EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000012611 (Gene tree)
Gene ID: 109952667
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 4959 bases
Position: chrKV885171.1:40302-45260
Accession: 109952667
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000018081	zf-CCCH	PF00642.24	2.4e-21	1	2
ENSMALP00000018081	zf-CCCH	PF00642.24	2.4e-21	2	2
ENSMALP00000018101	zf-CCCH	PF00642.24	1.8e-20	1	2
ENSMALP00000018101	zf-CCCH	PF00642.24	1.8e-20	2	2
ENSMALP00000018101	zf-CCHC	PF00098.23	4e-06	1	1
ENSMALP00000018081	zf-CCHC	PF00098.23	4.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000018430	-	1188	XM_020587857	ENSMALP00000018081	266 (aa)	XP_020443513	UPI0009B3DAC2
ENSMALT00000018450	-	756	-	ENSMALP00000018101	251 (aa)	-	-

Gene Model

Click here to download ENSMALG00000012611's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000012611's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000012611	cpsf4	100	82.963	ENSG00000160917	CPSF4	100	96.429	Homo_sapiens
ENSMALG00000012611	cpsf4	71	84.270	ENSAPOG00000004921	cpsf4	100	84.270	Acanthochromis_polyacanthus
ENSMALG00000012611	cpsf4	100	82.963	ENSAMEG00000006252	CPSF4	100	82.963	Ailuropoda_melanoleuca
ENSMALG00000012611	cpsf4	100	84.586	ENSACIG00000009248	cpsf4	100	84.962	Amphilophus_citrinellus
ENSMALG00000012611	cpsf4	100	93.609	ENSAOCG00000019616	cpsf4	100	93.609	Amphiprion_ocellaris
ENSMALG00000012611	cpsf4	100	93.609	ENSAPEG00000011679	cpsf4	100	93.609	Amphiprion_percula
ENSMALG00000012611	cpsf4	100	93.633	ENSATEG00000007010	cpsf4	100	93.633	Anabas_testudineus
ENSMALG00000012611	cpsf4	100	79.259	ENSACAG00000012941	CPSF4	89	81.481	Anolis_carolinensis
ENSMALG00000012611	cpsf4	100	82.963	ENSANAG00000021360	CPSF4	100	82.963	Aotus_nancymaae
ENSMALG00000012611	cpsf4	100	92.481	ENSACLG00000010374	cpsf4	100	92.481	Astatotilapia_calliptera
ENSMALG00000012611	cpsf4	100	84.815	ENSAMXG00000031647	cpsf4	100	84.815	Astyanax_mexicanus
ENSMALG00000012611	cpsf4	100	80.524	ENSBTAG00000002090	CPSF4	100	80.524	Bos_taurus
ENSMALG00000012611	cpsf4	100	82.963	ENSCJAG00000015826	CPSF4	100	82.963	Callithrix_jacchus
ENSMALG00000012611	cpsf4	100	82.963	ENSCAFG00000015036	CPSF4	99	86.503	Canis_familiaris
ENSMALG00000012611	cpsf4	100	80.228	ENSCAFG00020014462	CPSF4	100	80.228	Canis_lupus_dingo
ENSMALG00000012611	cpsf4	100	82.593	ENSCHIG00000014313	CPSF4	100	82.593	Capra_hircus
ENSMALG00000012611	cpsf4	89	75.833	ENSTSYG00000008195	-	99	76.613	Carlito_syrichta
ENSMALG00000012611	cpsf4	100	81.648	ENSTSYG00000005712	-	100	82.397	Carlito_syrichta
ENSMALG00000012611	cpsf4	100	74.254	ENSTSYG00000014604	-	100	75.373	Carlito_syrichta
ENSMALG00000012611	cpsf4	85	82.110	ENSCAPG00000013881	CPSF4	96	77.273	Cavia_aperea
ENSMALG00000012611	cpsf4	100	81.273	ENSCPOG00000001783	CPSF4	100	82.022	Cavia_porcellus
ENSMALG00000012611	cpsf4	100	82.963	ENSCCAG00000028291	CPSF4	100	82.963	Cebus_capucinus
ENSMALG00000012611	cpsf4	100	82.963	ENSCATG00000038440	CPSF4	100	82.963	Cercocebus_atys
