EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000011355 (Gene tree)
Gene ID: 109971310
Gene Symbol: xrn2
Alias: wu:fb38g12|wu:fj53d06|zgc:55717
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 33518 bases
Position: chrKV884908.1:667449-700966
Accession: 109971310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000016397	XRN_N	PF03159.18	9.9e-102	1	1
ENSMALP00000016382	XRN_N	PF03159.18	2.9e-101	1	1
ENSMALP00000016296	XRN_N	PF03159.18	2.2e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000016727	-	1656	-	ENSMALP00000016397	551 (aa)	-	-
ENSMALT00000016712	-	2664	-	ENSMALP00000016382	887 (aa)	-	-
ENSMALT00000016625	-	2601	XM_020619459	ENSMALP00000016296	866 (aa)	XP_020475115	-

Gene Model

Click here to download ENSMALG00000011355's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03008	Ribosome biogenesis in eukaryotes	KEGG
malb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000011355's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000011355	xrn2	99	72.022	ENSG00000088930	XRN2	91	72.022	Homo_sapiens
ENSMALG00000011355	xrn2	95	92.898	ENSAPOG00000009818	xrn2	89	88.623	Acanthochromis_polyacanthus
ENSMALG00000011355	xrn2	99	72.360	ENSAMEG00000012581	XRN2	91	72.360	Ailuropoda_melanoleuca
ENSMALG00000011355	xrn2	95	89.655	ENSACIG00000015047	xrn2	95	89.313	Amphilophus_citrinellus
ENSMALG00000011355	xrn2	95	93.090	ENSAOCG00000023632	xrn2	94	89.988	Amphiprion_ocellaris
ENSMALG00000011355	xrn2	95	92.898	ENSAPEG00000014871	xrn2	94	89.867	Amphiprion_percula
ENSMALG00000011355	xrn2	99	89.534	ENSATEG00000001273	xrn2	91	89.534	Anabas_testudineus
ENSMALG00000011355	xrn2	97	72.769	ENSAPLG00000013869	XRN2	91	72.769	Anas_platyrhynchos
ENSMALG00000011355	xrn2	99	72.921	ENSACAG00000005565	XRN2	91	72.921	Anolis_carolinensis
ENSMALG00000011355	xrn2	95	76.291	ENSANAG00000020126	XRN2	91	72.135	Aotus_nancymaae
ENSMALG00000011355	xrn2	99	85.118	ENSACLG00000010522	xrn2	99	85.118	Astatotilapia_calliptera
ENSMALG00000011355	xrn2	95	87.548	ENSAMXG00000018301	xrn2	94	83.976	Astyanax_mexicanus
ENSMALG00000011355	xrn2	95	75.908	ENSBTAG00000011304	XRN2	91	71.493	Bos_taurus
ENSMALG00000011355	xrn2	95	56.169	WBGene00006964	xrn-2	89	53.143	Caenorhabditis_elegans
ENSMALG00000011355	xrn2	100	74.186	ENSCJAG00000005611	XRN2	91	72.135	Callithrix_jacchus
ENSMALG00000011355	xrn2	99	72.360	ENSCAFG00000005185	XRN2	91	72.360	Canis_familiaris
ENSMALG00000011355	xrn2	99	72.360	ENSCAFG00020027479	XRN2	91	72.360	Canis_lupus_dingo
ENSMALG00000011355	xrn2	99	71.493	ENSCHIG00000006921	XRN2	91	71.493	Capra_hircus
ENSMALG00000011355	xrn2	95	76.291	ENSTSYG00000008315	XRN2	91	72.135	Carlito_syrichta
