EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMALG00000011474 (Gene tree)
Gene ID
109955017
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Monopterus_albus
Status
putative
Strand
Minus strand
Length
3864 bases
Position
chrKV884701.1:2248957-2252820
Accession
109955017
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMALP00000016390CPSF73-100_CPF11718.82.2e-4311
ENSMALP00000016390Beta-CaspPF10996.86.6e-3411
ENSMALP00000016390Lactamase_BPF00753.273.5e-0811
ENSMALP00000016390RMMBLPF07521.124.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMALT00000016720CPSF3 (1 of many)-2011851XM_020590773ENSMALP00000016390616 (aa)XP_020446429-
Gene Model
Click here to download ENSMALG00000011474's gene model file
Pathways
Pathway IDPathway NameSource
malb03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000011474's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMALG00000011474CPSF39984.882ENSMALG00000016416cpsf39684.868
ENSMALG00000011474CPSF38633.210ENSMALG00000002210ints118733.210
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMALG00000011474CPSF39983.438ENSG00000119203CPSF39190.698Homo_sapiens
ENSMALG00000011474CPSF37596.739ENSAPOG00000012241CPSF38696.739Acanthochromis_polyacanthus
ENSMALG00000011474CPSF39983.780ENSAPOG00000022087cpsf39286.856Acanthochromis_polyacanthus
ENSMALG00000011474CPSF39983.438ENSAMEG00000008493CPSF39383.438Ailuropoda_melanoleuca
ENSMALG00000011474CPSF39583.744ENSACIG00000009846cpsf39683.744Amphilophus_citrinellus
ENSMALG00000011474CPSF39692.182ENSACIG00000023663CPSF39692.182Amphilophus_citrinellus
ENSMALG00000011474CPSF310091.420ENSAOCG00000010077CPSF39691.639Amphiprion_ocellaris
ENSMALG00000011474CPSF39983.622ENSAOCG00000022056cpsf39283.622Amphiprion_ocellaris
ENSMALG00000011474CPSF310091.420ENSAPEG00000021167CPSF39691.475Amphiprion_percula
ENSMALG00000011474CPSF39687.288ENSAPEG00000019526cpsf39683.882Amphiprion_percula
ENSMALG00000011474CPSF39984.409ENSATEG00000003959cpsf39684.704Anabas_testudineus
ENSMALG00000011474CPSF310084.555ENSATEG00000014525CPSF39184.555Anabas_testudineus
ENSMALG00000011474CPSF39983.438ENSAPLG00000006941CPSF39383.438Anas_platyrhynchos
ENSMALG00000011474CPSF39981.435ENSACAG00000001759CPSF39981.435Anolis_carolinensis
ENSMALG00000011474CPSF39978.594ENSANAG00000031254CPSF39478.594Aotus_nancymaae
ENSMALG00000011474CPSF39692.508ENSACLG00000018846CPSF39692.508Astatotilapia_calliptera
ENSMALG00000011474CPSF39983.937ENSACLG00000014484cpsf39684.539Astatotilapia_calliptera
ENSMALG00000011474CPSF310084.243ENSAMXG00000004786cpsf39684.039Astyanax_mexicanus
ENSMALG00000011474CPSF39983.594ENSBTAG00000019735CPSF39383.594Bos_taurus
ENSMALG00000011474CPSF39456.040WBGene00013460cpsf-38356.040Caenorhabditis_elegans
ENSMALG00000011474CPSF39983.125ENSCJAG00000006276CPSF39383.125Callithrix_jacchus
ENSMALG00000011474CPSF39983.438ENSCAFG00000003375CPSF38883.438Canis_familiaris
ENSMALG00000011474CPSF39388.368ENSCAFG00020026799CPSF39288.368Canis_lupus_dingo
ENSMALG00000011474CPSF39983.594ENSCHIG00000013973CPSF39383.594Capra_hircus
