EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000018100 (Gene tree)
Gene ID: 109966845
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 12553 bases
Position: chrKV884808.1:540403-552955
Accession: 109966845
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000026074	UPF1_Zn_bind	PF09416.10	1.5e-73	1	1
ENSMALP00000026074	ResIII	PF04851.15	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000026555	-	3318	XM_020612026	ENSMALP00000026074	1105 (aa)	XP_020467682	-

Gene Model

Click here to download ENSMALG00000018100's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03013	RNA transport	KEGG
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000018100's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000018100	-	100	91.041	ENSMALG00000000144	upf1	100	90.975

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000018100	-	100	91.297	ENSG00000005007	UPF1	100	91.297	Homo_sapiens
ENSMALG00000018100	-	100	91.892	ENSAPOG00000023773	upf1	100	91.892	Acanthochromis_polyacanthus
ENSMALG00000018100	-	100	97.647	ENSAPOG00000010916	-	100	97.647	Acanthochromis_polyacanthus
ENSMALG00000018100	-	100	90.813	ENSAMEG00000011474	UPF1	100	90.813	Ailuropoda_melanoleuca
ENSMALG00000018100	-	93	96.896	ENSACIG00000010985	-	100	96.896	Amphilophus_citrinellus
ENSMALG00000018100	-	100	91.946	ENSACIG00000019949	upf1	100	91.946	Amphilophus_citrinellus
ENSMALG00000018100	-	100	91.403	ENSAOCG00000018519	upf1	100	91.875	Amphiprion_ocellaris
ENSMALG00000018100	-	100	97.285	ENSAOCG00000006352	-	100	97.285	Amphiprion_ocellaris
ENSMALG00000018100	-	100	97.195	ENSAPEG00000006292	-	100	97.195	Amphiprion_percula
ENSMALG00000018100	-	100	91.403	ENSAPEG00000016344	upf1	100	91.875	Amphiprion_percula
ENSMALG00000018100	-	100	90.160	ENSATEG00000017867	upf1	100	91.266	Anabas_testudineus
ENSMALG00000018100	-	100	97.376	ENSATEG00000016606	-	100	97.376	Anabas_testudineus
ENSMALG00000018100	-	95	92.642	ENSAPLG00000009175	UPF1	100	92.547	Anas_platyrhynchos
ENSMALG00000018100	-	95	91.304	ENSANAG00000024107	UPF1	95	91.210	Aotus_nancymaae
ENSMALG00000018100	-	100	91.946	ENSACLG00000007181	upf1	100	91.946	Astatotilapia_calliptera
ENSMALG00000018100	-	100	96.835	ENSACLG00000022630	-	100	96.835	Astatotilapia_calliptera
ENSMALG00000018100	-	100	93.406	ENSAMXG00000042187	upf1	100	93.586	Astyanax_mexicanus
ENSMALG00000018100	-	100	90.829	ENSBTAG00000020922	UPF1	100	90.829	Bos_taurus
ENSMALG00000018100	-	97	48.587	WBGene00004880	smg-2	99	48.587	Caenorhabditis_elegans
ENSMALG00000018100	-	100	90.413	ENSCJAG00000019627	UPF1	100	90.413	Callithrix_jacchus
ENSMALG00000018100	-	100	90.589	ENSCAFG00000014578	UPF1	100	90.589	Canis_familiaris
ENSMALG00000018100	-	100	91.474	ENSCAFG00020012347	UPF1	100	91.474	Canis_lupus_dingo
ENSMALG00000018100	-	100	91.719	ENSCHIG00000011018	UPF1	100	91.719	Capra_hircus
ENSMALG00000018100	-	95	92.439	ENSTSYG00000008877	UPF1	98	92.344	Carlito_syrichta