ENSMALG00000011355	xrn2	95	63.077	ENSCAPG00000010773	XRN2	88	62.012	Cavia_aperea
ENSMALG00000011355	xrn2	99	72.697	ENSCPOG00000009407	XRN2	91	72.697	Cavia_porcellus
ENSMALG00000011355	xrn2	99	72.022	ENSCATG00000040350	XRN2	92	72.022	Cercocebus_atys
ENSMALG00000011355	xrn2	99	72.360	ENSCLAG00000013419	XRN2	91	72.360	Chinchilla_lanigera
ENSMALG00000011355	xrn2	100	74.096	ENSCSAG00000011094	XRN2	91	72.022	Chlorocebus_sabaeus
ENSMALG00000011355	xrn2	66	87.634	ENSCHOG00000013404	XRN2	63	87.634	Choloepus_hoffmanni
ENSMALG00000011355	xrn2	95	77.629	ENSCPBG00000023533	XRN2	91	73.453	Chrysemys_picta_bellii
ENSMALG00000011355	xrn2	92	66.142	ENSCING00000022336	-	100	60.165	Ciona_intestinalis
ENSMALG00000011355	xrn2	89	70.000	ENSCSAVG00000011217	-	93	71.084	Ciona_savignyi
ENSMALG00000011355	xrn2	99	72.022	ENSCANG00000040240	XRN2	91	72.022	Colobus_angolensis_palliatus
ENSMALG00000011355	xrn2	99	72.697	ENSCGRG00001010676	Xrn2	93	72.697	Cricetulus_griseus_chok1gshd
ENSMALG00000011355	xrn2	97	71.875	ENSCGRG00000006378	Xrn2	90	71.875	Cricetulus_griseus_crigri
ENSMALG00000011355	xrn2	95	79.079	ENSCSEG00000005628	xrn2	100	78.887	Cynoglossus_semilaevis
ENSMALG00000011355	xrn2	95	93.090	ENSCVAG00000018999	xrn2	98	92.925	Cyprinodon_variegatus
ENSMALG00000011355	xrn2	100	84.643	ENSDARG00000101900	xrn2	99	84.658	Danio_rerio
ENSMALG00000011355	xrn2	99	72.216	ENSDNOG00000001895	XRN2	91	72.216	Dasypus_novemcinctus
ENSMALG00000011355	xrn2	95	76.099	ENSDORG00000005434	Xrn2	91	71.011	Dipodomys_ordii
ENSMALG00000011355	xrn2	94	55.409	FBgn0031868	Rat1	92	54.124	Drosophila_melanogaster
ENSMALG00000011355	xrn2	91	79.805	ENSETEG00000001740	XRN2	84	79.805	Echinops_telfairi
ENSMALG00000011355	xrn2	95	73.019	ENSEBUG00000016136	xrn2	100	69.502	Eptatretus_burgeri
ENSMALG00000011355	xrn2	95	76.291	ENSEASG00005002484	XRN2	90	72.862	Equus_asinus_asinus
ENSMALG00000011355	xrn2	92	84.615	ENSECAG00000018988	XRN2	86	84.615	Equus_caballus
ENSMALG00000011355	xrn2	73	88.000	ENSEEUG00000009265	XRN2	67	88.000	Erinaceus_europaeus
ENSMALG00000011355	xrn2	95	89.060	ENSELUG00000000552	xrn2	99	80.455	Esox_lucius
ENSMALG00000011355	xrn2	95	76.291	ENSFCAG00000007970	XRN2	91	72.135	Felis_catus
ENSMALG00000011355	xrn2	95	78.119	ENSFALG00000004508	XRN2	91	73.393	Ficedula_albicollis
ENSMALG00000011355	xrn2	99	72.360	ENSFDAG00000016311	XRN2	91	72.360	Fukomys_damarensis
ENSMALG00000011355	xrn2	95	83.716	ENSFHEG00000013039	xrn2	98	83.716	Fundulus_heteroclitus
ENSMALG00000011355	xrn2	85	87.872	ENSGMOG00000013436	xrn2	100	79.712	Gadus_morhua
ENSMALG00000011355	xrn2	95	77.543	ENSGALG00000008372	XRN2	91	72.379	Gallus_gallus
ENSMALG00000011355	xrn2	95	91.363	ENSGAFG00000014284	xrn2	99	86.348	Gambusia_affinis