ENSMALG00000011474CPSF39983.594ENSTSYG00000002967CPSF39383.594Carlito_syrichta
ENSMALG00000011474CPSF39983.438ENSCAPG00000013851CPSF39583.438Cavia_aperea
ENSMALG00000011474CPSF39983.438ENSCPOG00000011299CPSF39383.438Cavia_porcellus
ENSMALG00000011474CPSF39983.438ENSCCAG00000036730CPSF39483.438Cebus_capucinus
ENSMALG00000011474CPSF39981.123ENSCATG00000014770CPSF39190.875Cercocebus_atys
ENSMALG00000011474CPSF39983.125ENSCLAG00000002727CPSF39383.125Chinchilla_lanigera
ENSMALG00000011474CPSF39975.000ENSCSAG00000007125CPSF39275.000Chlorocebus_sabaeus
ENSMALG00000011474CPSF38962.783ENSCHOG00000000180CPSF38562.783Choloepus_hoffmanni
ENSMALG00000011474CPSF39983.281ENSCPBG00000014074CPSF39283.281Chrysemys_picta_bellii
ENSMALG00000011474CPSF39964.945ENSCING00000007214-9164.945Ciona_intestinalis
ENSMALG00000011474CPSF39972.446ENSCANG00000034435CPSF39272.446Colobus_angolensis_palliatus
ENSMALG00000011474CPSF39983.125ENSCGRG00001013134Cpsf39383.125Cricetulus_griseus_chok1gshd
ENSMALG00000011474CPSF39983.125ENSCGRG00000018319Cpsf39383.125Cricetulus_griseus_crigri
ENSMALG00000011474CPSF310088.162ENSCSEG00000002021CPSF39888.162Cynoglossus_semilaevis
ENSMALG00000011474CPSF310090.640ENSCVAG00000015067CPSF39290.640Cyprinodon_variegatus
ENSMALG00000011474CPSF310085.179ENSDARG00000027649cpsf39285.179Danio_rerio
ENSMALG00000011474CPSF39982.371ENSDNOG00000008940CPSF38882.371Dasypus_novemcinctus
ENSMALG00000011474CPSF39686.847ENSDORG00000014263Cpsf39086.847Dipodomys_ordii
ENSMALG00000011474CPSF39962.618FBgn0261065Cpsf739162.618Drosophila_melanogaster
ENSMALG00000011474CPSF39677.234ENSETEG00000003893CPSF39077.234Echinops_telfairi
ENSMALG00000011474CPSF39973.596ENSEBUG00000009018cpsf39273.596Eptatretus_burgeri
ENSMALG00000011474CPSF39983.438ENSEASG00005003970CPSF39383.438Equus_asinus_asinus
ENSMALG00000011474CPSF39983.438ENSECAG00000019911CPSF38990.399Equus_caballus
ENSMALG00000011474CPSF39967.812ENSEEUG00000015422CPSF39367.812Erinaceus_europaeus
ENSMALG00000011474CPSF39986.385ENSELUG00000013775cpsf39687.745Esox_lucius
ENSMALG00000011474CPSF39983.594ENSFCAG00000007852CPSF39883.594Felis_catus
ENSMALG00000011474CPSF39983.281ENSFALG00000006572CPSF39883.281Ficedula_albicollis
ENSMALG00000011474CPSF39982.942ENSFDAG00000006317CPSF39282.942Fukomys_damarensis
ENSMALG00000011474CPSF36275.366ENSFHEG00000012186CPSF310075.366Fundulus_heteroclitus
ENSMALG00000011474CPSF39982.205ENSFHEG00000014774cpsf39282.205Fundulus_heteroclitus
ENSMALG00000011474CPSF39984.953ENSGMOG00000003157cpsf39284.953Gadus_morhua
ENSMALG00000011474CPSF39982.969ENSGALG00000016424CPSF39982.969Gallus_gallus
ENSMALG00000011474CPSF39990.923ENSGAFG00000008016CPSF39290.923Gambusia_affinis
ENSMALG00000011474CPSF39683.580ENSGAFG00000019449cpsf39683.580Gambusia_affinis
ENSMALG00000011474CPSF37280.342ENSGAGG00000025583CPSF39380.342Gopherus_agassizii
ENSMALG00000011474CPSF39983.438ENSGGOG00000001757CPSF39983.438Gorilla_gorilla
ENSMALG00000011474CPSF36286.486ENSHBUG00000014332CPSF310086.486Haplochromis_burtoni
