EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Description

Ensembl ID: ENSMALG00000017904 (Gene tree)
Gene ID: 109970459
Gene Symbol: pafah1b1b
Alias: lis1a
Full Name: lissencephaly-1 homolog B
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 8451 bases
Position: chrKV884887.1:134133-142583
Accession: 109970459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000025764	eIF2A	PF08662.11	6.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000026233	-	2803	XM_020618023	ENSMALP00000025757	410 (aa)	XP_020473679	UPI0009B46787
ENSMALT00000026240	-	1185	-	ENSMALP00000025764	394 (aa)	-	-

Gene Model

Click here to download ENSMALG00000017904's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb00565	Ether lipid metabolism	KEGG
malb01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000017904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000017904	pafah1b1b	76	35.526	ENSMALG00000002309	-	98	30.723
ENSMALG00000017904	pafah1b1b	79	31.915	ENSMALG00000007013	tbl3	67	31.915
ENSMALG00000017904	pafah1b1b	74	32.911	ENSMALG00000013624	prpf4	57	32.911
ENSMALG00000017904	pafah1b1b	78	37.838	ENSMALG00000016265	wdr3	51	37.838
ENSMALG00000017904	pafah1b1b	76	31.023	ENSMALG00000005423	wdr5	90	31.023