ENSMALG00000011355	xrn2	95	88.910	ENSGACG00000011870	xrn2	96	88.868	Gasterosteus_aculeatus
ENSMALG00000011355	xrn2	99	73.453	ENSGAGG00000004884	XRN2	91	73.453	Gopherus_agassizii
ENSMALG00000011355	xrn2	99	71.910	ENSGGOG00000013738	XRN2	91	71.910	Gorilla_gorilla
ENSMALG00000011355	xrn2	94	88.269	ENSHBUG00000005077	xrn2	94	88.269	Haplochromis_burtoni
ENSMALG00000011355	xrn2	99	70.979	ENSHGLG00000014831	XRN2	91	70.979	Heterocephalus_glaber_female
ENSMALG00000011355	xrn2	99	70.979	ENSHGLG00100013130	XRN2	91	70.979	Heterocephalus_glaber_male
ENSMALG00000011355	xrn2	99	85.114	ENSHCOG00000011994	xrn2	95	81.356	Hippocampus_comes
ENSMALG00000011355	xrn2	95	88.123	ENSIPUG00000006639	xrn2	91	81.818	Ictalurus_punctatus
ENSMALG00000011355	xrn2	99	72.584	ENSSTOG00000000589	XRN2	91	72.584	Ictidomys_tridecemlineatus
ENSMALG00000011355	xrn2	99	72.697	ENSJJAG00000022128	Xrn2	91	72.697	Jaculus_jaculus
ENSMALG00000011355	xrn2	95	87.908	ENSLBEG00000010041	xrn2	100	87.908	Labrus_bergylta
ENSMALG00000011355	xrn2	98	73.257	ENSLACG00000008307	XRN2	97	76.296	Latimeria_chalumnae
ENSMALG00000011355	xrn2	94	83.462	ENSLOCG00000016874	xrn2	93	81.773	Lepisosteus_oculatus
ENSMALG00000011355	xrn2	95	76.482	ENSLAFG00000014624	XRN2	91	72.472	Loxodonta_africana
ENSMALG00000011355	xrn2	99	72.022	ENSMFAG00000038122	XRN2	91	72.022	Macaca_fascicularis
ENSMALG00000011355	xrn2	99	72.022	ENSMMUG00000011405	XRN2	91	72.022	Macaca_mulatta
ENSMALG00000011355	xrn2	99	71.910	ENSMNEG00000040626	XRN2	91	71.910	Macaca_nemestrina
ENSMALG00000011355	xrn2	99	71.910	ENSMLEG00000041897	XRN2	91	71.910	Mandrillus_leucophaeus
ENSMALG00000011355	xrn2	95	94.626	ENSMAMG00000008633	xrn2	90	90.330	Mastacembelus_armatus
ENSMALG00000011355	xrn2	95	91.363	ENSMZEG00005022362	xrn2	98	87.472	Maylandia_zebra
ENSMALG00000011355	xrn2	95	76.571	ENSMGAG00000003196	XRN2	91	71.942	Meleagris_gallopavo
ENSMALG00000011355	xrn2	100	74.819	ENSMAUG00000021842	Xrn2	91	72.921	Mesocricetus_auratus
ENSMALG00000011355	xrn2	95	76.482	ENSMICG00000008126	XRN2	91	72.022	Microcebus_murinus
ENSMALG00000011355	xrn2	99	72.697	ENSMOCG00000012588	Xrn2	91	72.697	Microtus_ochrogaster
ENSMALG00000011355	xrn2	95	91.939	ENSMMOG00000017576	xrn2	98	87.260	Mola_mola
ENSMALG00000011355	xrn2	100	72.370	ENSMODG00000006163	XRN2	91	72.553	Monodelphis_domestica
ENSMALG00000011355	xrn2	95	76.482	MGP_CAROLIEiJ_G0024400	Xrn2	91	72.247	Mus_caroli
ENSMALG00000011355	xrn2	95	76.482	ENSMUSG00000027433	Xrn2	91	72.360	Mus_musculus
ENSMALG00000011355	xrn2	95	76.482	MGP_PahariEiJ_G0025843	Xrn2	91	72.247	Mus_pahari
ENSMALG00000011355	xrn2	95	76.482	MGP_SPRETEiJ_G0025318	Xrn2	94	85.149	Mus_spretus
