EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000017598 (Gene tree)
Gene ID: 109962493
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 4896 bases
Position: chrKV884691.1:918516-923411
Accession: 109962493
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000025320	SMN	PF06003.12	2.7e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000025793	-	717	XM_020604261	ENSMALP00000025320	238 (aa)	XP_020459917	A0A2K9QLA2

Gene Model

Click here to download ENSMALG00000017598's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000017598's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000017598	smndc1	100	76.471	ENSG00000119953	SMNDC1	100	76.471	Homo_sapiens
ENSMALG00000017598	smndc1	100	89.496	ENSAPOG00000021772	smndc1	100	89.496	Acanthochromis_polyacanthus
ENSMALG00000017598	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSMALG00000017598	smndc1	100	91.176	ENSACIG00000004819	smndc1	100	91.176	Amphilophus_citrinellus
ENSMALG00000017598	smndc1	100	88.235	ENSAOCG00000017869	smndc1	100	88.235	Amphiprion_ocellaris
ENSMALG00000017598	smndc1	100	88.235	ENSAPEG00000007752	smndc1	100	88.235	Amphiprion_percula
ENSMALG00000017598	smndc1	100	91.597	ENSATEG00000006830	smndc1	100	91.597	Anabas_testudineus
ENSMALG00000017598	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSMALG00000017598	smndc1	100	76.471	ENSACAG00000005983	SMNDC1	100	76.471	Anolis_carolinensis
ENSMALG00000017598	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSMALG00000017598	smndc1	100	89.496	ENSACLG00000016360	smndc1	100	89.496	Astatotilapia_calliptera
ENSMALG00000017598	smndc1	100	80.252	ENSAMXG00000020310	smndc1	100	80.252	Astyanax_mexicanus
ENSMALG00000017598	smndc1	100	78.243	ENSBTAG00000000551	SMNDC1	100	78.243	Bos_taurus
ENSMALG00000017598	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSMALG00000017598	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSMALG00000017598	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSMALG00000017598	smndc1	100	78.243	ENSCHIG00000010604	SMNDC1	100	78.243	Capra_hircus
ENSMALG00000017598	smndc1	100	76.471	ENSTSYG00000026454	SMNDC1	100	76.471	Carlito_syrichta
ENSMALG00000017598	smndc1	100	62.917	ENSCAPG00000009132	SMNDC1	100	73.134	Cavia_aperea
ENSMALG00000017598	smndc1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSMALG00000017598	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSMALG00000017598	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSMALG00000017598	smndc1	100	76.471	ENSCLAG00000002838	SMNDC1	100	76.471	Chinchilla_lanigera
ENSMALG00000017598	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSMALG00000017598	smndc1	81	72.539	ENSCHOG00000002936	SMNDC1	100	72.539	Choloepus_hoffmanni
ENSMALG00000017598	smndc1	100	76.891	ENSCPBG00000012837	SMNDC1	100	76.891	Chrysemys_picta_bellii
ENSMALG00000017598	smndc1	100	61.088	ENSCANG00000036994	-	100	61.088	Colobus_angolensis_palliatus
ENSMALG00000017598	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSMALG00000017598	smndc1	100	70.588	ENSCANG00000034620	-	100	70.588	Colobus_angolensis_palliatus
ENSMALG00000017598	smndc1	100	76.891	ENSCGRG00001012973	Smndc1	100	76.891	Cricetulus_griseus_chok1gshd
ENSMALG00000017598	smndc1	100	76.891	ENSCGRG00000012396	Smndc1	100	76.891	Cricetulus_griseus_crigri
ENSMALG00000017598	smndc1	100	84.454	ENSCSEG00000015621	smndc1	100	84.454	Cynoglossus_semilaevis
ENSMALG00000017598	smndc1	100	86.555	ENSCVAG00000020432	smndc1	100	86.555	Cyprinodon_variegatus