ENSMALG00000018100	-	95	92.344	ENSCAPG00000005758	UPF1	95	92.250	Cavia_aperea
ENSMALG00000018100	-	100	91.406	ENSCPOG00000025463	UPF1	100	91.316	Cavia_porcellus
ENSMALG00000018100	-	100	91.297	ENSCCAG00000032175	UPF1	100	91.297	Cebus_capucinus
ENSMALG00000018100	-	94	92.681	ENSCATG00000040306	UPF1	98	92.600	Cercocebus_atys
ENSMALG00000018100	-	95	92.628	ENSCLAG00000004037	UPF1	99	92.533	Chinchilla_lanigera
ENSMALG00000018100	-	100	91.297	ENSCSAG00000005276	UPF1	100	91.297	Chlorocebus_sabaeus
ENSMALG00000018100	-	100	91.332	ENSCPBG00000012513	UPF1	100	91.339	Chrysemys_picta_bellii
ENSMALG00000018100	-	77	79.040	ENSCING00000021399	-	99	78.880	Ciona_intestinalis
ENSMALG00000018100	-	99	72.337	ENSCSAVG00000006533	-	99	72.679	Ciona_savignyi
ENSMALG00000018100	-	95	92.628	ENSCANG00000029819	UPF1	97	92.533	Colobus_angolensis_palliatus
ENSMALG00000018100	-	100	91.258	ENSCGRG00001021067	Upf1	100	91.258	Cricetulus_griseus_chok1gshd
ENSMALG00000018100	-	96	90.901	ENSCGRG00000013480	Upf1	99	90.808	Cricetulus_griseus_crigri
ENSMALG00000018100	-	100	86.992	ENSCSEG00000017239	upf1	100	86.757	Cynoglossus_semilaevis
ENSMALG00000018100	-	100	96.561	ENSCSEG00000016159	-	100	96.561	Cynoglossus_semilaevis
ENSMALG00000018100	-	100	95.928	ENSCVAG00000010561	upf1	100	95.928	Cyprinodon_variegatus
ENSMALG00000018100	-	100	92.773	ENSDARG00000016302	upf1	100	93.044	Danio_rerio
ENSMALG00000018100	-	95	90.066	ENSDORG00000009984	Upf1	95	89.972	Dipodomys_ordii
ENSMALG00000018100	-	84	71.353	FBgn0030354	Upf1	81	70.114	Drosophila_melanogaster
ENSMALG00000018100	-	53	87.752	ENSEBUG00000010069	upf1	96	87.752	Eptatretus_burgeri
ENSMALG00000018100	-	100	91.630	ENSEASG00005006549	UPF1	100	91.630	Equus_asinus_asinus
ENSMALG00000018100	-	100	91.630	ENSECAG00000010639	UPF1	100	91.630	Equus_caballus
ENSMALG00000018100	-	100	91.367	ENSELUG00000020917	upf1	100	91.457	Esox_lucius
ENSMALG00000018100	-	100	93.890	ENSELUG00000012916	-	100	93.890	Esox_lucius
ENSMALG00000018100	-	100	90.501	ENSFCAG00000009757	UPF1	100	90.501	Felis_catus
ENSMALG00000018100	-	95	93.162	ENSFALG00000009312	UPF1	96	93.067	Ficedula_albicollis
ENSMALG00000018100	-	95	92.533	ENSFDAG00000014816	UPF1	99	92.439	Fukomys_damarensis
ENSMALG00000018100	-	100	88.225	ENSFHEG00000006428	upf1	100	87.790	Fundulus_heteroclitus
ENSMALG00000018100	-	87	95.856	ENSFHEG00000016276	-	96	95.856	Fundulus_heteroclitus
ENSMALG00000018100	-	100	92.844	ENSGMOG00000007541	upf1	100	92.748	Gadus_morhua
ENSMALG00000018100	-	100	91.273	ENSGALG00000003220	UPF1	100	91.362	Gallus_gallus
ENSMALG00000018100	-	64	92.157	ENSGAFG00000015443	-	88	91.794	Gambusia_affinis
ENSMALG00000018100	-	100	95.928	ENSGAFG00000004831	upf1	100	95.928	Gambusia_affinis
ENSMALG00000018100	-	100	91.831	ENSGAGG00000022217	UPF1	100	91.928	Gopherus_agassizii
ENSMALG00000018100	-	95	93.601	ENSGGOG00000002608	UPF1	99	93.505	Gorilla_gorilla
