EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000011410 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 10613 bases
Position: chrKV884722.1:4247728-4258340
Accession: 109958775
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000016263	zf-C2H2	PF00096.26	2.4e-15	1	3
ENSMALP00000016263	zf-C2H2	PF00096.26	2.4e-15	2	3
ENSMALP00000016263	zf-C2H2	PF00096.26	2.4e-15	3	3
ENSMALP00000016263	zf-met	PF12874.7	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000016600	-	1354	XM_020597679	ENSMALP00000016271	451 (aa)	XP_020453335	-
ENSMALT00000016592	-	1809	-	ENSMALP00000016263	602 (aa)	-	-

Gene Model

Click here to download ENSMALG00000011410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000011410's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000011410	prdm1b	97	36.267	ENSAPOG00000014135	-	81	35.952	Acanthochromis_polyacanthus
ENSMALG00000011410	prdm1b	73	68.090	ENSAPOG00000022084	prdm1b	93	68.764	Acanthochromis_polyacanthus
ENSMALG00000011410	prdm1b	62	61.972	ENSACIG00000009747	-	81	35.532	Amphilophus_citrinellus
ENSMALG00000011410	prdm1b	98	75.372	ENSACIG00000014426	prdm1b	97	75.207	Amphilophus_citrinellus
ENSMALG00000011410	prdm1b	93	72.408	ENSAOCG00000002230	prdm1b	97	71.601	Amphiprion_ocellaris
ENSMALG00000011410	prdm1b	99	69.601	ENSAPEG00000019826	prdm1b	97	69.934	Amphiprion_percula
ENSMALG00000011410	prdm1b	99	80.890	ENSATEG00000006924	prdm1b	97	81.054	Anabas_testudineus
ENSMALG00000011410	prdm1b	95	80.696	ENSACLG00000005487	prdm1b	89	80.522	Astatotilapia_calliptera
ENSMALG00000011410	prdm1b	99	72.968	ENSCVAG00000016746	prdm1b	96	73.632	Cyprinodon_variegatus
ENSMALG00000011410	prdm1b	99	74.419	ENSFHEG00000019848	prdm1b	97	74.086	Fundulus_heteroclitus
ENSMALG00000011410	prdm1b	97	74.056	ENSGAFG00000016191	prdm1b	96	74.220	Gambusia_affinis
ENSMALG00000011410	prdm1b	94	67.752	ENSGACG00000002716	prdm1b	86	69.494	Gasterosteus_aculeatus
ENSMALG00000011410	prdm1b	95	80.870	ENSHBUG00000001475	prdm1b	95	80.696	Haplochromis_burtoni
ENSMALG00000011410	prdm1b	99	72.277	ENSHCOG00000003617	prdm1b	97	72.112	Hippocampus_comes
ENSMALG00000011410	prdm1b	90	68.539	ENSIPUG00000013740	prdm1b	91	53.333	Ictalurus_punctatus
ENSMALG00000011410	prdm1b	94	71.103	ENSKMAG00000011218	prdm1b	90	70.928	Kryptolebias_marmoratus
ENSMALG00000011410	prdm1b	95	36.753	ENSKMAG00000016247	-	79	36.810	Kryptolebias_marmoratus
ENSMALG00000011410	prdm1b	99	79.575	ENSLBEG00000020955	prdm1b	97	79.412	Labrus_bergylta
ENSMALG00000011410	prdm1b	98	52.560	ENSLOCG00000004978	prdm1b	87	47.731	Lepisosteus_oculatus
ENSMALG00000011410	prdm1b	99	77.907	ENSMZEG00005026361	prdm1b	92	77.741	Maylandia_zebra
ENSMALG00000011410	prdm1b	96	79.862	ENSMMOG00000013458	prdm1b	96	79.725	Mola_mola
ENSMALG00000011410	prdm1b	93	63.407	ENSONIG00000013583	prdm1b	77	86.047	Oreochromis_niloticus
ENSMALG00000011410	prdm1b	98	65.273	ENSORLG00000010025	prdm1b	97	64.952	Oryzias_latipes
ENSMALG00000011410	prdm1b	93	66.610	ENSORLG00015009022	prdm1b	93	66.054	Oryzias_latipes_hsok
ENSMALG00000011410	prdm1b	99	46.333	ENSPKIG00000022335	prdm1b	71	75.000	Paramormyrops_kingsleyae
ENSMALG00000011410	prdm1b	88	67.748	ENSPFOG00000003103	prdm1b	85	65.724	Poecilia_formosa
ENSMALG00000011410	prdm1b	99	75.610	ENSPLAG00000018491	prdm1b	97	75.447	Poecilia_latipinna
ENSMALG00000011410	prdm1b	99	76.898	ENSPMEG00000007869	prdm1b	97	76.733	Poecilia_mexicana
ENSMALG00000011410	prdm1b	99	75.161	ENSPREG00000011327	prdm1b	97	74.839	Poecilia_reticulata
ENSMALG00000011410	prdm1b	93	41.137	ENSPNAG00000028442	prdm1a	76	39.344	Pygocentrus_nattereri
ENSMALG00000011410	prdm1b	92	59.821	ENSSFOG00015021896	prdm1b	77	59.643	Scleropages_formosus
ENSMALG00000011410	prdm1b	99	77.250	ENSSMAG00000020467	prdm1b	97	77.087	Scophthalmus_maximus
ENSMALG00000011410	prdm1b	99	81.178	ENSSDUG00000020610	prdm1b	97	81.015	Seriola_dumerili
ENSMALG00000011410	prdm1b	97	35.650	ENSSLDG00000001957	-	81	35.650	Seriola_lalandi_dorsalis
ENSMALG00000011410	prdm1b	99	81.353	ENSSLDG00000021973	prdm1b	99	81.188	Seriola_lalandi_dorsalis
ENSMALG00000011410	prdm1b	89	38.399	ENSSPAG00000009830	-	74	38.399	Stegastes_partitus
ENSMALG00000011410	prdm1b	99	75.793	ENSSPAG00000000803	prdm1b	97	75.960	Stegastes_partitus
ENSMALG00000011410	prdm1b	99	74.503	ENSXCOG00000018920	prdm1b	85	74.338	Xiphophorus_couchianus
ENSMALG00000011410	prdm1b	93	75.789	ENSXMAG00000016765	prdm1b	92	75.614	Xiphophorus_maculatus