EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMALG00000020092 (Gene tree)
Gene ID: 109969310
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Minus strand
Length: 2199 bases
Position: chrKV884860.1:490312-492510
Accession: 109969310
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000029053	RRM_1	PF00076.22	9.3e-26	1	1
ENSMALP00000029061	RRM_1	PF00076.22	9.5e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000029584	-	590	XM_020616087	ENSMALP00000029061	182 (aa)	XP_020471743	UPI0009B30033
ENSMALT00000029576	-	625	XM_020616088	ENSMALP00000029053	180 (aa)	XP_020471744	-

Gene Model

Click here to download ENSMALG00000020092's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000020092's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMALG00000020092	cirbpa	59	41.667	ENSMALG00000016659	elavl3	61	41.096
ENSMALG00000020092	cirbpa	52	49.296	ENSMALG00000009691	hnrnpa3	63	47.368
ENSMALG00000020092	cirbpa	61	37.500	ENSMALG00000021265	-	69	37.500
ENSMALG00000020092	cirbpa	50	34.783	ENSMALG00000021269	-	56	35.135

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000020092	cirbpa	99	84.444	ENSACIG00000016116	cirbpa	98	86.667	Amphilophus_citrinellus
ENSMALG00000020092	cirbpa	99	70.879	ENSAOCG00000016212	cirbpa	98	69.892	Amphiprion_ocellaris
ENSMALG00000020092	cirbpa	100	70.270	ENSAPEG00000011989	cirbpa	100	70.213	Amphiprion_percula
ENSMALG00000020092	cirbpa	100	85.083	ENSATEG00000014985	cirbpa	100	84.530	Anabas_testudineus
ENSMALG00000020092	cirbpa	99	90.055	ENSACLG00000002094	-	100	87.293	Astatotilapia_calliptera
ENSMALG00000020092	cirbpa	100	52.941	ENSAMXG00000015612	cirbpb	82	59.239	Astyanax_mexicanus
ENSMALG00000020092	cirbpa	100	63.212	ENSCSEG00000014344	cirbpa	100	64.249	Cynoglossus_semilaevis
ENSMALG00000020092	cirbpa	100	83.784	ENSCVAG00000004853	cirbpa	100	85.165	Cyprinodon_variegatus
ENSMALG00000020092	cirbpa	100	59.140	ENSDARG00000103672	cirbpa	100	58.602	Danio_rerio
ENSMALG00000020092	cirbpa	73	57.576	ENSELUG00000004675	-	79	58.940	Esox_lucius
ENSMALG00000020092	cirbpa	99	76.374	ENSFHEG00000002580	cirbpa	100	77.297	Fundulus_heteroclitus
ENSMALG00000020092	cirbpa	99	53.886	ENSGMOG00000007179	cirbpb	97	51.546	Gadus_morhua
ENSMALG00000020092	cirbpa	100	78.919	ENSGAFG00000008654	cirbpa	100	77.838	Gambusia_affinis
ENSMALG00000020092	cirbpa	100	64.921	ENSGACG00000015206	cirbpa	100	65.263	Gasterosteus_aculeatus
ENSMALG00000020092	cirbpa	100	89.130	ENSHBUG00000022060	cirbpa	100	87.293	Haplochromis_burtoni
ENSMALG00000020092	cirbpa	99	77.222	ENSKMAG00000005905	cirbpa	100	73.481	Kryptolebias_marmoratus
ENSMALG00000020092	cirbpa	100	64.286	ENSLBEG00000000292	cirbpa	100	60.000	Labrus_bergylta
ENSMALG00000020092	cirbpa	100	87.912	ENSMAMG00000010168	cirbpa	100	87.912	Mastacembelus_armatus
ENSMALG00000020092	cirbpa	100	89.130	ENSMZEG00005025577	-	100	86.740	Maylandia_zebra
ENSMALG00000020092	cirbpa	100	89.130	ENSNBRG00000019658	cirbpa	100	86.740	Neolamprologus_brichardi
ENSMALG00000020092	cirbpa	99	83.333	ENSONIG00000010169	cirbpa	98	85.556	Oreochromis_niloticus
ENSMALG00000020092	cirbpa	99	83.889	ENSORLG00000015433	cirbpa	98	78.333	Oryzias_latipes
ENSMALG00000020092	cirbpa	99	83.889	ENSORLG00020016909	cirbpa	98	78.333	Oryzias_latipes_hni
ENSMALG00000020092	cirbpa	99	83.889	ENSORLG00015016636	cirbpa	98	78.333	Oryzias_latipes_hsok
ENSMALG00000020092	cirbpa	99	81.564	ENSOMEG00000021469	cirbpa	72	75.978	Oryzias_melastigma
ENSMALG00000020092	cirbpa	99	70.166	ENSPMGG00000017342	cirbpa	94	70.109	Periophthalmus_magnuspinnatus
ENSMALG00000020092	cirbpa	99	85.165	ENSPFOG00000015653	cirbpa	100	81.421	Poecilia_formosa
ENSMALG00000020092	cirbpa	99	85.165	ENSPLAG00000011125	cirbpa	100	82.514	Poecilia_latipinna
ENSMALG00000020092	cirbpa	100	84.409	ENSPMEG00000013878	cirbpa	100	82.514	Poecilia_mexicana
ENSMALG00000020092	cirbpa	99	89.944	ENSPREG00000018042	cirbpa	98	84.066	Poecilia_reticulata
ENSMALG00000020092	cirbpa	100	89.130	ENSPNYG00000007198	-	100	86.413	Pundamilia_nyererei
ENSMALG00000020092	cirbpa	100	57.711	ENSPNAG00000019997	cirbpb	100	56.716	Pygocentrus_nattereri
ENSMALG00000020092	cirbpa	100	57.219	ENSSFOG00015005346	cirbpb	100	62.766	Scleropages_formosus
ENSMALG00000020092	cirbpa	100	69.898	ENSSMAG00000002412	cirbpa	100	62.245	Scophthalmus_maximus
ENSMALG00000020092	cirbpa	99	71.910	ENSSDUG00000016099	cirbpa	100	68.132	Seriola_dumerili
ENSMALG00000020092	cirbpa	99	72.626	ENSSPAG00000023037	cirbpa	99	61.878	Stegastes_partitus
ENSMALG00000020092	cirbpa	100	69.444	ENSTRUG00000010187	cirbpa	100	65.556	Takifugu_rubripes
ENSMALG00000020092	cirbpa	99	73.743	ENSTNIG00000000450	cirbpa	100	68.852	Tetraodon_nigroviridis
ENSMALG00000020092	cirbpa	99	88.827	ENSXCOG00000008262	cirbpa	92	93.151	Xiphophorus_couchianus
ENSMALG00000020092	cirbpa	100	87.978	ENSXMAG00000019336	cirbpa	100	85.792	Xiphophorus_maculatus