ENSMALG00000018100	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSMALG00000018100	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMALG00000018100	-	100	90.150	ENSHGLG00000010900	UPF1	100	90.150	Heterocephalus_glaber_female
ENSMALG00000018100	-	95	90.832	ENSHGLG00100005904	UPF1	96	90.737	Heterocephalus_glaber_male
ENSMALG00000018100	-	100	96.203	ENSHCOG00000008918	upf1	100	96.203	Hippocampus_comes
ENSMALG00000018100	-	100	93.496	ENSIPUG00000005108	UPF1	100	93.677	Ictalurus_punctatus
ENSMALG00000018100	-	100	91.297	ENSSTOG00000009196	UPF1	100	91.297	Ictidomys_tridecemlineatus
ENSMALG00000018100	-	100	90.177	ENSJJAG00000023151	Upf1	100	90.177	Jaculus_jaculus
ENSMALG00000018100	-	100	96.652	ENSKMAG00000004962	upf1	100	96.652	Kryptolebias_marmoratus
ENSMALG00000018100	-	100	90.536	ENSLBEG00000014862	upf1	100	91.161	Labrus_bergylta
ENSMALG00000018100	-	100	96.655	ENSLBEG00000027848	-	100	96.655	Labrus_bergylta
ENSMALG00000018100	-	64	92.877	ENSLACG00000008482	UPF1	100	92.877	Latimeria_chalumnae
ENSMALG00000018100	-	100	94.299	ENSLOCG00000002072	upf1	100	94.299	Lepisosteus_oculatus
ENSMALG00000018100	-	100	90.132	ENSLAFG00000014963	UPF1	100	90.132	Loxodonta_africana
ENSMALG00000018100	-	100	91.054	ENSMFAG00000037748	UPF1	100	91.054	Macaca_fascicularis
ENSMALG00000018100	-	100	90.813	ENSMMUG00000023286	UPF1	100	90.813	Macaca_mulatta
ENSMALG00000018100	-	100	91.054	ENSMNEG00000000046	UPF1	100	91.054	Macaca_nemestrina
ENSMALG00000018100	-	95	92.628	ENSMLEG00000028404	UPF1	99	92.533	Mandrillus_leucophaeus
ENSMALG00000018100	-	100	90.820	ENSMAMG00000006229	upf1	100	91.444	Mastacembelus_armatus
ENSMALG00000018100	-	100	97.016	ENSMAMG00000006231	-	100	97.016	Mastacembelus_armatus
ENSMALG00000018100	-	100	96.835	ENSMZEG00005016386	-	100	96.835	Maylandia_zebra
ENSMALG00000018100	-	100	90.958	ENSMZEG00005003489	upf1	100	91.226	Maylandia_zebra
ENSMALG00000018100	-	95	92.155	ENSMGAG00000004745	UPF1	100	92.060	Meleagris_gallopavo
ENSMALG00000018100	-	95	92.155	ENSMAUG00000011398	Upf1	95	92.060	Mesocricetus_auratus
ENSMALG00000018100	-	100	91.208	ENSMICG00000001659	UPF1	100	91.208	Microcebus_murinus
ENSMALG00000018100	-	100	90.371	ENSMOCG00000005699	Upf1	100	90.459	Microtus_ochrogaster
ENSMALG00000018100	-	100	91.222	ENSMMOG00000007881	upf1	100	91.591	Mola_mola
ENSMALG00000018100	-	95	94.948	ENSMMOG00000007537	-	99	94.948	Mola_mola
ENSMALG00000018100	-	100	89.991	ENSMODG00000003689	UPF1	100	89.991	Monodelphis_domestica
ENSMALG00000018100	-	100	91.169	MGP_CAROLIEiJ_G0031142	Upf1	100	91.169	Mus_caroli
ENSMALG00000018100	-	100	91.169	ENSMUSG00000058301	Upf1	100	91.169	Mus_musculus
ENSMALG00000018100	-	100	91.169	MGP_PahariEiJ_G0021607	Upf1	100	91.169	Mus_pahari
ENSMALG00000018100	-	100	91.169	MGP_SPRETEiJ_G0032260	Upf1	100	91.169	Mus_spretus
ENSMALG00000018100	-	100	91.474	ENSMPUG00000015516	UPF1	100	91.474	Mustela_putorius_furo
ENSMALG00000018100	-	99	91.266	ENSMLUG00000012122	UPF1	99	91.266	Myotis_lucifugus
ENSMALG00000018100	-	100	89.868	ENSNGAG00000024107	Upf1	100	89.868	Nannospalax_galili
