENSPCOG00000012698	R3HDM1	98	62.462	Propithecus_coquereli
ENSMALG00000009000	r3hdm1	92	52.762	ENSPVAG00000006098	R3HDM1	99	41.197	Pteropus_vampyrus
ENSMALG00000009000	r3hdm1	83	72.876	ENSPNAG00000005436	R3HDM1	99	71.895	Pygocentrus_nattereri
ENSMALG00000009000	r3hdm1	89	69.355	ENSPNAG00000013952	r3hdm1	94	69.355	Pygocentrus_nattereri
ENSMALG00000009000	r3hdm1	100	45.137	ENSRNOG00000004099	R3hdm1	99	45.729	Rattus_norvegicus
ENSMALG00000009000	r3hdm1	81	71.583	ENSRBIG00000033317	R3HDM1	99	71.583	Rhinopithecus_bieti
ENSMALG00000009000	r3hdm1	91	58.065	ENSRROG00000034534	R3HDM1	99	58.065	Rhinopithecus_roxellana
ENSMALG00000009000	r3hdm1	91	57.816	ENSSBOG00000020389	R3HDM1	99	57.816	Saimiri_boliviensis_boliviensis
ENSMALG00000009000	r3hdm1	99	46.060	ENSSHAG00000016999	R3HDM1	99	46.288	Sarcophilus_harrisii
ENSMALG00000009000	r3hdm1	99	46.897	ENSSFOG00015019851	-	98	53.102	Scleropages_formosus
ENSMALG00000009000	r3hdm1	91	65.037	ENSSFOG00015014134	r3hdm1	99	64.303	Scleropages_formosus
ENSMALG00000009000	r3hdm1	100	79.786	ENSSMAG00000001669	r3hdm1	100	79.875	Scophthalmus_maximus
ENSMALG00000009000	r3hdm1	90	86.607	ENSSDUG00000010749	r3hdm1	100	86.905	Seriola_dumerili
ENSMALG00000009000	r3hdm1	100	85.740	ENSSLDG00000004499	r3hdm1	100	85.919	Seriola_lalandi_dorsalis
ENSMALG00000009000	r3hdm1	50	52.922	ENSSARG00000000352	-	51	52.597	Sorex_araneus
ENSMALG00000009000	r3hdm1	100	45.197	ENSSPUG00000004167	R3HDM1	99	46.494	Sphenodon_punctatus
ENSMALG00000009000	r3hdm1	90	86.395	ENSSPAG00000004648	r3hdm1	100	86.495	Stegastes_partitus
ENSMALG00000009000	r3hdm1	100	46.960	ENSSSCG00000015692	R3HDM1	99	54.750	Sus_scrofa
ENSMALG00000009000	r3hdm1	100	46.609	ENSTGUG00000011750	R3HDM1	99	46.962	Taeniopygia_guttata
ENSMALG00000009000	r3hdm1	90	75.504	ENSTRUG00000011654	r3hdm1	99	75.600	Takifugu_rubripes
ENSMALG00000009000	r3hdm1	88	71.601	ENSTNIG00000010362	r3hdm1	99	71.903	Tetraodon_nigroviridis
ENSMALG00000009000	r3hdm1	78	62.110	ENSTTRG00000003935	R3HDM1	83	50.822	Tursiops_truncatus
ENSMALG00000009000	r3hdm1	63	58.561	ENSUAMG00000024806	R3HDM1	93	57.816	Ursus_americanus
ENSMALG00000009000	r3hdm1	91	57.816	ENSUMAG00000005552	R3HDM1	99	57.816	Ursus_maritimus
ENSMALG00000009000	r3hdm1	83	61.637	ENSVPAG00000007333	R3HDM1	88	46.093	Vicugna_pacos
ENSMALG00000009000	r3hdm1	92	57.816	ENSVVUG00000006457	R3HDM1	99	57.816	Vulpes_vulpes
ENSMALG00000009000	r3hdm1	90	43.074	ENSXETG00000019330	r3hdm1	99	43.870	Xenopus_tropicalis
ENSMALG00000009000	r3hdm1	68	71.049	ENSXCOG00000017448	r3hdm1	93	73.307	Xiphophorus_couchianus
ENSMALG00000009000	r3hdm1	90	75.385	ENSXMAG00000007885	r3hdm1	100	77.115	Xiphophorus_maculatus