ENSMALG00000011355	xrn2	95	76.291	ENSMPUG00000001198	XRN2	85	71.003	Mustela_putorius_furo
ENSMALG00000011355	xrn2	95	76.245	ENSMLUG00000001536	XRN2	91	72.216	Myotis_lucifugus
ENSMALG00000011355	xrn2	100	74.819	ENSNGAG00000018138	Xrn2	91	72.697	Nannospalax_galili
ENSMALG00000011355	xrn2	95	91.747	ENSNBRG00000008062	xrn2	98	87.699	Neolamprologus_brichardi
ENSMALG00000011355	xrn2	99	72.022	ENSNLEG00000009991	XRN2	91	72.022	Nomascus_leucogenys
ENSMALG00000011355	xrn2	56	86.667	ENSMEUG00000008622	-	53	86.667	Notamacropus_eugenii
ENSMALG00000011355	xrn2	66	71.579	ENSOPRG00000001397	-	63	71.579	Ochotona_princeps
ENSMALG00000011355	xrn2	96	66.822	ENSODEG00000000860	-	91	66.706	Octodon_degus
ENSMALG00000011355	xrn2	99	72.135	ENSODEG00000010745	-	91	72.135	Octodon_degus
ENSMALG00000011355	xrn2	100	86.972	ENSONIG00000018720	xrn2	93	86.731	Oreochromis_niloticus
ENSMALG00000011355	xrn2	100	71.655	ENSOANG00000015673	XRN2	89	73.333	Ornithorhynchus_anatinus
ENSMALG00000011355	xrn2	99	72.584	ENSOCUG00000013468	XRN2	91	72.584	Oryctolagus_cuniculus
ENSMALG00000011355	xrn2	95	90.211	ENSORLG00000017213	xrn2	98	84.738	Oryzias_latipes
ENSMALG00000011355	xrn2	95	90.211	ENSORLG00020001824	xrn2	91	84.414	Oryzias_latipes_hni
ENSMALG00000011355	xrn2	95	89.827	ENSORLG00015019747	xrn2	91	83.845	Oryzias_latipes_hsok
ENSMALG00000011355	xrn2	95	89.827	ENSOMEG00000019820	xrn2	96	85.887	Oryzias_melastigma
ENSMALG00000011355	xrn2	99	72.360	ENSOGAG00000001068	XRN2	91	72.360	Otolemur_garnettii
ENSMALG00000011355	xrn2	97	70.983	ENSOARG00000004443	XRN2	91	70.983	Ovis_aries
ENSMALG00000011355	xrn2	99	71.910	ENSPPAG00000033549	XRN2	91	71.910	Pan_paniscus
ENSMALG00000011355	xrn2	95	76.291	ENSPPRG00000008732	XRN2	91	72.135	Panthera_pardus
ENSMALG00000011355	xrn2	97	71.759	ENSPTIG00000015683	XRN2	88	71.759	Panthera_tigris_altaica
ENSMALG00000011355	xrn2	99	71.910	ENSPTRG00000013308	XRN2	91	71.910	Pan_troglodytes
ENSMALG00000011355	xrn2	99	72.022	ENSPANG00000018088	XRN2	91	72.022	Papio_anubis
ENSMALG00000011355	xrn2	95	86.756	ENSPKIG00000016889	xrn2	95	82.971	Paramormyrops_kingsleyae
ENSMALG00000011355	xrn2	85	77.612	ENSPSIG00000014666	XRN2	99	75.321	Pelodiscus_sinensis
ENSMALG00000011355	xrn2	95	76.291	ENSPEMG00000000111	Xrn2	91	72.247	Peromyscus_maniculatus_bairdii
ENSMALG00000011355	xrn2	60	74.118	ENSPMAG00000002576	xrn2	99	74.118	Petromyzon_marinus
ENSMALG00000011355	xrn2	100	85.887	ENSPFOG00000004182	xrn2	90	85.358	Poecilia_formosa
ENSMALG00000011355	xrn2	95	90.979	ENSPLAG00000007351	xrn2	98	85.893	Poecilia_latipinna
ENSMALG00000011355	xrn2	93	84.885	ENSPMEG00000011798	xrn2	90	84.885	Poecilia_mexicana
ENSMALG00000011355	xrn2	95	91.363	ENSPREG00000012452	xrn2	97	85.682	Poecilia_reticulata