ENSMALG00000012611	cpsf4	100	82.963	ENSCLAG00000007050	CPSF4	100	82.593	Chinchilla_lanigera
ENSMALG00000012611	cpsf4	100	82.963	ENSCSAG00000017795	CPSF4	100	82.963	Chlorocebus_sabaeus
ENSMALG00000012611	cpsf4	85	78.341	ENSCPBG00000020869	CPSF4	100	81.106	Chrysemys_picta_bellii
ENSMALG00000012611	cpsf4	62	77.711	ENSCPBG00000010269	-	100	77.711	Chrysemys_picta_bellii
ENSMALG00000012611	cpsf4	97	57.198	ENSCING00000021080	-	97	57.088	Ciona_intestinalis
ENSMALG00000012611	cpsf4	96	54.417	ENSCSAVG00000011469	-	97	54.417	Ciona_savignyi
ENSMALG00000012611	cpsf4	100	82.963	ENSCANG00000019384	CPSF4	100	82.963	Colobus_angolensis_palliatus
ENSMALG00000012611	cpsf4	100	81.273	ENSCGRG00001024184	Cpsf4	100	82.022	Cricetulus_griseus_chok1gshd
ENSMALG00000012611	cpsf4	100	82.963	ENSCGRG00000013892	Cpsf4	100	82.963	Cricetulus_griseus_crigri
ENSMALG00000012611	cpsf4	100	90.226	ENSCSEG00000019055	cpsf4	100	90.226	Cynoglossus_semilaevis
ENSMALG00000012611	cpsf4	100	89.474	ENSCVAG00000016528	cpsf4	100	89.474	Cyprinodon_variegatus
ENSMALG00000012611	cpsf4	100	83.026	ENSDARG00000020217	cpsf4	100	83.026	Danio_rerio
ENSMALG00000012611	cpsf4	100	82.963	ENSDNOG00000006344	CPSF4	100	82.963	Dasypus_novemcinctus
ENSMALG00000012611	cpsf4	85	81.651	ENSDORG00000000742	Cpsf4	100	81.651	Dipodomys_ordii
ENSMALG00000012611	cpsf4	100	56.333	FBgn0015621	Clp	99	56.333	Drosophila_melanogaster
ENSMALG00000012611	cpsf4	70	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSMALG00000012611	cpsf4	99	63.910	ENSEBUG00000012552	cpsf4	98	63.910	Eptatretus_burgeri
ENSMALG00000012611	cpsf4	100	81.273	ENSEASG00005002487	CPSF4	100	82.022	Equus_asinus_asinus
ENSMALG00000012611	cpsf4	100	82.963	ENSECAG00000007525	CPSF4	100	82.963	Equus_caballus
ENSMALG00000012611	cpsf4	61	98.077	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSMALG00000012611	cpsf4	100	84.191	ENSELUG00000011481	cpsf4	100	84.559	Esox_lucius
ENSMALG00000012611	cpsf4	100	82.963	ENSFCAG00000015070	CPSF4	100	82.963	Felis_catus
ENSMALG00000012611	cpsf4	60	62.420	ENSFALG00000012906	-	100	62.420	Ficedula_albicollis
ENSMALG00000012611	cpsf4	100	80.150	ENSFALG00000013799	CPSF4	100	80.150	Ficedula_albicollis
ENSMALG00000012611	cpsf4	90	81.557	ENSFDAG00000014092	CPSF4	100	81.557	Fukomys_damarensis
ENSMALG00000012611	cpsf4	100	89.474	ENSFHEG00000010880	cpsf4	100	89.474	Fundulus_heteroclitus
ENSMALG00000012611	cpsf4	100	80.515	ENSGMOG00000002330	cpsf4	100	80.515	Gadus_morhua
ENSMALG00000012611	cpsf4	99	36.413	ENSGALG00000004441	-	98	36.413	Gallus_gallus
ENSMALG00000012611	cpsf4	100	80.150	ENSGALG00000004714	CPSF4	100	80.150	Gallus_gallus
ENSMALG00000012611	cpsf4	100	89.098	ENSGAFG00000010580	cpsf4	100	89.098	Gambusia_affinis
ENSMALG00000012611	cpsf4	100	83.955	ENSGACG00000007792	cpsf4	100	83.955	Gasterosteus_aculeatus
ENSMALG00000012611	cpsf4	68	74.725	ENSGAGG00000020579	-	100	74.725	Gopherus_agassizii
ENSMALG00000012611	cpsf4	100	80.741	ENSGAGG00000021835	CPSF4	100	82.963	Gopherus_agassizii