ENSMALG00000018100	-	100	93.287	ENSNBRG00000022069	-	100	96.035	Neolamprologus_brichardi
ENSMALG00000018100	-	100	90.407	ENSNBRG00000000670	upf1	100	90.407	Neolamprologus_brichardi
ENSMALG00000018100	-	95	86.957	ENSNLEG00000006062	UPF1	99	86.862	Nomascus_leucogenys
ENSMALG00000018100	-	83	87.016	ENSMEUG00000014146	-	83	86.822	Notamacropus_eugenii
ENSMALG00000018100	-	95	86.533	ENSOPRG00000014018	UPF1	99	86.437	Ochotona_princeps
ENSMALG00000018100	-	100	91.308	ENSODEG00000012426	UPF1	100	91.406	Octodon_degus
ENSMALG00000018100	-	100	96.926	ENSONIG00000012729	-	100	96.926	Oreochromis_niloticus
ENSMALG00000018100	-	100	91.137	ENSONIG00000010452	upf1	100	91.406	Oreochromis_niloticus
ENSMALG00000018100	-	100	90.300	ENSOANG00000004568	UPF1	100	89.446	Ornithorhynchus_anatinus
ENSMALG00000018100	-	100	96.199	ENSORLG00000008453	upf1	100	96.199	Oryzias_latipes
ENSMALG00000018100	-	100	96.112	ENSORLG00020014758	upf1	100	96.112	Oryzias_latipes_hni
ENSMALG00000018100	-	100	96.112	ENSORLG00015010165	upf1	100	96.112	Oryzias_latipes_hsok
ENSMALG00000018100	-	100	96.018	ENSOMEG00000003665	upf1	100	96.018	Oryzias_melastigma
ENSMALG00000018100	-	100	91.385	ENSOGAG00000012866	UPF1	100	91.385	Otolemur_garnettii
ENSMALG00000018100	-	96	89.652	ENSOARG00000010739	UPF1	100	89.560	Ovis_aries
ENSMALG00000018100	-	95	92.628	ENSPPAG00000043884	UPF1	96	92.533	Pan_paniscus
ENSMALG00000018100	-	100	90.501	ENSPPRG00000023470	UPF1	100	90.501	Panthera_pardus
ENSMALG00000018100	-	95	91.611	ENSPTIG00000010159	UPF1	99	91.516	Panthera_tigris_altaica
ENSMALG00000018100	-	100	91.054	ENSPTRG00000010721	UPF1	100	91.054	Pan_troglodytes
ENSMALG00000018100	-	100	91.054	ENSPANG00000008847	UPF1	100	91.054	Papio_anubis
ENSMALG00000018100	-	91	93.478	ENSPKIG00000006069	upf1	95	94.383	Paramormyrops_kingsleyae
ENSMALG00000018100	-	70	91.958	ENSPSIG00000009491	UPF1	100	91.829	Pelodiscus_sinensis
ENSMALG00000018100	-	100	90.261	ENSPMGG00000017327	upf1	100	90.352	Periophthalmus_magnuspinnatus
ENSMALG00000018100	-	100	90.371	ENSPEMG00000001085	Upf1	100	90.371	Peromyscus_maniculatus_bairdii
ENSMALG00000018100	-	100	86.535	ENSPMAG00000001206	upf1	100	86.086	Petromyzon_marinus
ENSMALG00000018100	-	100	91.370	ENSPCIG00000006156	UPF1	100	91.370	Phascolarctos_cinereus
ENSMALG00000018100	-	100	89.865	ENSPLAG00000018155	-	100	89.417	Poecilia_latipinna
ENSMALG00000018100	-	100	96.018	ENSPLAG00000016232	-	100	96.018	Poecilia_latipinna
ENSMALG00000018100	-	100	90.425	ENSPMEG00000011443	-	100	89.955	Poecilia_mexicana
ENSMALG00000018100	-	100	95.931	ENSPMEG00000016319	-	100	95.931	Poecilia_mexicana
ENSMALG00000018100	-	100	90.242	ENSPREG00000009940	upf1	100	89.794	Poecilia_reticulata
ENSMALG00000018100	-	100	95.928	ENSPREG00000011247	-	100	95.928	Poecilia_reticulata
ENSMALG00000018100	-	100	85.664	ENSPPYG00000009752	UPF1	100	85.488	Pongo_abelii
ENSMALG00000018100	-	75	97.980	ENSPCAG00000012962	UPF1	75	97.980	Procavia_capensis