ENSMALG00000017598	smndc1	100	83.264	ENSDARG00000056235	smndc1	100	83.264	Danio_rerio
ENSMALG00000017598	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSMALG00000017598	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSMALG00000017598	smndc1	97	41.502	FBgn0039977	CG17454	98	43.083	Drosophila_melanogaster
ENSMALG00000017598	smndc1	100	68.465	ENSEBUG00000010929	smndc1	100	69.710	Eptatretus_burgeri
ENSMALG00000017598	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSMALG00000017598	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSMALG00000017598	smndc1	83	55.051	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSMALG00000017598	smndc1	100	84.454	ENSELUG00000000227	smndc1	100	84.454	Esox_lucius
ENSMALG00000017598	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSMALG00000017598	smndc1	100	76.471	ENSFALG00000002306	SMNDC1	100	76.471	Ficedula_albicollis
ENSMALG00000017598	smndc1	100	76.471	ENSFDAG00000006468	SMNDC1	100	76.471	Fukomys_damarensis
ENSMALG00000017598	smndc1	100	88.235	ENSFHEG00000020150	smndc1	100	88.235	Fundulus_heteroclitus
ENSMALG00000017598	smndc1	100	83.613	ENSGMOG00000016585	smndc1	100	83.613	Gadus_morhua
ENSMALG00000017598	smndc1	100	76.471	ENSGALG00000008561	SMNDC1	100	76.471	Gallus_gallus
ENSMALG00000017598	smndc1	100	86.975	ENSGAFG00000011582	smndc1	100	86.975	Gambusia_affinis
ENSMALG00000017598	smndc1	100	88.655	ENSGACG00000009468	smndc1	100	88.655	Gasterosteus_aculeatus
ENSMALG00000017598	smndc1	100	76.891	ENSGAGG00000024547	SMNDC1	100	76.891	Gopherus_agassizii
ENSMALG00000017598	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSMALG00000017598	smndc1	100	89.496	ENSHBUG00000017596	smndc1	100	89.496	Haplochromis_burtoni
ENSMALG00000017598	smndc1	100	55.510	ENSHGLG00000001157	-	100	55.102	Heterocephalus_glaber_female
ENSMALG00000017598	smndc1	100	76.471	ENSHGLG00000013390	-	100	76.471	Heterocephalus_glaber_female
ENSMALG00000017598	smndc1	100	60.816	ENSHGLG00100004278	-	100	59.109	Heterocephalus_glaber_male
ENSMALG00000017598	smndc1	100	76.471	ENSHGLG00100004814	-	100	76.471	Heterocephalus_glaber_male
ENSMALG00000017598	smndc1	100	82.427	ENSHCOG00000000783	smndc1	100	82.427	Hippocampus_comes
ENSMALG00000017598	smndc1	100	84.874	ENSIPUG00000004217	smndc1	100	84.874	Ictalurus_punctatus
ENSMALG00000017598	smndc1	100	76.471	ENSSTOG00000006088	SMNDC1	100	76.471	Ictidomys_tridecemlineatus
ENSMALG00000017598	smndc1	100	76.471	ENSJJAG00000019974	Smndc1	100	76.471	Jaculus_jaculus
ENSMALG00000017598	smndc1	100	87.395	ENSKMAG00000020134	smndc1	100	87.395	Kryptolebias_marmoratus
ENSMALG00000017598	smndc1	100	87.815	ENSLBEG00000004598	smndc1	100	87.815	Labrus_bergylta
ENSMALG00000017598	smndc1	100	75.630	ENSLACG00000007784	SMNDC1	100	75.630	Latimeria_chalumnae
ENSMALG00000017598	smndc1	100	82.353	ENSLOCG00000012355	smndc1	100	82.353	Lepisosteus_oculatus
ENSMALG00000017598	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSMALG00000017598	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSMALG00000017598	smndc1	100	64.286	ENSMFAG00000038381	-	100	64.286	Macaca_fascicularis
ENSMALG00000017598	smndc1	100	64.286	ENSMMUG00000045875	-	100	64.286	Macaca_mulatta
ENSMALG00000017598	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSMALG00000017598	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSMALG00000017598	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSMALG00000017598	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSMALG00000017598	smndc1	89	88.732	ENSMAMG00000018233	smndc1	87	88.732	Mastacembelus_armatus
