EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000018159 (Gene tree)
Gene ID: 109966843
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 5504 bases
Position: chrKV884808.1:566728-572231
Accession: 109966843
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000026148	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000026629	-	3339	XM_020612021	ENSMALP00000026148	143 (aa)	XP_020467677	UPI0009B30AE7

Gene Model

Click here to download ENSMALG00000018159's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03018	RNA degradation	KEGG
malb03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000018159's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000018159	lsm4	69	33.333	ENSMALG00000016490	si:ch73-14h10.2	82	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000018159	lsm4	62	97.727	ENSG00000130520	LSM4	99	77.143	Homo_sapiens
ENSMALG00000018159	lsm4	100	90.728	ENSAPOG00000005643	lsm4	100	90.728	Acanthochromis_polyacanthus
ENSMALG00000018159	lsm4	61	97.701	ENSAMEG00000011162	LSM4	93	76.978	Ailuropoda_melanoleuca
ENSMALG00000018159	lsm4	100	92.568	ENSAOCG00000006414	lsm4	100	92.568	Amphiprion_ocellaris
ENSMALG00000018159	lsm4	100	91.946	ENSAPEG00000006238	lsm4	100	91.946	Amphiprion_percula
ENSMALG00000018159	lsm4	100	92.105	ENSATEG00000016559	lsm4	100	92.105	Anabas_testudineus
ENSMALG00000018159	lsm4	62	97.727	ENSANAG00000034659	LSM4	99	77.143	Aotus_nancymaae
ENSMALG00000018159	lsm4	100	91.156	ENSACLG00000022738	lsm4	100	91.837	Astatotilapia_calliptera
ENSMALG00000018159	lsm4	100	90.278	ENSAMXG00000016932	lsm4	100	89.583	Astyanax_mexicanus
ENSMALG00000018159	lsm4	62	97.727	ENSBTAG00000008578	LSM4	99	77.143	Bos_taurus
ENSMALG00000018159	lsm4	58	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSMALG00000018159	lsm4	62	97.727	ENSCJAG00000014171	LSM4	99	77.143	Callithrix_jacchus
ENSMALG00000018159	lsm4	62	97.727	ENSCAFG00000014900	LSM4	90	77.143	Canis_familiaris
ENSMALG00000018159	lsm4	62	97.727	ENSCAFG00020012137	LSM4	99	77.143	Canis_lupus_dingo
ENSMALG00000018159	lsm4	61	97.701	ENSCHIG00000010928	LSM4	90	76.259	Capra_hircus
ENSMALG00000018159	lsm4	62	96.591	ENSTSYG00000030906	LSM4	99	76.429	Carlito_syrichta
ENSMALG00000018159	lsm4	62	96.591	ENSCAPG00000014140	LSM4	96	77.372	Cavia_aperea
ENSMALG00000018159	lsm4	62	96.591	ENSCPOG00000024117	LSM4	96	77.372	Cavia_porcellus
ENSMALG00000018159	lsm4	62	97.727	ENSCCAG00000036308	LSM4	99	77.143	Cebus_capucinus
ENSMALG00000018159	lsm4	62	97.727	ENSCATG00000029311	LSM4	99	77.143	Cercocebus_atys
ENSMALG00000018159	lsm4	62	97.727	ENSCLAG00000010828	LSM4	99	76.429	Chinchilla_lanigera
ENSMALG00000018159	lsm4	62	97.727	ENSCSAG00000005370	LSM4	99	77.143	Chlorocebus_sabaeus
ENSMALG00000018159	lsm4	62	98.864	ENSCPBG00000012925	LSM4	96	83.088	Chrysemys_picta_bellii
ENSMALG00000018159	lsm4	60	91.860	ENSCING00000007519	-	78	84.848	Ciona_intestinalis
ENSMALG00000018159	lsm4	60	91.860	ENSCSAVG00000008596	-	79	84.848	Ciona_savignyi
