EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000013817 (Gene tree)
Gene ID: 109958632
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 10368 bases
Position: chrKV884722.1:5299173-5309540
Accession: 109958632
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000019853	DEAD	PF00270.29	5.5e-41	1	1
ENSMALP00000019834	DEAD	PF00270.29	6.5e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000020224	-	6328	XM_020597435	ENSMALP00000019834	489 (aa)	XP_020453091	UPI0009B3E305
ENSMALT00000020242	-	1365	-	ENSMALP00000019853	454 (aa)	-	-

Gene Model

Click here to download ENSMALG00000013817's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000013817's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000013817	-	77	36.316	ENSMALG00000002697	DDX39A	89	36.316
ENSMALG00000013817	-	70	30.484	ENSMALG00000022550	DDX5	64	30.484
ENSMALG00000013817	-	72	32.500	ENSMALG00000002485	si:dkey-156n14.5	57	32.258
ENSMALG00000013817	-	59	36.986	ENSMALG00000000146	-	93	36.986
ENSMALG00000013817	-	75	32.620	ENSMALG00000018053	ddx49	79	32.620
ENSMALG00000013817	-	75	39.516	ENSMALG00000007033	eif4a2	90	39.516
ENSMALG00000013817	-	71	36.264	ENSMALG00000021660	ddx19	73	36.264
ENSMALG00000013817	-	71	34.247	ENSMALG00000002128	zgc:193690	74	34.247
ENSMALG00000013817	-	72	30.556	ENSMALG00000020942	ddx27	51	30.556
ENSMALG00000013817	-	75	32.095	ENSMALG00000014185	ddx59	59	32.095
ENSMALG00000013817	-	96	81.364	ENSMALG00000013776	ddx61	95	81.364
ENSMALG00000013817	-	74	31.592	ENSMALG00000022366	ddx23	50	31.592
ENSMALG00000013817	-	57	31.618	ENSMALG00000016910	ddx56	74	31.618
ENSMALG00000013817	-	73	30.000	ENSMALG00000020239	-	58	30.000
ENSMALG00000013817	-	65	30.699	ENSMALG00000008644	ddx18	51	30.699
ENSMALG00000013817	-	97	78.306	ENSMALG00000009308	ddx6	99	78.306
ENSMALG00000013817	-	71	32.768	ENSMALG00000020673	ddx43	52	32.768
ENSMALG00000013817	-	77	36.508	ENSMALG00000016324	eif4a3	92	36.508
ENSMALG00000013817	-	69	45.098	ENSMALG00000016409	ddx1	52	45.098
ENSMALG00000013817	-	77	32.292	ENSMALG00000002420	ddx47	79	32.292
ENSMALG00000013817	-	81	35.250	ENSMALG00000022576	ddx39aa	93	35.516
ENSMALG00000013817	-	76	30.370	ENSMALG00000016484	-	64	30.370
ENSMALG00000013817	-	67	32.743	ENSMALG00000001286	-	51	32.743

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000013817	-	99	85.041	ENSAPOG00000014829	ddx61	99	85.041	Acanthochromis_polyacanthus
ENSMALG00000013817	-	77	96.267	ENSAPOG00000023627	-	95	96.267	Acanthochromis_polyacanthus
ENSMALG00000013817	-	96	95.183	ENSACIG00000018355	-	96	95.183	Amphilophus_citrinellus
ENSMALG00000013817	-	100	94.683	ENSAOCG00000006269	-	100	94.683	Amphiprion_ocellaris
ENSMALG00000013817	-	99	86.066	ENSAOCG00000007627	ddx61	99	86.066	Amphiprion_ocellaris
ENSMALG00000013817	-	100	94.683	ENSAPEG00000020642	-	100	94.683	Amphiprion_percula