ENSMALG00000017598	smndc1	100	89.496	ENSMZEG00005027510	smndc1	100	89.496	Maylandia_zebra
ENSMALG00000017598	smndc1	99	67.647	ENSMGAG00000010777	SMNDC1	100	67.647	Meleagris_gallopavo
ENSMALG00000017598	smndc1	99	63.291	ENSMAUG00000005459	-	93	63.291	Mesocricetus_auratus
ENSMALG00000017598	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSMALG00000017598	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSMALG00000017598	smndc1	100	65.966	ENSMICG00000031640	-	100	65.966	Microcebus_murinus
ENSMALG00000017598	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSMALG00000017598	smndc1	100	87.815	ENSMMOG00000008856	smndc1	100	87.815	Mola_mola
ENSMALG00000017598	smndc1	100	76.471	ENSMODG00000010542	SMNDC1	100	76.471	Monodelphis_domestica
ENSMALG00000017598	smndc1	100	76.050	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.050	Mus_caroli
ENSMALG00000017598	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSMALG00000017598	smndc1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSMALG00000017598	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSMALG00000017598	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSMALG00000017598	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSMALG00000017598	smndc1	100	76.891	ENSNGAG00000006833	Smndc1	100	76.891	Nannospalax_galili
ENSMALG00000017598	smndc1	100	89.496	ENSNBRG00000017089	smndc1	100	89.496	Neolamprologus_brichardi
ENSMALG00000017598	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSMALG00000017598	smndc1	82	55.500	ENSMEUG00000010120	-	100	55.224	Notamacropus_eugenii
ENSMALG00000017598	smndc1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSMALG00000017598	smndc1	100	55.042	ENSODEG00000007594	-	100	52.941	Octodon_degus
ENSMALG00000017598	smndc1	100	89.496	ENSONIG00000000434	smndc1	100	89.496	Oreochromis_niloticus
ENSMALG00000017598	smndc1	100	76.891	ENSOANG00000001598	SMNDC1	100	76.891	Ornithorhynchus_anatinus
ENSMALG00000017598	smndc1	100	57.143	ENSOCUG00000012274	-	100	59.664	Oryctolagus_cuniculus
ENSMALG00000017598	smndc1	100	76.050	ENSOCUG00000008145	-	100	76.050	Oryctolagus_cuniculus
ENSMALG00000017598	smndc1	100	81.513	ENSORLG00000005934	smndc1	95	81.513	Oryzias_latipes
ENSMALG00000017598	smndc1	100	81.513	ENSORLG00020008796	smndc1	95	81.513	Oryzias_latipes_hni
ENSMALG00000017598	smndc1	100	81.092	ENSORLG00015013666	smndc1	100	81.092	Oryzias_latipes_hsok
ENSMALG00000017598	smndc1	100	79.832	ENSOMEG00000007590	smndc1	100	79.832	Oryzias_melastigma
ENSMALG00000017598	smndc1	100	78.243	ENSOGAG00000000571	SMNDC1	100	78.243	Otolemur_garnettii
ENSMALG00000017598	smndc1	100	78.243	ENSOARG00000009500	SMNDC1	100	78.243	Ovis_aries
ENSMALG00000017598	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSMALG00000017598	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSMALG00000017598	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSMALG00000017598	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSMALG00000017598	smndc1	100	72.269	ENSPANG00000031346	-	100	72.269	Papio_anubis
ENSMALG00000017598	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSMALG00000017598	smndc1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSMALG00000017598	smndc1	100	76.891	ENSPSIG00000012257	SMNDC1	100	76.891	Pelodiscus_sinensis
ENSMALG00000017598	smndc1	100	79.412	ENSPMGG00000015651	smndc1	100	79.412	Periophthalmus_magnuspinnatus