ENSMALG00000011474CPSF39983.937ENSHBUG00000001188cpsf39684.539Haplochromis_burtoni
ENSMALG00000011474CPSF39982.786ENSHGLG00000000666CPSF39282.786Heterocephalus_glaber_female
ENSMALG00000011474CPSF39982.786ENSHGLG00100007765CPSF39282.786Heterocephalus_glaber_male
ENSMALG00000011474CPSF39983.019ENSHCOG00000007251cpsf39283.019Hippocampus_comes
ENSMALG00000011474CPSF39989.219ENSHCOG00000015957CPSF39189.219Hippocampus_comes
ENSMALG00000011474CPSF310084.555ENSIPUG00000023488cpsf39684.039Ictalurus_punctatus
ENSMALG00000011474CPSF39983.594ENSSTOG00000004476CPSF39383.594Ictidomys_tridecemlineatus
ENSMALG00000011474CPSF39982.656ENSJJAG00000023415Cpsf39382.656Jaculus_jaculus
ENSMALG00000011474CPSF39982.835ENSKMAG00000002806cpsf39282.835Kryptolebias_marmoratus
ENSMALG00000011474CPSF310090.952ENSKMAG00000007317CPSF39290.952Kryptolebias_marmoratus
ENSMALG00000011474CPSF39695.447ENSLBEG00000013492CPSF38995.447Labrus_bergylta
ENSMALG00000011474CPSF35882.022ENSLBEG00000015018-9482.022Labrus_bergylta
ENSMALG00000011474CPSF39980.650ENSLBEG00000020569cpsf38780.650Labrus_bergylta
ENSMALG00000011474CPSF310076.755ENSLACG00000008308CPSF39276.755Latimeria_chalumnae
ENSMALG00000011474CPSF39985.625ENSLOCG00000016823cpsf39285.625Lepisosteus_oculatus
ENSMALG00000011474CPSF39983.438ENSLAFG00000009467CPSF39383.438Loxodonta_africana
ENSMALG00000011474CPSF39983.281ENSMFAG00000001339CPSF39883.281Macaca_fascicularis
ENSMALG00000011474CPSF39983.281ENSMMUG00000018038CPSF39883.281Macaca_mulatta
ENSMALG00000011474CPSF39092.344ENSMNEG00000039447CPSF39292.344Macaca_nemestrina
ENSMALG00000011474CPSF39983.438ENSMLEG00000026825CPSF38395.059Mandrillus_leucophaeus
ENSMALG00000011474CPSF39692.370ENSMAMG00000008835CPSF39692.370Mastacembelus_armatus
ENSMALG00000011474CPSF39983.937ENSMAMG00000003076cpsf39685.714Mastacembelus_armatus
ENSMALG00000011474CPSF39983.937ENSMZEG00005014358cpsf39684.539Maylandia_zebra
ENSMALG00000011474CPSF310091.264ENSMZEG00005006258CPSF39692.508Maylandia_zebra
ENSMALG00000011474CPSF39982.969ENSMGAG00000013995CPSF39582.969Meleagris_gallopavo
ENSMALG00000011474CPSF35774.734ENSMAUG00000000166Cpsf39974.734Mesocricetus_auratus
ENSMALG00000011474CPSF39978.281ENSMICG00000002363CPSF39978.281Microcebus_murinus
ENSMALG00000011474CPSF39985.390ENSMOCG00000020067Cpsf39285.390Microtus_ochrogaster
ENSMALG00000011474CPSF37876.491ENSMMOG00000011923CPSF38576.491Mola_mola
ENSMALG00000011474CPSF39980.000ENSMMOG00000018212CPSF39680.000Mola_mola
ENSMALG00000011474CPSF39982.198ENSMODG00000014703CPSF39382.198Monodelphis_domestica
ENSMALG00000011474CPSF39982.812MGP_CAROLIEiJ_G0017640Cpsf39382.812Mus_caroli
ENSMALG00000011474CPSF39982.812ENSMUSG00000054309Cpsf39393.043Mus_musculus
ENSMALG00000011474CPSF39982.656MGP_PahariEiJ_G0029397Cpsf39382.656Mus_pahari
ENSMALG00000011474CPSF39982.812MGP_SPRETEiJ_G0018481Cpsf39382.812Mus_spretus
ENSMALG00000011474CPSF39983.412ENSMPUG00000013213CPSF39383.412Mustela_putorius_furo
ENSMALG00000011474CPSF39983.619ENSMLUG00000010636CPSF39383.619Myotis_lucifugus