ENSMALG00000018100	-	100	90.981	ENSPCOG00000023813	UPF1	100	90.981	Propithecus_coquereli
ENSMALG00000018100	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMALG00000018100	-	100	90.958	ENSPNYG00000003694	upf1	100	91.226	Pundamilia_nyererei
ENSMALG00000018100	-	100	96.745	ENSPNYG00000016731	-	100	96.745	Pundamilia_nyererei
ENSMALG00000018100	-	100	92.954	ENSPNAG00000025614	upf1	100	93.135	Pygocentrus_nattereri
ENSMALG00000018100	-	100	91.169	ENSRNOG00000020134	Upf1	100	91.169	Rattus_norvegicus
ENSMALG00000018100	-	95	90.265	ENSRBIG00000013894	UPF1	98	93.145	Rhinopithecus_bieti
ENSMALG00000018100	-	95	92.628	ENSRROG00000040935	UPF1	98	93.145	Rhinopithecus_roxellana
ENSMALG00000018100	-	75	55.437	YMR080C	NAM7	87	55.437	Saccharomyces_cerevisiae
ENSMALG00000018100	-	94	92.694	ENSSBOG00000023632	UPF1	96	92.600	Saimiri_boliviensis_boliviensis
ENSMALG00000018100	-	95	92.351	ENSSHAG00000010499	UPF1	100	92.257	Sarcophilus_harrisii
ENSMALG00000018100	-	100	94.033	ENSSFOG00015021095	upf1	100	94.033	Scleropages_formosus
ENSMALG00000018100	-	100	97.107	ENSSMAG00000021018	-	100	97.107	Scophthalmus_maximus
ENSMALG00000018100	-	100	90.268	ENSSMAG00000005055	upf1	100	90.982	Scophthalmus_maximus
ENSMALG00000018100	-	100	90.731	ENSSDUG00000013320	upf1	100	91.444	Seriola_dumerili
ENSMALG00000018100	-	100	97.468	ENSSDUG00000009629	-	100	97.468	Seriola_dumerili
ENSMALG00000018100	-	100	97.468	ENSSLDG00000006878	-	100	97.468	Seriola_lalandi_dorsalis
ENSMALG00000018100	-	100	91.547	ENSSLDG00000020868	upf1	100	91.906	Seriola_lalandi_dorsalis
ENSMALG00000018100	-	100	91.667	ENSSPUG00000010538	UPF1	100	91.935	Sphenodon_punctatus
ENSMALG00000018100	-	100	89.711	ENSSPAG00000000003	upf1	100	89.593	Stegastes_partitus
ENSMALG00000018100	-	100	97.104	ENSSPAG00000011521	-	100	97.104	Stegastes_partitus
ENSMALG00000018100	-	100	91.630	ENSSSCG00000039301	UPF1	99	93.518	Sus_scrofa
ENSMALG00000018100	-	82	86.064	ENSTGUG00000001057	UPF1	100	90.680	Taeniopygia_guttata
ENSMALG00000018100	-	100	95.566	ENSTRUG00000005131	-	100	95.566	Takifugu_rubripes
ENSMALG00000018100	-	100	91.320	ENSTRUG00000000150	upf1	100	91.320	Takifugu_rubripes
ENSMALG00000018100	-	100	88.068	ENSTTRG00000011544	UPF1	100	87.979	Tursiops_truncatus
ENSMALG00000018100	-	100	91.385	ENSUAMG00000007093	UPF1	100	91.385	Ursus_americanus
ENSMALG00000018100	-	95	93.613	ENSUMAG00000006652	UPF1	99	93.711	Ursus_maritimus
ENSMALG00000018100	-	100	91.474	ENSVVUG00000007797	UPF1	100	91.474	Vulpes_vulpes
ENSMALG00000018100	-	100	78.207	ENSXETG00000013602	upf1	100	78.207	Xenopus_tropicalis
ENSMALG00000018100	-	97	89.888	ENSXCOG00000015275	-	96	89.888	Xiphophorus_couchianus
ENSMALG00000018100	-	94	96.236	ENSXCOG00000005764	-	100	96.236	Xiphophorus_couchianus
ENSMALG00000018100	-	100	95.750	ENSXMAG00000002540	-	100	95.750	Xiphophorus_maculatus
ENSMALG00000018100	-	100	90.136	ENSXMAG00000001703	-	100	90.136	Xiphophorus_maculatus