EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000016106 (Gene tree)
Gene ID: 109957728
Gene Symbol: rc3h1b
Alias: si:dkey-60b12.1
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 14754 bases
Position: chrKV884716.1:1015128-1029881
Accession: 109957728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000023752	zf-CCCH	PF00642.24	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000024178	-	3033	-	ENSMALP00000023727	1010 (aa)	-	-
ENSMALT00000024203	-	1449	-	ENSMALP00000023752	482 (aa)	-	-
ENSMALT00000024157	-	3177	-	ENSMALP00000023706	1058 (aa)	-	-
ENSMALT00000024045	-	3426	XM_020595858	ENSMALP00000023596	1141 (aa)	XP_020451514	-
ENSMALT00000024076	-	3378	-	ENSMALP00000023627	1125 (aa)	-	-
ENSMALT00000024116	-	3261	-	ENSMALP00000023666	1086 (aa)	-	-

Gene Model

Click here to download ENSMALG00000016106's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000016106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000016106	rc3h1b	94	97.143	ENSMALG00000016581	-	99	97.143
ENSMALG00000016106	rc3h1b	90	78.005	ENSMALG00000017885	rc3h2	92	78.005

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000016106	rc3h1b	91	92.063	ENSCAFG00020017112	RC3H1	100	92.063	Canis_lupus_dingo
ENSMALG00000016106	rc3h1b	95	92.144	ENSHCOG00000009753	rc3h1b	98	92.144	Hippocampus_comes
ENSMALG00000016106	rc3h1b	95	88.985	ENSLACG00000016186	RC3H1	50	88.985	Latimeria_chalumnae
ENSMALG00000016106	rc3h1b	91	98.420	ENSPMGG00000015037	rc3h1b	90	98.420	Periophthalmus_magnuspinnatus
ENSMALG00000016106	rc3h1b	94	89.625	ENSPCIG00000002058	RC3H1	97	89.625	Phascolarctos_cinereus
ENSMALG00000016106	rc3h1b	91	92.955	ENSPNAG00000023439	rc3h1a	96	92.744	Pygocentrus_nattereri
ENSMALG00000016106	rc3h1b	91	95.928	ENSPNAG00000017240	rc3h1b	94	95.928	Pygocentrus_nattereri
ENSMALG00000016106	rc3h1b	91	92.466	ENSVVUG00000014201	RC3H1	93	90.828	Vulpes_vulpes