EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMALG00000016416 (Gene tree)
Gene ID
109974481
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Monopterus_albus
Status
putative
Strand
Minus strand
Length
10441 bases
Position
chrKV885022.1:461701-472141
Accession
109974481
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMALP00000023567CPSF73-100_CPF11718.88.7e-5311
ENSMALP00000023597CPSF73-100_CPF11718.82.9e-4811
ENSMALP00000023597Beta-CaspPF10996.87.1e-3411
ENSMALP00000023567Beta-CaspPF10996.89.2e-3411
ENSMALP00000023567Lactamase_BPF00753.271.9e-1811
ENSMALP00000023597Lactamase_BPF00753.274.8e-0811
ENSMALP00000023597RMMBLPF07521.121.6e-2111
ENSMALP00000023567RMMBLPF07521.121.8e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMALT00000024016-5824XM_020624683ENSMALP00000023567686 (aa)XP_020480339UPI0009B3276A
ENSMALT00000024046-1887-ENSMALP00000023597628 (aa)--
Gene Model
Click here to download ENSMALG00000016416's gene model file
Pathways
Pathway IDPathway NameSource
malb03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000016416's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMALG00000016416cpsf39684.868ENSMALG00000011474CPSF39984.882
ENSMALG00000016416cpsf36838.365ENSMALG00000002210ints117938.365
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMALG00000016416cpsf39986.050ENSG00000119203CPSF310098.529Homo_sapiens
ENSMALG00000016416cpsf37496.267ENSAPOG00000012241CPSF39196.267Acanthochromis_polyacanthus
ENSMALG00000016416cpsf310095.627ENSAPOG00000022087cpsf310095.627Acanthochromis_polyacanthus
ENSMALG00000016416cpsf39986.050ENSAMEG00000008493CPSF39986.050Ailuropoda_melanoleuca
ENSMALG00000016416cpsf310091.772ENSACIG00000009846cpsf310091.772Amphilophus_citrinellus
ENSMALG00000016416cpsf39986.478ENSACIG00000023663CPSF39986.478Amphilophus_citrinellus
ENSMALG00000016416cpsf310095.481ENSAOCG00000022056cpsf310095.481Amphiprion_ocellaris
ENSMALG00000016416cpsf310088.551ENSAOCG00000010077CPSF310088.551Amphiprion_ocellaris
ENSMALG00000016416cpsf310095.481ENSAPEG00000019526cpsf310095.481Amphiprion_percula
ENSMALG00000016416cpsf310088.551ENSAPEG00000021167CPSF310088.551Amphiprion_percula
ENSMALG00000016416cpsf39984.325ENSATEG00000014525CPSF39984.325Anabas_testudineus
ENSMALG00000016416cpsf39996.058ENSATEG00000003959cpsf39996.058Anabas_testudineus
ENSMALG00000016416cpsf39785.373ENSAPLG00000006941CPSF39885.373Anas_platyrhynchos
ENSMALG00000016416cpsf39981.558ENSACAG00000001759CPSF39983.438Anolis_carolinensis
ENSMALG00000016416cpsf39980.764ENSANAG00000031254CPSF39981.381Aotus_nancymaae
ENSMALG00000016416cpsf39986.299ENSACLG00000018846CPSF39987.122Astatotilapia_calliptera
ENSMALG00000016416cpsf310092.197ENSACLG00000014484cpsf39994.864Astatotilapia_calliptera
ENSMALG00000016416cpsf39987.355ENSAMXG00000004786cpsf39987.355Astyanax_mexicanus
ENSMALG00000016416cpsf39986.050ENSBTAG00000019735CPSF39986.050Bos_taurus
ENSMALG00000016416cpsf38659.143WBGene00013460cpsf-38659.143Caenorhabditis_elegans
ENSMALG00000016416cpsf39985.903ENSCJAG00000006276CPSF39985.903Callithrix_jacchus
ENSMALG00000016416cpsf39986.050ENSCAFG00000003375CPSF39586.050Canis_familiaris