ENSMALG00000013817	-	100	94.683	ENSAPEG00000021368	-	100	94.683	Amphiprion_percula
ENSMALG00000013817	-	99	86.066	ENSAPEG00000007293	ddx61	99	86.066	Amphiprion_percula
ENSMALG00000013817	-	100	94.888	ENSATEG00000005424	-	100	94.888	Anabas_testudineus
ENSMALG00000013817	-	97	87.158	ENSATEG00000011302	ddx61	99	86.164	Anabas_testudineus
ENSMALG00000013817	-	98	86.639	ENSACLG00000027620	ddx61	100	86.639	Astatotilapia_calliptera
ENSMALG00000013817	-	100	94.070	ENSACLG00000003260	-	100	94.070	Astatotilapia_calliptera
ENSMALG00000013817	-	98	88.430	ENSAMXG00000033980	-	98	88.430	Astyanax_mexicanus
ENSMALG00000013817	-	97	88.347	ENSAMXG00000032542	ddx61	99	87.552	Astyanax_mexicanus
ENSMALG00000013817	-	100	92.638	ENSCSEG00000009893	-	100	92.638	Cynoglossus_semilaevis
ENSMALG00000013817	-	100	90.184	ENSCVAG00000011006	-	100	90.184	Cyprinodon_variegatus
ENSMALG00000013817	-	99	86.335	ENSDARG00000018425	ddx61	99	86.335	Danio_rerio
ENSMALG00000013817	-	98	87.759	ENSELUG00000020545	ddx61	99	87.759	Esox_lucius
ENSMALG00000013817	-	99	88.571	ENSELUG00000022538	-	99	88.571	Esox_lucius
ENSMALG00000013817	-	100	90.798	ENSFHEG00000015487	-	100	90.798	Fundulus_heteroclitus
ENSMALG00000013817	-	71	85.321	ENSGMOG00000003561	-	100	85.714	Gadus_morhua
ENSMALG00000013817	-	96	88.025	ENSGMOG00000013762	ddx61	99	87.683	Gadus_morhua
ENSMALG00000013817	-	100	91.020	ENSGAFG00000015865	-	100	91.020	Gambusia_affinis
ENSMALG00000013817	-	99	93.168	ENSGACG00000002413	-	100	93.168	Gasterosteus_aculeatus
ENSMALG00000013817	-	97	84.979	ENSGACG00000003401	ddx61	99	84.979	Gasterosteus_aculeatus
ENSMALG00000013817	-	98	86.848	ENSHBUG00000017832	ddx61	100	86.848	Haplochromis_burtoni
ENSMALG00000013817	-	100	94.070	ENSHBUG00000017033	-	100	94.070	Haplochromis_burtoni
ENSMALG00000013817	-	97	84.746	ENSHCOG00000008184	ddx61	97	84.746	Hippocampus_comes
ENSMALG00000013817	-	100	89.366	ENSHCOG00000012238	-	100	89.366	Hippocampus_comes
ENSMALG00000013817	-	96	86.994	ENSIPUG00000012823	DDX6	99	85.863	Ictalurus_punctatus
ENSMALG00000013817	-	96	88.034	ENSIPUG00000008367	-	100	86.100	Ictalurus_punctatus
ENSMALG00000013817	-	100	93.661	ENSKMAG00000007213	-	100	93.661	Kryptolebias_marmoratus
ENSMALG00000013817	-	100	92.742	ENSLBEG00000016890	-	100	92.742	Labrus_bergylta
ENSMALG00000013817	-	97	87.131	ENSLBEG00000001740	ddx61	98	87.131	Labrus_bergylta
ENSMALG00000013817	-	98	83.437	ENSLACG00000015214	ddx61	100	83.437	Latimeria_chalumnae
ENSMALG00000013817	-	99	48.765	ENSLOCG00000004352	ddx61	98	49.383	Lepisosteus_oculatus
ENSMALG00000013817	-	100	95.714	ENSMAMG00000005559	-	100	95.714	Mastacembelus_armatus
ENSMALG00000013817	-	98	86.515	ENSMAMG00000005321	ddx61	99	86.515	Mastacembelus_armatus
ENSMALG00000013817	-	100	94.070	ENSMZEG00005026268	-	100	94.070	Maylandia_zebra
ENSMALG00000013817	-	98	86.848	ENSMZEG00005003556	ddx61	100	86.848	Maylandia_zebra