ENSMALG00000011474CPSF39982.969ENSNGAG00000019836Cpsf39382.969Nannospalax_galili
ENSMALG00000011474CPSF39983.780ENSNBRG00000004770cpsf39684.375Neolamprologus_brichardi
ENSMALG00000011474CPSF39692.508ENSNBRG00000010525CPSF39692.508Neolamprologus_brichardi
ENSMALG00000011474CPSF39983.281ENSNLEG00000013359CPSF39883.281Nomascus_leucogenys
ENSMALG00000011474CPSF39955.469ENSMEUG00000013117-9355.659Notamacropus_eugenii
ENSMALG00000011474CPSF39974.335ENSOPRG00000008902CPSF39374.335Ochotona_princeps
ENSMALG00000011474CPSF39982.969ENSODEG00000003129CPSF39382.969Octodon_degus
ENSMALG00000011474CPSF39984.252ENSONIG00000018812cpsf39284.252Oreochromis_niloticus
ENSMALG00000011474CPSF38883.688ENSOANG00000008577CPSF39983.688Ornithorhynchus_anatinus
ENSMALG00000011474CPSF39983.281ENSOCUG00000003728CPSF39383.281Oryctolagus_cuniculus
ENSMALG00000011474CPSF39982.992ENSORLG00000018854cpsf39282.992Oryzias_latipes
ENSMALG00000011474CPSF39982.992ENSORLG00020013331cpsf39682.566Oryzias_latipes_hni
ENSMALG00000011474CPSF39982.992ENSORLG00015011017cpsf39682.730Oryzias_latipes_hsok
ENSMALG00000011474CPSF39982.835ENSOMEG00000010647cpsf38882.835Oryzias_melastigma
ENSMALG00000011474CPSF39973.125ENSOGAG00000001680CPSF39373.125Otolemur_garnettii
ENSMALG00000011474CPSF39983.594ENSOARG00000015073CPSF39383.594Ovis_aries
ENSMALG00000011474CPSF39983.438ENSPPAG00000042457CPSF38295.283Pan_paniscus
ENSMALG00000011474CPSF39983.594ENSPPRG00000016790CPSF39883.438Panthera_pardus
ENSMALG00000011474CPSF39983.594ENSPTIG00000003920CPSF39983.438Panthera_tigris_altaica
ENSMALG00000011474CPSF39983.438ENSPTRG00000011638CPSF38295.283Pan_troglodytes
ENSMALG00000011474CPSF39983.281ENSPANG00000016798CPSF38592.255Papio_anubis
ENSMALG00000011474CPSF39986.385ENSPKIG00000023646cpsf39886.385Paramormyrops_kingsleyae
ENSMALG00000011474CPSF39983.281ENSPSIG00000016144CPSF39383.281Pelodiscus_sinensis
ENSMALG00000011474CPSF39685.059ENSPMGG00000006141-9685.059Periophthalmus_magnuspinnatus
ENSMALG00000011474CPSF36286.486ENSPMGG00000015311CPSF310086.486Periophthalmus_magnuspinnatus
ENSMALG00000011474CPSF39983.438ENSPEMG00000017668Cpsf39383.281Peromyscus_maniculatus_bairdii
ENSMALG00000011474CPSF38087.045ENSPMAG00000004841cpsf39087.045Petromyzon_marinus
ENSMALG00000011474CPSF39687.015ENSPCIG00000009823CPSF39483.125Phascolarctos_cinereus
ENSMALG00000011474CPSF39990.297ENSPFOG00000010418-9290.297Poecilia_formosa
ENSMALG00000011474CPSF39982.547ENSPFOG00000015922cpsf39282.547Poecilia_formosa
ENSMALG00000011474CPSF39982.547ENSPLAG00000000882cpsf39282.547Poecilia_latipinna
ENSMALG00000011474CPSF36287.901ENSPLAG00000021300-9987.901Poecilia_latipinna
ENSMALG00000011474CPSF39982.704ENSPMEG00000018309cpsf39282.704Poecilia_mexicana
ENSMALG00000011474CPSF310082.371ENSPREG00000004482CPSF39182.371Poecilia_reticulata
ENSMALG00000011474CPSF39683.580ENSPREG00000014875cpsf39683.580Poecilia_reticulata
ENSMALG00000011474CPSF39978.906ENSPPYG00000012666CPSF39278.906Pongo_abelii
ENSMALG00000011474CPSF37965.102ENSPCAG00000015042CPSF37465.102Procavia_capensis