ENSMALG00000011355	xrn2	100	73.976	ENSPPYG00000010755	XRN2	91	71.685	Pongo_abelii
ENSMALG00000011355	xrn2	95	76.099	ENSPCAG00000011191	XRN2	91	68.049	Procavia_capensis
ENSMALG00000011355	xrn2	99	65.843	ENSPCOG00000016468	XRN2	90	65.843	Propithecus_coquereli
ENSMALG00000011355	xrn2	92	64.184	ENSPVAG00000004596	XRN2	84	64.184	Pteropus_vampyrus
ENSMALG00000011355	xrn2	99	85.118	ENSPNYG00000001765	xrn2	98	85.877	Pundamilia_nyererei
ENSMALG00000011355	xrn2	95	86.782	ENSPNAG00000010956	xrn2	95	81.775	Pygocentrus_nattereri
ENSMALG00000011355	xrn2	99	73.034	ENSRNOG00000011785	Xrn2	91	73.034	Rattus_norvegicus
ENSMALG00000011355	xrn2	95	75.908	ENSRBIG00000036193	XRN2	100	74.489	Rhinopithecus_bieti
ENSMALG00000011355	xrn2	99	72.022	ENSRROG00000044400	XRN2	82	72.022	Rhinopithecus_roxellana
ENSMALG00000011355	xrn2	80	50.763	YOR048C	RAT1	64	53.382	Saccharomyces_cerevisiae
ENSMALG00000011355	xrn2	95	76.291	ENSSBOG00000021014	XRN2	91	72.247	Saimiri_boliviensis_boliviensis
ENSMALG00000011355	xrn2	95	86.948	ENSSFOG00015001091	xrn2	90	82.609	Scleropages_formosus
ENSMALG00000011355	xrn2	95	91.188	ENSSMAG00000007834	xrn2	89	86.833	Scophthalmus_maximus
ENSMALG00000011355	xrn2	99	88.448	ENSSDUG00000012802	xrn2	100	88.448	Seriola_dumerili
ENSMALG00000011355	xrn2	95	94.242	ENSSLDG00000021273	xrn2	98	88.977	Seriola_lalandi_dorsalis
ENSMALG00000011355	xrn2	60	88.000	ENSSARG00000005859	-	55	88.000	Sorex_araneus
ENSMALG00000011355	xrn2	95	78.817	ENSSPUG00000005485	XRN2	88	72.018	Sphenodon_punctatus
ENSMALG00000011355	xrn2	95	92.514	ENSSPAG00000016027	xrn2	94	89.023	Stegastes_partitus
ENSMALG00000011355	xrn2	95	75.717	ENSSSCG00000007109	XRN2	91	70.449	Sus_scrofa
ENSMALG00000011355	xrn2	99	72.328	ENSTGUG00000007535	XRN2	91	72.328	Taeniopygia_guttata
ENSMALG00000011355	xrn2	95	89.443	ENSTRUG00000015489	xrn2	88	85.000	Takifugu_rubripes
ENSMALG00000011355	xrn2	99	83.977	ENSTNIG00000010712	xrn2	90	83.977	Tetraodon_nigroviridis
ENSMALG00000011355	xrn2	99	71.910	ENSTBEG00000004119	XRN2	91	71.910	Tupaia_belangeri
ENSMALG00000011355	xrn2	95	75.335	ENSTTRG00000009087	XRN2	84	76.232	Tursiops_truncatus
ENSMALG00000011355	xrn2	99	72.360	ENSUAMG00000024634	XRN2	92	72.069	Ursus_americanus
ENSMALG00000011355	xrn2	97	71.991	ENSUMAG00000004012	XRN2	86	71.991	Ursus_maritimus
ENSMALG00000011355	xrn2	79	82.524	ENSVPAG00000010694	XRN2	75	82.524	Vicugna_pacos
ENSMALG00000011355	xrn2	99	72.360	ENSVVUG00000012178	XRN2	91	72.360	Vulpes_vulpes
ENSMALG00000011355	xrn2	98	75.775	ENSXETG00000023501	xrn2	90	75.775	Xenopus_tropicalis
ENSMALG00000011355	xrn2	95	91.747	ENSXMAG00000000242	xrn2	92	88.321	Xiphophorus_maculatus