ENSMALG00000016416cpsf39088.835ENSCAFG00020026799CPSF39988.835Canis_lupus_dingo
ENSMALG00000016416cpsf39986.050ENSCHIG00000013973CPSF39986.050Capra_hircus
ENSMALG00000016416cpsf39986.050ENSTSYG00000002967CPSF39986.050Carlito_syrichta
ENSMALG00000016416cpsf39983.758ENSCAPG00000013851CPSF39986.165Cavia_aperea
ENSMALG00000016416cpsf39986.050ENSCPOG00000011299CPSF39986.050Cavia_porcellus
ENSMALG00000016416cpsf39985.903ENSCCAG00000036730CPSF39986.036Cebus_capucinus
ENSMALG00000016416cpsf39984.288ENSCATG00000014770CPSF39991.897Cercocebus_atys
ENSMALG00000016416cpsf39986.050ENSCLAG00000002727CPSF39986.050Chinchilla_lanigera
ENSMALG00000016416cpsf39978.120ENSCSAG00000007125CPSF39978.120Chlorocebus_sabaeus
ENSMALG00000016416cpsf385100.000ENSCHOG00000000180CPSF38561.687Choloepus_hoffmanni
ENSMALG00000016416cpsf39985.776ENSCPBG00000014074CPSF39985.776Chrysemys_picta_bellii
ENSMALG00000016416cpsf39868.182ENSCING00000007214-9768.182Ciona_intestinalis
ENSMALG00000016416cpsf39976.531ENSCANG00000034435CPSF39976.531Colobus_angolensis_palliatus
ENSMALG00000016416cpsf39985.903ENSCGRG00001013134Cpsf39985.903Cricetulus_griseus_chok1gshd
ENSMALG00000016416cpsf39985.903ENSCGRG00000018319Cpsf39985.903Cricetulus_griseus_crigri
ENSMALG00000016416cpsf310087.265ENSCSEG00000002021CPSF310087.635Cynoglossus_semilaevis
ENSMALG00000016416cpsf35080.064ENSCVAG00000022039-9481.905Cyprinodon_variegatus
ENSMALG00000016416cpsf39988.517ENSCVAG00000015067CPSF39988.517Cyprinodon_variegatus
ENSMALG00000016416cpsf310087.536ENSDARG00000027649cpsf310087.536Danio_rerio
ENSMALG00000016416cpsf39985.191ENSDNOG00000008940CPSF39585.191Dasypus_novemcinctus
ENSMALG00000016416cpsf39587.231ENSDORG00000014263Cpsf39987.231Dipodomys_ordii
ENSMALG00000016416cpsf39967.305FBgn0261065Cpsf739967.305Drosophila_melanogaster
ENSMALG00000016416cpsf39575.538ENSETEG00000003893CPSF39975.538Echinops_telfairi
ENSMALG00000016416cpsf39975.565ENSEBUG00000009018cpsf39975.565Eptatretus_burgeri
ENSMALG00000016416cpsf39986.050ENSEASG00005003970CPSF39986.050Equus_asinus_asinus
ENSMALG00000016416cpsf39986.050ENSECAG00000019911CPSF39691.414Equus_caballus
ENSMALG00000016416cpsf39971.554ENSEEUG00000015422CPSF39971.554Erinaceus_europaeus
ENSMALG00000016416cpsf39990.116ENSELUG00000013775cpsf39990.116Esox_lucius
ENSMALG00000016416cpsf39986.050ENSFCAG00000007852CPSF39986.050Felis_catus
ENSMALG00000016416cpsf39982.698ENSFALG00000006572CPSF310085.471Ficedula_albicollis
ENSMALG00000016416cpsf39985.463ENSFDAG00000006317CPSF39985.463Fukomys_damarensis
ENSMALG00000016416cpsf310092.420ENSFHEG00000014774cpsf310092.420Fundulus_heteroclitus
ENSMALG00000016416cpsf36366.748ENSFHEG00000012186CPSF39968.873Fundulus_heteroclitus
ENSMALG00000016416cpsf310090.131ENSGMOG00000003157cpsf310090.131Gadus_morhua
ENSMALG00000016416cpsf39985.486ENSGALG00000016424CPSF39985.486Gallus_gallus
ENSMALG00000016416cpsf310089.889ENSGAFG00000019449cpsf310089.889Gambusia_affinis
ENSMALG00000016416cpsf310088.696ENSGAFG00000008016CPSF310088.696Gambusia_affinis
ENSMALG00000016416cpsf37380.086ENSGAGG00000025583CPSF39381.585Gopherus_agassizii