ENSMALG00000018159	lsm4	62	97.727	ENSCANG00000043686	LSM4	99	77.143	Colobus_angolensis_palliatus
ENSMALG00000018159	lsm4	62	94.318	ENSCGRG00001014436	Lsm4	99	73.913	Cricetulus_griseus_chok1gshd
ENSMALG00000018159	lsm4	61	94.253	ENSCGRG00000009398	Lsm4	99	73.723	Cricetulus_griseus_crigri
ENSMALG00000018159	lsm4	100	86.713	ENSCSEG00000016127	lsm4	100	93.706	Cynoglossus_semilaevis
ENSMALG00000018159	lsm4	90	92.969	ENSCVAG00000021828	lsm4	98	92.969	Cyprinodon_variegatus
ENSMALG00000018159	lsm4	100	93.706	ENSCVAG00000010601	lsm4	100	93.706	Cyprinodon_variegatus
ENSMALG00000018159	lsm4	96	84.722	ENSDARG00000023852	lsm4	99	82.394	Danio_rerio
ENSMALG00000018159	lsm4	62	96.591	ENSDORG00000024225	Lsm4	99	75.714	Dipodomys_ordii
ENSMALG00000018159	lsm4	70	81.000	FBgn0032240	CG17768	63	80.808	Drosophila_melanogaster
ENSMALG00000018159	lsm4	51	98.630	ENSETEG00000007762	-	98	76.000	Echinops_telfairi
ENSMALG00000018159	lsm4	56	88.750	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSMALG00000018159	lsm4	62	97.727	ENSECAG00000010141	LSM4	56	76.429	Equus_caballus
ENSMALG00000018159	lsm4	93	90.977	ENSELUG00000012821	lsm4	100	90.977	Esox_lucius
ENSMALG00000018159	lsm4	62	97.727	ENSFCAG00000040580	LSM4	99	77.143	Felis_catus
ENSMALG00000018159	lsm4	61	98.851	ENSFALG00000009478	LSM4	96	82.222	Ficedula_albicollis
ENSMALG00000018159	lsm4	61	97.701	ENSFDAG00000010124	LSM4	99	76.978	Fukomys_damarensis
ENSMALG00000018159	lsm4	99	82.993	ENSGMOG00000007729	lsm4	99	79.054	Gadus_morhua
ENSMALG00000018159	lsm4	62	98.864	ENSGALG00000003385	LSM4	96	82.353	Gallus_gallus
ENSMALG00000018159	lsm4	100	91.608	ENSGAFG00000004903	lsm4	97	89.062	Gambusia_affinis
ENSMALG00000018159	lsm4	100	81.333	ENSGACG00000008140	lsm4	100	84.667	Gasterosteus_aculeatus
ENSMALG00000018159	lsm4	62	98.864	ENSGAGG00000017812	LSM4	96	83.088	Gopherus_agassizii
ENSMALG00000018159	lsm4	62	97.727	ENSGGOG00000012914	-	99	77.143	Gorilla_gorilla
ENSMALG00000018159	lsm4	100	91.781	ENSHBUG00000008858	lsm4	80	92.466	Haplochromis_burtoni
ENSMALG00000018159	lsm4	97	77.536	ENSHGLG00000006568	LSM4	99	77.536	Heterocephalus_glaber_female
ENSMALG00000018159	lsm4	64	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSMALG00000018159	lsm4	100	94.406	ENSHCOG00000008819	lsm4	100	94.406	Hippocampus_comes
ENSMALG00000018159	lsm4	100	89.583	ENSIPUG00000005368	Lsm4	100	88.889	Ictalurus_punctatus
ENSMALG00000018159	lsm4	62	97.727	ENSSTOG00000016494	LSM4	99	77.143	Ictidomys_tridecemlineatus
ENSMALG00000018159	lsm4	62	95.455	ENSJJAG00000017420	Lsm4	99	75.714	Jaculus_jaculus
ENSMALG00000018159	lsm4	100	94.444	ENSKMAG00000005073	lsm4	100	95.139	Kryptolebias_marmoratus
ENSMALG00000018159	lsm4	100	91.946	ENSLBEG00000027930	lsm4	100	91.946	Labrus_bergylta
ENSMALG00000018159	lsm4	62	98.864	ENSLACG00000015861	LSM4	99	82.143	Latimeria_chalumnae
ENSMALG00000018159	lsm4	71	96.040	ENSLOCG00000002025	lsm4	100	85.417	Lepisosteus_oculatus
ENSMALG00000018159	lsm4	61	98.851	ENSLAFG00000017459	LSM4	98	78.417	Loxodonta_africana
ENSMALG00000018159	lsm4	62	97.727	ENSMFAG00000031194	LSM4	99	77.143	Macaca_fascicularis