ENSMALG00000013817	-	96	85.532	ENSMMOG00000007415	ddx61	97	85.532	Mola_mola
ENSMALG00000013817	-	100	84.254	ENSMMOG00000013694	-	100	84.254	Mola_mola
ENSMALG00000013817	-	72	76.487	ENSMMOG00000008825	-	92	76.487	Mola_mola
ENSMALG00000013817	-	96	86.927	ENSNBRG00000015800	ddx61	98	86.927	Neolamprologus_brichardi
ENSMALG00000013817	-	96	94.954	ENSNBRG00000015075	-	96	94.954	Neolamprologus_brichardi
ENSMALG00000013817	-	98	87.029	ENSONIG00000011418	ddx61	99	87.029	Oreochromis_niloticus
ENSMALG00000013817	-	100	94.274	ENSONIG00000013748	-	100	94.274	Oreochromis_niloticus
ENSMALG00000013817	-	100	92.229	ENSORLG00000009178	-	100	92.229	Oryzias_latipes
ENSMALG00000013817	-	100	92.434	ENSORLG00020015515	-	100	92.434	Oryzias_latipes_hni
ENSMALG00000013817	-	100	92.229	ENSORLG00015006764	-	100	92.229	Oryzias_latipes_hsok
ENSMALG00000013817	-	97	84.534	ENSOMEG00000022326	-	99	84.534	Oryzias_melastigma
ENSMALG00000013817	-	97	89.706	ENSPKIG00000024264	ddx61	99	87.935	Paramormyrops_kingsleyae
ENSMALG00000013817	-	96	90.433	ENSPMGG00000013355	-	97	90.433	Periophthalmus_magnuspinnatus
ENSMALG00000013817	-	100	91.616	ENSPFOG00000005750	-	100	91.616	Poecilia_formosa
ENSMALG00000013817	-	100	91.616	ENSPLAG00000000403	-	100	91.616	Poecilia_latipinna
ENSMALG00000013817	-	100	91.242	ENSPMEG00000023737	-	100	91.242	Poecilia_mexicana
ENSMALG00000013817	-	100	94.070	ENSPNYG00000003986	-	100	94.070	Pundamilia_nyererei
ENSMALG00000013817	-	98	80.620	ENSPNYG00000015045	ddx61	100	80.620	Pundamilia_nyererei
ENSMALG00000013817	-	98	86.804	ENSPNAG00000024072	ddx61	99	86.804	Pygocentrus_nattereri
ENSMALG00000013817	-	99	88.595	ENSPNAG00000008742	-	100	88.595	Pygocentrus_nattereri
ENSMALG00000013817	-	96	89.831	ENSSFOG00015021404	ddx61	99	87.755	Scleropages_formosus
ENSMALG00000013817	-	96	86.780	ENSSMAG00000006591	ddx61	97	86.441	Scophthalmus_maximus
ENSMALG00000013817	-	100	93.047	ENSSMAG00000001793	-	100	93.047	Scophthalmus_maximus
ENSMALG00000013817	-	96	87.660	ENSSDUG00000009713	ddx61	99	86.100	Seriola_dumerili
ENSMALG00000013817	-	100	95.714	ENSSDUG00000007530	-	100	95.714	Seriola_dumerili
ENSMALG00000013817	-	100	95.714	ENSSLDG00000007608	-	100	95.714	Seriola_lalandi_dorsalis
ENSMALG00000013817	-	96	87.660	ENSSLDG00000000132	ddx61	99	86.100	Seriola_lalandi_dorsalis
ENSMALG00000013817	-	96	88.913	ENSSPAG00000001578	ddx61	99	87.318	Stegastes_partitus
ENSMALG00000013817	-	100	96.115	ENSSPAG00000013878	-	100	96.115	Stegastes_partitus
ENSMALG00000013817	-	99	89.754	ENSTRUG00000012432	-	99	89.754	Takifugu_rubripes
ENSMALG00000013817	-	98	90.833	ENSTNIG00000003560	-	100	90.833	Tetraodon_nigroviridis
ENSMALG00000013817	-	100	82.041	ENSXCOG00000001406	-	100	82.041	Xiphophorus_couchianus
ENSMALG00000013817	-	100	91.429	ENSXMAG00000016090	-	100	91.429	Xiphophorus_maculatus