ENSMALG00000016416cpsf39983.908ENSGGOG00000001757CPSF39196.574Gorilla_gorilla
ENSMALG00000016416cpsf310094.606ENSHBUG00000001188cpsf310094.606Haplochromis_burtoni
ENSMALG00000016416cpsf36381.592ENSHBUG00000014332CPSF310081.592Haplochromis_burtoni
ENSMALG00000016416cpsf39985.609ENSHGLG00000000666CPSF39985.609Heterocephalus_glaber_female
ENSMALG00000016416cpsf39985.609ENSHGLG00100007765CPSF39985.609Heterocephalus_glaber_male
ENSMALG00000016416cpsf39991.667ENSHCOG00000007251cpsf39991.667Hippocampus_comes
ENSMALG00000016416cpsf39987.064ENSHCOG00000015957CPSF39987.064Hippocampus_comes
ENSMALG00000016416cpsf39988.081ENSIPUG00000023488cpsf39988.081Ictalurus_punctatus
ENSMALG00000016416cpsf39985.756ENSSTOG00000004476CPSF39985.756Ictidomys_tridecemlineatus
ENSMALG00000016416cpsf39985.505ENSJJAG00000023415Cpsf39985.505Jaculus_jaculus
ENSMALG00000016416cpsf310093.003ENSKMAG00000002806cpsf310093.003Kryptolebias_marmoratus
ENSMALG00000016416cpsf39987.791ENSKMAG00000007317CPSF39987.791Kryptolebias_marmoratus
ENSMALG00000016416cpsf35988.587ENSLBEG00000015018-9989.516Labrus_bergylta
ENSMALG00000016416cpsf39986.443ENSLBEG00000020569cpsf39686.443Labrus_bergylta
ENSMALG00000016416cpsf39689.041ENSLBEG00000013492CPSF39989.041Labrus_bergylta
ENSMALG00000016416cpsf39979.826ENSLACG00000008308CPSF39979.826Latimeria_chalumnae
ENSMALG00000016416cpsf310088.312ENSLOCG00000016823cpsf310088.312Lepisosteus_oculatus
ENSMALG00000016416cpsf39885.103ENSLAFG00000009467CPSF39985.103Loxodonta_africana
ENSMALG00000016416cpsf39985.903ENSMFAG00000001339CPSF39593.568Macaca_fascicularis
ENSMALG00000016416cpsf39983.280ENSMMUG00000018038CPSF39293.568Macaca_mulatta
ENSMALG00000016416cpsf39096.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSMALG00000016416cpsf39986.050ENSMLEG00000026825CPSF39296.567Mandrillus_leucophaeus
ENSMALG00000016416cpsf39986.984ENSMAMG00000008835CPSF39986.984Mastacembelus_armatus
ENSMALG00000016416cpsf310095.627ENSMAMG00000003076cpsf310095.627Mastacembelus_armatus
ENSMALG00000016416cpsf310094.606ENSMZEG00005014358cpsf310094.606Maylandia_zebra
ENSMALG00000016416cpsf39988.808ENSMZEG00005006258CPSF39988.808Maylandia_zebra
ENSMALG00000016416cpsf39785.757ENSMGAG00000013995CPSF310085.757Meleagris_gallopavo
ENSMALG00000016416cpsf35875.936ENSMAUG00000000166Cpsf39976.738Mesocricetus_auratus
ENSMALG00000016416cpsf39981.113ENSMICG00000002363CPSF39981.113Microcebus_murinus
ENSMALG00000016416cpsf39982.845ENSMOCG00000020067Cpsf39982.845Microtus_ochrogaster
ENSMALG00000016416cpsf39986.914ENSMMOG00000018212CPSF39887.500Mola_mola
ENSMALG00000016416cpsf37878.014ENSMMOG00000011923CPSF38578.014Mola_mola
ENSMALG00000016416cpsf39984.302ENSMODG00000014703CPSF39984.302Monodelphis_domestica
ENSMALG00000016416cpsf39986.197MGP_CAROLIEiJ_G0017640Cpsf39986.197Mus_caroli
ENSMALG00000016416cpsf39986.197ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSMALG00000016416cpsf39986.050MGP_PahariEiJ_G0029397Cpsf39986.050Mus_pahari
ENSMALG00000016416cpsf39986.197MGP_SPRETEiJ_G0018481Cpsf39986.197Mus_spretus
ENSMALG00000016416cpsf39986.050ENSMPUG00000013213CPSF39986.050Mustela_putorius_furo