ENSMALG00000018159	lsm4	62	97.727	ENSMMUG00000004405	LSM4	99	77.143	Macaca_mulatta
ENSMALG00000018159	lsm4	62	97.727	ENSMNEG00000042899	LSM4	99	77.143	Macaca_nemestrina
ENSMALG00000018159	lsm4	62	97.727	ENSMLEG00000027948	LSM4	99	77.143	Mandrillus_leucophaeus
ENSMALG00000018159	lsm4	100	94.406	ENSMAMG00000006190	lsm4	100	94.406	Mastacembelus_armatus
ENSMALG00000018159	lsm4	100	91.781	ENSMZEG00005016420	lsm4	100	92.466	Maylandia_zebra
ENSMALG00000018159	lsm4	94	77.206	ENSMGAG00000004976	LSM4	96	79.851	Meleagris_gallopavo
ENSMALG00000018159	lsm4	69	94.949	ENSMICG00000000222	LSM4	99	76.429	Microcebus_murinus
ENSMALG00000018159	lsm4	62	94.318	ENSMOCG00000020861	Lsm4	99	73.913	Microtus_ochrogaster
ENSMALG00000018159	lsm4	51	98.630	ENSMODG00000015044	-	98	75.200	Monodelphis_domestica
ENSMALG00000018159	lsm4	62	94.318	MGP_CAROLIEiJ_G0031158	Lsm4	99	73.913	Mus_caroli
ENSMALG00000018159	lsm4	62	94.318	ENSMUSG00000031848	Lsm4	96	86.869	Mus_musculus
ENSMALG00000018159	lsm4	62	94.318	MGP_PahariEiJ_G0021623	Lsm4	99	73.913	Mus_pahari
ENSMALG00000018159	lsm4	62	94.318	MGP_SPRETEiJ_G0032276	Lsm4	99	73.913	Mus_spretus
ENSMALG00000018159	lsm4	62	97.727	ENSMPUG00000015589	LSM4	99	77.143	Mustela_putorius_furo
ENSMALG00000018159	lsm4	61	97.701	ENSMLUG00000004010	LSM4	98	76.978	Myotis_lucifugus
ENSMALG00000018159	lsm4	62	94.318	ENSNGAG00000008644	Lsm4	99	73.913	Nannospalax_galili
ENSMALG00000018159	lsm4	76	96.296	ENSNBRG00000022150	lsm4	67	96.296	Neolamprologus_brichardi
ENSMALG00000018159	lsm4	51	94.521	ENSMEUG00000013229	LSM4	98	70.732	Notamacropus_eugenii
ENSMALG00000018159	lsm4	54	96.104	ENSOPRG00000005575	LSM4	98	73.984	Ochotona_princeps
ENSMALG00000018159	lsm4	97	62.143	ENSODEG00000011712	-	98	62.143	Octodon_degus
ENSMALG00000018159	lsm4	62	97.727	ENSODEG00000020549	-	99	76.429	Octodon_degus
ENSMALG00000018159	lsm4	62	88.636	ENSODEG00000004519	-	99	69.565	Octodon_degus
ENSMALG00000018159	lsm4	100	91.156	ENSONIG00000012724	lsm4	100	91.837	Oreochromis_niloticus
ENSMALG00000018159	lsm4	61	93.407	ENSOANG00000007434	LSM4	88	92.157	Ornithorhynchus_anatinus
ENSMALG00000018159	lsm4	100	93.750	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSMALG00000018159	lsm4	100	94.444	ENSORLG00020014829	lsm4	100	94.444	Oryzias_latipes_hni
ENSMALG00000018159	lsm4	100	93.750	ENSORLG00015010205	lsm4	100	93.750	Oryzias_latipes_hsok
ENSMALG00000018159	lsm4	100	90.972	ENSOMEG00000003606	lsm4	100	90.972	Oryzias_melastigma
ENSMALG00000018159	lsm4	69	94.898	ENSOGAG00000027992	LSM4	99	72.414	Otolemur_garnettii
ENSMALG00000018159	lsm4	61	97.701	ENSOARG00000012553	LSM4	95	75.806	Ovis_aries
ENSMALG00000018159	lsm4	62	97.727	ENSPPAG00000044045	-	99	77.143	Pan_paniscus
ENSMALG00000018159	lsm4	62	97.727	ENSPPRG00000018264	LSM4	99	77.143	Panthera_pardus
ENSMALG00000018159	lsm4	61	97.701	ENSPTIG00000006306	LSM4	99	76.978	Panthera_tigris_altaica
ENSMALG00000018159	lsm4	62	97.727	ENSPTRG00000031470	LSM4	99	77.143	Pan_troglodytes