ENSMALG00000017598	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSMALG00000017598	smndc1	100	64.344	ENSPMAG00000007705	smndc1	100	64.344	Petromyzon_marinus
ENSMALG00000017598	smndc1	95	57.965	ENSPCIG00000009693	-	98	57.965	Phascolarctos_cinereus
ENSMALG00000017598	smndc1	100	76.471	ENSPCIG00000018419	SMNDC1	100	76.471	Phascolarctos_cinereus
ENSMALG00000017598	smndc1	100	87.815	ENSPFOG00000017113	smndc1	100	87.815	Poecilia_formosa
ENSMALG00000017598	smndc1	100	88.235	ENSPLAG00000010372	smndc1	100	88.235	Poecilia_latipinna
ENSMALG00000017598	smndc1	100	87.395	ENSPMEG00000012288	smndc1	100	87.395	Poecilia_mexicana
ENSMALG00000017598	smndc1	100	86.134	ENSPREG00000012279	smndc1	100	86.134	Poecilia_reticulata
ENSMALG00000017598	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSMALG00000017598	smndc1	81	72.021	ENSPCAG00000016183	SMNDC1	100	72.021	Procavia_capensis
ENSMALG00000017598	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSMALG00000017598	smndc1	100	60.084	ENSPVAG00000004368	SMNDC1	100	60.084	Pteropus_vampyrus
ENSMALG00000017598	smndc1	83	88.889	ENSPNYG00000024093	smndc1	86	88.889	Pundamilia_nyererei
ENSMALG00000017598	smndc1	100	80.252	ENSPNAG00000025285	smndc1	100	80.252	Pygocentrus_nattereri
ENSMALG00000017598	smndc1	100	76.050	ENSRNOG00000014833	Smndc1	100	76.050	Rattus_norvegicus
ENSMALG00000017598	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSMALG00000017598	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSMALG00000017598	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSMALG00000017598	smndc1	100	63.025	ENSRROG00000039125	-	100	63.025	Rhinopithecus_roxellana
ENSMALG00000017598	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSMALG00000017598	smndc1	100	76.471	ENSSHAG00000015189	SMNDC1	100	76.471	Sarcophilus_harrisii
ENSMALG00000017598	smndc1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSMALG00000017598	smndc1	100	91.597	ENSSMAG00000020118	smndc1	100	91.597	Scophthalmus_maximus
ENSMALG00000017598	smndc1	100	93.697	ENSSDUG00000015330	smndc1	100	93.697	Seriola_dumerili
ENSMALG00000017598	smndc1	100	93.277	ENSSLDG00000017325	smndc1	100	93.277	Seriola_lalandi_dorsalis
ENSMALG00000017598	smndc1	100	76.471	ENSSARG00000006063	SMNDC1	100	76.471	Sorex_araneus
ENSMALG00000017598	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSMALG00000017598	smndc1	100	89.496	ENSSPAG00000000338	smndc1	100	89.496	Stegastes_partitus
ENSMALG00000017598	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSMALG00000017598	smndc1	100	76.471	ENSTGUG00000010599	SMNDC1	100	76.471	Taeniopygia_guttata
ENSMALG00000017598	smndc1	100	84.034	ENSTRUG00000023281	smndc1	100	84.034	Takifugu_rubripes
ENSMALG00000017598	smndc1	100	83.193	ENSTNIG00000013331	smndc1	100	83.193	Tetraodon_nigroviridis
ENSMALG00000017598	smndc1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSMALG00000017598	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSMALG00000017598	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSMALG00000017598	smndc1	83	76.263	ENSVPAG00000003402	SMNDC1	100	76.263	Vicugna_pacos
ENSMALG00000017598	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSMALG00000017598	smndc1	60	62.676	ENSXETG00000015415	SMNDC1	100	62.676	Xenopus_tropicalis
ENSMALG00000017598	smndc1	100	87.815	ENSXCOG00000009159	smndc1	100	87.815	Xiphophorus_couchianus
ENSMALG00000017598	smndc1	100	87.815	ENSXMAG00000012755	smndc1	100	87.815	Xiphophorus_maculatus