ENSMALG00000012611	cpsf4	100	82.963	ENSGGOG00000015131	CPSF4	100	82.963	Gorilla_gorilla
ENSMALG00000012611	cpsf4	100	92.481	ENSHBUG00000013699	cpsf4	100	92.481	Haplochromis_burtoni
ENSMALG00000012611	cpsf4	100	82.288	ENSHGLG00000017150	CPSF4	100	82.288	Heterocephalus_glaber_female
ENSMALG00000012611	cpsf4	67	63.842	ENSHGLG00100017302	-	85	65.217	Heterocephalus_glaber_male
ENSMALG00000012611	cpsf4	87	79.237	ENSHGLG00100009215	-	100	79.237	Heterocephalus_glaber_male
ENSMALG00000012611	cpsf4	100	86.466	ENSHCOG00000004397	cpsf4	100	86.466	Hippocampus_comes
ENSMALG00000012611	cpsf4	100	84.249	ENSIPUG00000017147	cpsf4	100	84.982	Ictalurus_punctatus
ENSMALG00000012611	cpsf4	100	82.963	ENSSTOG00000001688	CPSF4	100	82.963	Ictidomys_tridecemlineatus
ENSMALG00000012611	cpsf4	100	82.963	ENSJJAG00000019426	Cpsf4	100	82.593	Jaculus_jaculus
ENSMALG00000012611	cpsf4	100	89.474	ENSKMAG00000015642	cpsf4	100	89.474	Kryptolebias_marmoratus
ENSMALG00000012611	cpsf4	100	83.764	ENSLACG00000010938	CPSF4	100	83.764	Latimeria_chalumnae
ENSMALG00000012611	cpsf4	100	60.448	ENSLACG00000018470	-	100	60.448	Latimeria_chalumnae
ENSMALG00000012611	cpsf4	100	82.222	ENSLOCG00000004814	cpsf4	100	83.271	Lepisosteus_oculatus
ENSMALG00000012611	cpsf4	100	82.593	ENSLAFG00000000159	CPSF4	100	82.593	Loxodonta_africana
ENSMALG00000012611	cpsf4	100	82.963	ENSMFAG00000001462	CPSF4	100	82.963	Macaca_fascicularis
ENSMALG00000012611	cpsf4	100	82.963	ENSMMUG00000019191	CPSF4	100	82.963	Macaca_mulatta
ENSMALG00000012611	cpsf4	100	82.963	ENSMNEG00000032306	CPSF4	100	82.963	Macaca_nemestrina
ENSMALG00000012611	cpsf4	100	82.963	ENSMLEG00000034721	CPSF4	100	82.963	Mandrillus_leucophaeus
ENSMALG00000012611	cpsf4	100	92.857	ENSMAMG00000006244	cpsf4	100	92.857	Mastacembelus_armatus
ENSMALG00000012611	cpsf4	100	92.481	ENSMZEG00005007515	cpsf4	100	92.481	Maylandia_zebra
ENSMALG00000012611	cpsf4	87	78.112	ENSMGAG00000004235	CPSF4	100	78.112	Meleagris_gallopavo
ENSMALG00000012611	cpsf4	100	82.963	ENSMAUG00000021253	Cpsf4	100	82.963	Mesocricetus_auratus
ENSMALG00000012611	cpsf4	100	82.963	ENSMICG00000017429	CPSF4	100	82.963	Microcebus_murinus
ENSMALG00000012611	cpsf4	100	82.963	ENSMOCG00000014901	Cpsf4	100	82.963	Microtus_ochrogaster
ENSMALG00000012611	cpsf4	100	90.226	ENSMMOG00000001813	cpsf4	100	90.226	Mola_mola
ENSMALG00000012611	cpsf4	100	83.704	ENSMODG00000001367	CPSF4	100	83.704	Monodelphis_domestica
ENSMALG00000012611	cpsf4	100	82.963	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.963	Mus_caroli
ENSMALG00000012611	cpsf4	100	82.963	ENSMUSG00000029625	Cpsf4	100	82.963	Mus_musculus
ENSMALG00000012611	cpsf4	100	82.963	MGP_PahariEiJ_G0024581	Cpsf4	100	82.963	Mus_pahari
ENSMALG00000012611	cpsf4	100	82.963	MGP_SPRETEiJ_G0029013	Cpsf4	100	82.963	Mus_spretus
ENSMALG00000012611	cpsf4	100	82.963	ENSMPUG00000016508	CPSF4	100	82.963	Mustela_putorius_furo
ENSMALG00000012611	cpsf4	87	78.970	ENSMLUG00000010980	CPSF4	100	78.970	Myotis_lucifugus