ENSMALG00000016416cpsf39985.777ENSMLUG00000010636CPSF39985.777Myotis_lucifugus
ENSMALG00000016416cpsf39985.903ENSNGAG00000019836Cpsf39985.903Nannospalax_galili
ENSMALG00000016416cpsf39986.299ENSNBRG00000010525CPSF39987.122Neolamprologus_brichardi
ENSMALG00000016416cpsf310094.461ENSNBRG00000004770cpsf310094.461Neolamprologus_brichardi
ENSMALG00000016416cpsf39985.903ENSNLEG00000013359CPSF39196.574Nomascus_leucogenys
ENSMALG00000016416cpsf39955.507ENSMEUG00000013117-9955.653Notamacropus_eugenii
ENSMALG00000016416cpsf39977.680ENSOPRG00000008902CPSF39977.680Ochotona_princeps
ENSMALG00000016416cpsf39986.197ENSODEG00000003129CPSF39986.197Octodon_degus
ENSMALG00000016416cpsf310094.606ENSONIG00000018812cpsf310094.606Oreochromis_niloticus
ENSMALG00000016416cpsf38882.206ENSOANG00000008577CPSF39983.274Ornithorhynchus_anatinus
ENSMALG00000016416cpsf39986.050ENSOCUG00000003728CPSF39986.050Oryctolagus_cuniculus
ENSMALG00000016416cpsf310092.274ENSORLG00000018854cpsf310092.274Oryzias_latipes
ENSMALG00000016416cpsf310092.128ENSORLG00020013331cpsf310092.128Oryzias_latipes_hni
ENSMALG00000016416cpsf310092.274ENSORLG00015011017cpsf310092.274Oryzias_latipes_hsok
ENSMALG00000016416cpsf310092.711ENSOMEG00000010647cpsf39692.711Oryzias_melastigma
ENSMALG00000016416cpsf39976.211ENSOGAG00000001680CPSF39976.211Otolemur_garnettii
ENSMALG00000016416cpsf39986.050ENSOARG00000015073CPSF39986.050Ovis_aries
ENSMALG00000016416cpsf39986.050ENSPPAG00000042457CPSF39196.574Pan_paniscus
ENSMALG00000016416cpsf39986.050ENSPPRG00000016790CPSF39986.197Panthera_pardus
ENSMALG00000016416cpsf39886.431ENSPTIG00000003920CPSF39986.578Panthera_tigris_altaica
ENSMALG00000016416cpsf39986.050ENSPTRG00000011638CPSF39196.574Pan_troglodytes
ENSMALG00000016416cpsf39986.050ENSPANG00000016798CPSF39593.568Papio_anubis
ENSMALG00000016416cpsf310088.406ENSPKIG00000023646cpsf310088.406Paramormyrops_kingsleyae
ENSMALG00000016416cpsf39984.773ENSPSIG00000016144CPSF310084.773Pelodiscus_sinensis
ENSMALG00000016416cpsf310087.739ENSPMGG00000006141-10087.739Periophthalmus_magnuspinnatus
ENSMALG00000016416cpsf36379.302ENSPMGG00000015311CPSF310080.741Periophthalmus_magnuspinnatus
ENSMALG00000016416cpsf39985.903ENSPEMG00000017668Cpsf39986.050Peromyscus_maniculatus_bairdii
ENSMALG00000016416cpsf37989.687ENSPMAG00000004841cpsf39989.687Petromyzon_marinus
ENSMALG00000016416cpsf39982.540ENSPCIG00000009823CPSF39886.196Phascolarctos_cinereus
ENSMALG00000016416cpsf310088.261ENSPFOG00000010418-10088.261Poecilia_formosa
ENSMALG00000016416cpsf310092.857ENSPFOG00000015922cpsf310092.857Poecilia_formosa
ENSMALG00000016416cpsf36380.098ENSPLAG00000021300-10082.222Poecilia_latipinna
ENSMALG00000016416cpsf310092.857ENSPLAG00000000882cpsf310092.857Poecilia_latipinna
ENSMALG00000016416cpsf310092.857ENSPMEG00000018309cpsf310092.857Poecilia_mexicana
ENSMALG00000016416cpsf310089.857ENSPREG00000014875cpsf310089.857Poecilia_reticulata
ENSMALG00000016416cpsf310082.899ENSPREG00000004482CPSF310082.899Poecilia_reticulata
ENSMALG00000016416cpsf39981.791ENSPPYG00000012666CPSF39981.791Pongo_abelii