ENSMALG00000018159	lsm4	62	97.727	ENSPANG00000014399	LSM4	99	77.143	Papio_anubis
ENSMALG00000018159	lsm4	100	88.889	ENSPKIG00000006154	lsm4	100	88.889	Paramormyrops_kingsleyae
ENSMALG00000018159	lsm4	94	85.185	ENSPSIG00000012358	LSM4	96	83.704	Pelodiscus_sinensis
ENSMALG00000018159	lsm4	62	94.318	ENSPEMG00000001358	Lsm4	99	73.913	Peromyscus_maniculatus_bairdii
ENSMALG00000018159	lsm4	100	91.608	ENSPFOG00000000570	lsm4	76	91.608	Poecilia_formosa
ENSMALG00000018159	lsm4	100	91.608	ENSPLAG00000016267	lsm4	100	91.608	Poecilia_latipinna
ENSMALG00000018159	lsm4	100	91.608	ENSPMEG00000016378	lsm4	100	91.608	Poecilia_mexicana
ENSMALG00000018159	lsm4	100	92.308	ENSPREG00000011290	lsm4	76	92.308	Poecilia_reticulata
ENSMALG00000018159	lsm4	62	97.727	ENSPPYG00000009736	LSM4	99	77.143	Pongo_abelii
ENSMALG00000018159	lsm4	51	98.630	ENSPCAG00000008513	LSM4	98	76.000	Procavia_capensis
ENSMALG00000018159	lsm4	69	94.949	ENSPCOG00000019837	LSM4	99	76.429	Propithecus_coquereli
ENSMALG00000018159	lsm4	62	97.727	ENSPVAG00000015383	LSM4	99	77.143	Pteropus_vampyrus
ENSMALG00000018159	lsm4	100	91.781	ENSPNYG00000016794	lsm4	100	92.466	Pundamilia_nyererei
ENSMALG00000018159	lsm4	95	91.912	ENSPNAG00000016598	lsm4	100	91.912	Pygocentrus_nattereri
ENSMALG00000018159	lsm4	62	94.318	ENSRNOG00000019572	Lsm4	99	73.913	Rattus_norvegicus
ENSMALG00000018159	lsm4	62	97.727	ENSRBIG00000024717	LSM4	99	77.143	Rhinopithecus_bieti
ENSMALG00000018159	lsm4	62	97.727	ENSRROG00000045706	LSM4	99	77.143	Rhinopithecus_roxellana
ENSMALG00000018159	lsm4	58	40.860	YER112W	LSM4	51	41.053	Saccharomyces_cerevisiae
ENSMALG00000018159	lsm4	52	97.297	ENSSBOG00000022455	LSM4	98	74.603	Saimiri_boliviensis_boliviensis
ENSMALG00000018159	lsm4	62	98.864	ENSSHAG00000011559	LSM4	99	77.857	Sarcophilus_harrisii
ENSMALG00000018159	lsm4	100	89.583	ENSSFOG00015021067	lsm4	100	89.583	Scleropages_formosus
ENSMALG00000018159	lsm4	100	77.333	ENSSMAG00000021020	lsm4	100	86.667	Scophthalmus_maximus
ENSMALG00000018159	lsm4	100	82.635	ENSSDUG00000009588	lsm4	100	82.635	Seriola_dumerili
ENSMALG00000018159	lsm4	100	82.143	ENSSLDG00000006827	lsm4	100	82.143	Seriola_lalandi_dorsalis
ENSMALG00000018159	lsm4	61	98.851	ENSSPUG00000010166	LSM4	63	96.939	Sphenodon_punctatus
ENSMALG00000018159	lsm4	100	90.728	ENSSPAG00000011615	lsm4	100	90.728	Stegastes_partitus
ENSMALG00000018159	lsm4	62	97.727	ENSSSCG00000034314	LSM4	99	77.143	Sus_scrofa
ENSMALG00000018159	lsm4	100	91.608	ENSTRUG00000021737	lsm4	100	91.608	Takifugu_rubripes
ENSMALG00000018159	lsm4	100	86.111	ENSTNIG00000010191	lsm4	100	90.278	Tetraodon_nigroviridis
ENSMALG00000018159	lsm4	62	97.727	ENSUAMG00000000665	LSM4	82	95.960	Ursus_americanus
ENSMALG00000018159	lsm4	62	97.727	ENSUMAG00000009013	LSM4	99	77.143	Ursus_maritimus
ENSMALG00000018159	lsm4	61	97.701	ENSVVUG00000008136	LSM4	70	76.978	Vulpes_vulpes
ENSMALG00000018159	lsm4	97	76.812	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSMALG00000018159	lsm4	100	91.608	ENSXMAG00000026672	lsm4	76	91.608	Xiphophorus_maculatus