ENSMALG00000012611	cpsf4	100	82.593	ENSNGAG00000001567	Cpsf4	100	82.593	Nannospalax_galili
ENSMALG00000012611	cpsf4	91	91.736	ENSNBRG00000003943	cpsf4	98	91.736	Neolamprologus_brichardi
ENSMALG00000012611	cpsf4	100	81.648	ENSNLEG00000011074	CPSF4	100	81.648	Nomascus_leucogenys
ENSMALG00000012611	cpsf4	100	83.704	ENSMEUG00000006955	CPSF4	100	83.704	Notamacropus_eugenii
ENSMALG00000012611	cpsf4	100	82.593	ENSOPRG00000013663	CPSF4	100	82.222	Ochotona_princeps
ENSMALG00000012611	cpsf4	100	82.963	ENSODEG00000011181	-	100	82.963	Octodon_degus
ENSMALG00000012611	cpsf4	100	65.441	ENSODEG00000009779	-	100	65.441	Octodon_degus
ENSMALG00000012611	cpsf4	98	72.581	ENSODEG00000018283	-	91	72.177	Octodon_degus
ENSMALG00000012611	cpsf4	100	92.481	ENSONIG00000008495	cpsf4	100	92.481	Oreochromis_niloticus
ENSMALG00000012611	cpsf4	87	83.051	ENSOANG00000007729	CPSF4	100	83.051	Ornithorhynchus_anatinus
ENSMALG00000012611	cpsf4	100	52.330	ENSOANG00000009568	-	100	52.330	Ornithorhynchus_anatinus
ENSMALG00000012611	cpsf4	100	82.593	ENSOCUG00000002437	CPSF4	70	82.222	Oryctolagus_cuniculus
ENSMALG00000012611	cpsf4	100	90.602	ENSORLG00000022798	cpsf4	100	90.602	Oryzias_latipes
ENSMALG00000012611	cpsf4	100	90.602	ENSORLG00020008548	cpsf4	100	90.602	Oryzias_latipes_hni
ENSMALG00000012611	cpsf4	100	90.226	ENSORLG00015019575	cpsf4	100	90.226	Oryzias_latipes_hsok
ENSMALG00000012611	cpsf4	100	89.474	ENSOMEG00000005176	cpsf4	100	89.474	Oryzias_melastigma
ENSMALG00000012611	cpsf4	100	82.963	ENSOGAG00000010884	CPSF4	100	82.963	Otolemur_garnettii
ENSMALG00000012611	cpsf4	100	72.628	ENSOARG00000018668	CPSF4	100	72.628	Ovis_aries
ENSMALG00000012611	cpsf4	100	82.593	ENSPPAG00000043355	CPSF4	100	82.593	Pan_paniscus
ENSMALG00000012611	cpsf4	100	82.963	ENSPPRG00000003134	CPSF4	100	82.963	Panthera_pardus
ENSMALG00000012611	cpsf4	90	82.305	ENSPTIG00000005604	CPSF4	90	82.305	Panthera_tigris_altaica
ENSMALG00000012611	cpsf4	100	82.593	ENSPTRG00000019453	CPSF4	100	82.593	Pan_troglodytes
ENSMALG00000012611	cpsf4	100	82.963	ENSPANG00000023123	CPSF4	100	82.963	Papio_anubis
ENSMALG00000012611	cpsf4	100	82.482	ENSPKIG00000014278	cpsf4	100	82.482	Paramormyrops_kingsleyae
ENSMALG00000012611	cpsf4	85	57.277	ENSPSIG00000018198	-	100	57.209	Pelodiscus_sinensis
ENSMALG00000012611	cpsf4	85	77.880	ENSPSIG00000011229	CPSF4	100	80.645	Pelodiscus_sinensis
ENSMALG00000012611	cpsf4	100	79.845	ENSPMGG00000017735	cpsf4	100	79.845	Periophthalmus_magnuspinnatus
ENSMALG00000012611	cpsf4	100	82.963	ENSPEMG00000004508	Cpsf4	100	82.963	Peromyscus_maniculatus_bairdii
ENSMALG00000012611	cpsf4	100	83.704	ENSPCIG00000024776	CPSF4	100	83.704	Phascolarctos_cinereus
ENSMALG00000012611	cpsf4	100	89.098	ENSPFOG00000014912	cpsf4	100	89.098	Poecilia_formosa
ENSMALG00000012611	cpsf4	100	81.955	ENSPLAG00000009599	cpsf4	100	81.955	Poecilia_latipinna
ENSMALG00000012611	cpsf4	100	89.098	ENSPMEG00000009790	cpsf4	100	89.098	Poecilia_mexicana
ENSMALG00000012611	cpsf4	100	88.346	ENSPREG00000018166	cpsf4	100	88.346	Poecilia_reticulata
