EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000016619 (Gene tree)
Gene ID: 109973213
Gene Symbol: RNPS1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA-binding protein with serine-rich domain 1-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 9060 bases
Position: chrKV884972.1:481793-490852
Accession: 109973213
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000023844	RRM_1	PF00076.22	1.8e-17	1	1
ENSMALP00000023852	RRM_1	PF00076.22	1.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000024304	RNPS1-202	942	-	ENSMALP00000023852	313 (aa)	-	UPI0009B38556
ENSMALT00000024295	RNPS1-201	4847	XM_020622627	ENSMALP00000023844	313 (aa)	XP_020478283	UPI0009B38556

Gene Model

Click here to download ENSMALG00000016619's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000016619's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000016619	RNPS1	68	79.717	ENSACIG00000014367	-	76	80.000	Amphilophus_citrinellus
ENSMALG00000016619	RNPS1	82	62.500	ENSCATG00000042361	-	57	78.632	Cercocebus_atys
ENSMALG00000016619	RNPS1	68	80.465	ENSCVAG00000010868	RNPS1	76	77.465	Cyprinodon_variegatus
ENSMALG00000016619	RNPS1	68	79.167	ENSFHEG00000011705	RNPS1	76	76.168	Fundulus_heteroclitus
ENSMALG00000016619	RNPS1	68	79.535	ENSGAFG00000005457	RNPS1	76	76.056	Gambusia_affinis
ENSMALG00000016619	RNPS1	74	59.149	ENSSTOG00000013200	RNPS1	50	79.200	Ictidomys_tridecemlineatus
ENSMALG00000016619	RNPS1	73	75.109	ENSMAMG00000021148	-	75	70.485	Mastacembelus_armatus
ENSMALG00000016619	RNPS1	77	65.462	ENSNLEG00000009243	RNPS1	71	76.562	Nomascus_leucogenys
ENSMALG00000016619	RNPS1	53	53.293	ENSODEG00000002513	-	52	47.899	Octodon_degus
ENSMALG00000016619	RNPS1	73	75.000	ENSORLG00000008033	RNPS1	53	83.784	Oryzias_latipes
ENSMALG00000016619	RNPS1	73	67.841	ENSORLG00015011183	RNPS1	73	60.256	Oryzias_latipes_hsok
ENSMALG00000016619	RNPS1	77	62.348	ENSPPAG00000011845	RNPS1	56	72.581	Pan_paniscus
ENSMALG00000016619	RNPS1	68	80.465	ENSPFOG00000009978	RNPS1	76	76.995	Poecilia_formosa
ENSMALG00000016619	RNPS1	68	80.465	ENSPLAG00000009343	RNPS1	76	76.995	Poecilia_latipinna
ENSMALG00000016619	RNPS1	68	80.465	ENSPMEG00000008552	RNPS1	76	76.995	Poecilia_mexicana
ENSMALG00000016619	RNPS1	68	80.465	ENSPREG00000001843	RNPS1	76	76.995	Poecilia_reticulata
ENSMALG00000016619	RNPS1	71	87.838	ENSSLDG00000021341	RNPS1	77	73.659	Seriola_lalandi_dorsalis