ENSMALG00000016416cpsf38565.414ENSPCAG00000015042CPSF38965.414Procavia_capensis
ENSMALG00000016416cpsf38885.567ENSPCOG00000023016CPSF39985.567Propithecus_coquereli
ENSMALG00000016416cpsf39986.070ENSPVAG00000005324CPSF39986.070Pteropus_vampyrus
ENSMALG00000016416cpsf38892.196ENSPNYG00000021047CPSF39292.196Pundamilia_nyererei
ENSMALG00000016416cpsf310094.606ENSPNYG00000004405cpsf310094.606Pundamilia_nyererei
ENSMALG00000016416cpsf310087.681ENSPNAG00000023060cpsf310087.681Pygocentrus_nattereri
ENSMALG00000016416cpsf39986.197ENSRNOG00000052418Cpsf39986.197Rattus_norvegicus
ENSMALG00000016416cpsf39980.848ENSRBIG00000041615CPSF39981.944Rhinopithecus_bieti
ENSMALG00000016416cpsf39986.050ENSRROG00000033792CPSF39986.050Rhinopithecus_roxellana
ENSMALG00000016416cpsf38542.598YLR277CYSH18542.598Saccharomyces_cerevisiae
ENSMALG00000016416cpsf39979.430ENSSBOG00000027263CPSF39782.362Saimiri_boliviensis_boliviensis
ENSMALG00000016416cpsf39985.463ENSSHAG00000007024CPSF39985.463Sarcophilus_harrisii
ENSMALG00000016416cpsf310088.696ENSSFOG00015002108cpsf310088.696Scleropages_formosus
ENSMALG00000016416cpsf39688.432ENSSMAG00000020534CPSF39788.432Scophthalmus_maximus
ENSMALG00000016416cpsf310095.481ENSSDUG00000002828cpsf39795.481Seriola_dumerili
ENSMALG00000016416cpsf310088.406ENSSDUG00000018498CPSF310088.406Seriola_dumerili
ENSMALG00000016416cpsf310095.190ENSSLDG00000008469cpsf39795.190Seriola_lalandi_dorsalis
ENSMALG00000016416cpsf310088.406ENSSLDG00000005234CPSF310088.406Seriola_lalandi_dorsalis
ENSMALG00000016416cpsf38983.647ENSSARG00000005186CPSF38983.647Sorex_araneus
ENSMALG00000016416cpsf39684.328ENSSPUG00000015525CPSF39784.328Sphenodon_punctatus
ENSMALG00000016416cpsf310088.696ENSSPAG00000002906CPSF310088.696Stegastes_partitus
ENSMALG00000016416cpsf310095.481ENSSPAG00000018579cpsf310095.481Stegastes_partitus
ENSMALG00000016416cpsf39986.050ENSSSCG00000020799CPSF39986.050Sus_scrofa
ENSMALG00000016416cpsf39985.903ENSTGUG00000013016CPSF39985.903Taeniopygia_guttata
ENSMALG00000016416cpsf39992.555ENSTRUG00000007030cpsf39892.555Takifugu_rubripes
ENSMALG00000016416cpsf36374.000ENSTRUG00000013905CPSF39974.752Takifugu_rubripes
ENSMALG00000016416cpsf38490.385ENSTBEG00000002707CPSF38490.385Tupaia_belangeri
ENSMALG00000016416cpsf38673.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSMALG00000016416cpsf39686.364ENSUAMG00000007535CPSF39586.364Ursus_americanus
ENSMALG00000016416cpsf39983.439ENSUMAG00000003676CPSF39491.398Ursus_maritimus
ENSMALG00000016416cpsf39286.435ENSVPAG00000008041CPSF310086.435Vicugna_pacos
ENSMALG00000016416cpsf39986.050ENSVVUG00000002194CPSF39986.050Vulpes_vulpes
ENSMALG00000016416cpsf39984.493ENSXETG00000008263cpsf39984.493Xenopus_tropicalis
ENSMALG00000016416cpsf35878.610ENSXCOG00000000957-8780.914Xiphophorus_couchianus
ENSMALG00000016416cpsf310092.128ENSXCOG00000019695cpsf310092.128Xiphophorus_couchianus
ENSMALG00000016416cpsf310092.711ENSXMAG00000009784cpsf310092.711Xiphophorus_maculatus
ENSMALG00000016416cpsf310088.406ENSXMAG00000027291CPSF310088.406Xiphophorus_maculatus

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