ENSMALG00000012611	cpsf4	87	80.851	ENSPPYG00000017378	CPSF4	100	80.851	Pongo_abelii
ENSMALG00000012611	cpsf4	100	82.593	ENSPCAG00000001892	CPSF4	100	82.593	Procavia_capensis
ENSMALG00000012611	cpsf4	100	82.963	ENSPCOG00000012771	CPSF4	100	82.963	Propithecus_coquereli
ENSMALG00000012611	cpsf4	100	77.778	ENSPVAG00000007531	CPSF4	100	77.778	Pteropus_vampyrus
ENSMALG00000012611	cpsf4	100	92.481	ENSPNYG00000018559	cpsf4	100	92.481	Pundamilia_nyererei
ENSMALG00000012611	cpsf4	100	84.815	ENSPNAG00000003736	cpsf4	100	84.815	Pygocentrus_nattereri
ENSMALG00000012611	cpsf4	100	80.899	ENSRNOG00000000985	Cpsf4	100	80.899	Rattus_norvegicus
ENSMALG00000012611	cpsf4	87	81.702	ENSRBIG00000033886	CPSF4	100	81.702	Rhinopithecus_bieti
ENSMALG00000012611	cpsf4	100	81.273	ENSRROG00000040431	CPSF4	100	81.273	Rhinopithecus_roxellana
ENSMALG00000012611	cpsf4	100	82.963	ENSSBOG00000020493	CPSF4	100	82.963	Saimiri_boliviensis_boliviensis
ENSMALG00000012611	cpsf4	100	83.704	ENSSHAG00000011533	CPSF4	100	83.704	Sarcophilus_harrisii
ENSMALG00000012611	cpsf4	100	82.796	ENSSFOG00015007883	cpsf4	100	83.333	Scleropages_formosus
ENSMALG00000012611	cpsf4	100	83.459	ENSSMAG00000006374	cpsf4	100	83.459	Scophthalmus_maximus
ENSMALG00000012611	cpsf4	100	94.361	ENSSDUG00000018887	cpsf4	100	94.361	Seriola_dumerili
ENSMALG00000012611	cpsf4	100	94.361	ENSSLDG00000019078	cpsf4	100	94.361	Seriola_lalandi_dorsalis
ENSMALG00000012611	cpsf4	87	81.702	ENSSARG00000012416	CPSF4	100	81.702	Sorex_araneus
ENSMALG00000012611	cpsf4	96	58.431	ENSSPUG00000014803	-	97	58.431	Sphenodon_punctatus
ENSMALG00000012611	cpsf4	100	82.222	ENSSPUG00000003549	CPSF4	100	82.222	Sphenodon_punctatus
ENSMALG00000012611	cpsf4	100	84.586	ENSSPAG00000006174	cpsf4	100	84.586	Stegastes_partitus
ENSMALG00000012611	cpsf4	100	81.273	ENSSSCG00000026896	CPSF4	100	81.273	Sus_scrofa
ENSMALG00000012611	cpsf4	100	79.182	ENSTGUG00000007552	CPSF4	100	79.182	Taeniopygia_guttata
ENSMALG00000012611	cpsf4	100	85.714	ENSTRUG00000024220	cpsf4	100	85.714	Takifugu_rubripes
ENSMALG00000012611	cpsf4	100	86.466	ENSTNIG00000006265	cpsf4	100	87.218	Tetraodon_nigroviridis
ENSMALG00000012611	cpsf4	87	72.766	ENSTBEG00000011406	CPSF4	100	72.766	Tupaia_belangeri
ENSMALG00000012611	cpsf4	75	95.455	ENSTTRG00000003007	CPSF4	100	72.491	Tursiops_truncatus
ENSMALG00000012611	cpsf4	92	79.592	ENSUAMG00000008051	CPSF4	85	79.592	Ursus_americanus
ENSMALG00000012611	cpsf4	100	80.899	ENSUMAG00000009474	CPSF4	100	80.899	Ursus_maritimus
ENSMALG00000012611	cpsf4	100	81.273	ENSVVUG00000008824	CPSF4	100	81.273	Vulpes_vulpes
ENSMALG00000012611	cpsf4	99	57.836	ENSXETG00000004641	cpsf4l	99	57.836	Xenopus_tropicalis
ENSMALG00000012611	cpsf4	100	77.419	ENSXETG00000009892	cpsf4	100	77.419	Xenopus_tropicalis
ENSMALG00000012611	cpsf4	100	88.722	ENSXCOG00000016040	cpsf4	100	88.722	Xiphophorus_couchianus
ENSMALG00000012611	cpsf4	100	89.098	ENSXMAG00000024670	cpsf4	100	89.098	Xiphophorus_maculatus