ENSMALG00000011474CPSF38684.034ENSPCOG00000023016CPSF38984.034Propithecus_coquereli
ENSMALG00000011474CPSF39983.412ENSPVAG00000005324CPSF39383.412Pteropus_vampyrus
ENSMALG00000011474CPSF39983.937ENSPNYG00000004405cpsf39684.539Pundamilia_nyererei
ENSMALG00000011474CPSF38698.485ENSPNYG00000021047CPSF38898.485Pundamilia_nyererei
ENSMALG00000011474CPSF310084.399ENSPNAG00000023060cpsf39685.505Pygocentrus_nattereri
ENSMALG00000011474CPSF310082.839ENSRNOG00000052418Cpsf39382.839Rattus_norvegicus
ENSMALG00000011474CPSF39980.000ENSRBIG00000041615CPSF39780.000Rhinopithecus_bieti
ENSMALG00000011474CPSF39983.438ENSRROG00000033792CPSF39383.438Rhinopithecus_roxellana
ENSMALG00000011474CPSF38942.289YLR277CYSH18042.289Saccharomyces_cerevisiae
ENSMALG00000011474CPSF39979.969ENSSBOG00000027263CPSF39279.969Saimiri_boliviensis_boliviensis
ENSMALG00000011474CPSF39983.125ENSSHAG00000007024CPSF39383.125Sarcophilus_harrisii
ENSMALG00000011474CPSF39986.854ENSSFOG00015002108cpsf39986.854Scleropages_formosus
ENSMALG00000011474CPSF39691.737ENSSMAG00000020534CPSF38691.737Scophthalmus_maximus
ENSMALG00000011474CPSF39984.094ENSSDUG00000002828cpsf38984.094Seriola_dumerili
ENSMALG00000011474CPSF310090.952ENSSDUG00000018498CPSF39692.508Seriola_dumerili
ENSMALG00000011474CPSF39984.252ENSSLDG00000008469cpsf38984.252Seriola_lalandi_dorsalis
ENSMALG00000011474CPSF310090.952ENSSLDG00000005234CPSF39693.432Seriola_lalandi_dorsalis
ENSMALG00000011474CPSF38980.612ENSSARG00000005186CPSF38380.612Sorex_araneus
ENSMALG00000011474CPSF39981.522ENSSPUG00000015525CPSF39381.522Sphenodon_punctatus
ENSMALG00000011474CPSF39984.252ENSSPAG00000018579cpsf39284.252Stegastes_partitus
ENSMALG00000011474CPSF310090.952ENSSPAG00000002906CPSF39692.939Stegastes_partitus
ENSMALG00000011474CPSF39983.438ENSSSCG00000020799CPSF39784.502Sus_scrofa
ENSMALG00000011474CPSF39983.125ENSTGUG00000013016CPSF39383.125Taeniopygia_guttata
ENSMALG00000011474CPSF39984.044ENSTRUG00000007030cpsf39084.044Takifugu_rubripes
ENSMALG00000011474CPSF36276.471ENSTRUG00000013905CPSF310076.471Takifugu_rubripes
ENSMALG00000011474CPSF38487.539ENSTBEG00000002707CPSF37787.539Tupaia_belangeri
ENSMALG00000011474CPSF38669.189ENSTTRG00000000861CPSF38069.189Tursiops_truncatus
ENSMALG00000011474CPSF39687.184ENSUAMG00000007535CPSF38487.184Ursus_americanus
ENSMALG00000011474CPSF39983.438ENSUMAG00000003676CPSF39290.580Ursus_maritimus
ENSMALG00000011474CPSF39685.666ENSVPAG00000008041CPSF39385.666Vicugna_pacos
ENSMALG00000011474CPSF39983.438ENSVVUG00000002194CPSF39383.438Vulpes_vulpes
ENSMALG00000011474CPSF39981.534ENSXETG00000008263cpsf39181.534Xenopus_tropicalis
ENSMALG00000011474CPSF39982.547ENSXCOG00000019695cpsf39282.547Xiphophorus_couchianus
ENSMALG00000011474CPSF35687.634ENSXCOG00000000957-8787.634Xiphophorus_couchianus
ENSMALG00000011474CPSF39982.547ENSXMAG00000009784cpsf39882.547Xiphophorus_maculatus
ENSMALG00000011474CPSF39990.767ENSXMAG00000027291CPSF39290.767Xiphophorus_maculatus

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