EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000020545 (Gene tree)
Gene ID: 109973952
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 14853 bases
Position: chrKV885001.1:128813-143665
Accession: 109973952
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000029794	CPSF_A	PF03178.15	3.9e-92	1	1
ENSMALP00000029759	CPSF_A	PF03178.15	4.2e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000030289	-	4540	-	ENSMALP00000029759	1505 (aa)	-	-
ENSMALT00000030324	-	4435	XM_020623860	ENSMALP00000029794	1470 (aa)	XP_020479516	UPI0009B3A5ED

Gene Model

Click here to download ENSMALG00000020545's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000020545's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000020545	cpsf1	100	77.673	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSMALG00000020545	cpsf1	100	93.954	ENSAPOG00000019621	cpsf1	100	93.886	Acanthochromis_polyacanthus
ENSMALG00000020545	cpsf1	97	76.639	ENSAMEG00000005557	CPSF1	99	76.151	Ailuropoda_melanoleuca
ENSMALG00000020545	cpsf1	100	89.492	ENSACIG00000006112	cpsf1	100	89.763	Amphilophus_citrinellus
ENSMALG00000020545	cpsf1	100	90.331	ENSAOCG00000007120	cpsf1	100	90.196	Amphiprion_ocellaris
ENSMALG00000020545	cpsf1	100	91.346	ENSAPEG00000005755	cpsf1	100	91.143	Amphiprion_percula
ENSMALG00000020545	cpsf1	100	93.419	ENSATEG00000011097	cpsf1	100	93.419	Anabas_testudineus
ENSMALG00000020545	cpsf1	93	73.183	ENSACAG00000009655	CPSF1	100	73.110	Anolis_carolinensis
ENSMALG00000020545	cpsf1	100	77.673	ENSANAG00000036514	CPSF1	100	77.740	Aotus_nancymaae
ENSMALG00000020545	cpsf1	99	93.686	ENSACLG00000012231	cpsf1	99	93.428	Astatotilapia_calliptera
ENSMALG00000020545	cpsf1	100	78.702	ENSAMXG00000008485	cpsf1	100	78.296	Astyanax_mexicanus
ENSMALG00000020545	cpsf1	100	76.678	ENSBTAG00000008355	CPSF1	100	77.317	Bos_taurus
ENSMALG00000020545	cpsf1	100	32.621	WBGene00022301	cpsf-1	99	41.525	Caenorhabditis_elegans
ENSMALG00000020545	cpsf1	100	77.808	ENSCJAG00000021421	CPSF1	100	77.673	Callithrix_jacchus
ENSMALG00000020545	cpsf1	97	78.307	ENSCAFG00000001600	CPSF1	100	77.515	Canis_familiaris
ENSMALG00000020545	cpsf1	100	77.770	ENSCAFG00020020821	CPSF1	100	77.635	Canis_lupus_dingo
ENSMALG00000020545	cpsf1	100	74.290	ENSCHIG00000015833	CPSF1	100	74.001	Capra_hircus
ENSMALG00000020545	cpsf1	100	78.011	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSMALG00000020545	cpsf1	97	77.289	ENSCAPG00000014921	CPSF1	99	77.149	Cavia_aperea
ENSMALG00000020545	cpsf1	100	76.658	ENSCPOG00000011448	CPSF1	100	76.522	Cavia_porcellus
ENSMALG00000020545	cpsf1	100	77.958	ENSCCAG00000037658	CPSF1	100	79.358	Cebus_capucinus
ENSMALG00000020545	cpsf1	100	77.537	ENSCATG00000037234	CPSF1	100	79.167	Cercocebus_atys
ENSMALG00000020545	cpsf1	100	78.131	ENSCLAG00000012166	CPSF1	100	77.996	Chinchilla_lanigera
ENSMALG00000020545	cpsf1	100	77.808	ENSCSAG00000008502	CPSF1	100	77.605	Chlorocebus_sabaeus
ENSMALG00000020545	cpsf1	99	79.289	ENSCPBG00000018910	CPSF1	99	77.279	Chrysemys_picta_bellii
ENSMALG00000020545	cpsf1	96	47.997	ENSCING00000000514	-	100	48.067	Ciona_intestinalis
ENSMALG00000020545	cpsf1	99	48.685	ENSCSAVG00000002293	-	99	50.698	Ciona_savignyi
ENSMALG00000020545	cpsf1	98	75.138	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSMALG00000020545	cpsf1	100	77.725	ENSCGRG00001016344	Cpsf1	100	77.522	Cricetulus_griseus_chok1gshd
ENSMALG00000020545	cpsf1	100	76.303	ENSCGRG00000003118	Cpsf1	100	76.032	Cricetulus_griseus_crigri
ENSMALG00000020545	cpsf1	100	86.237	ENSCSEG00000013464	cpsf1	99	89.481	Cynoglossus_semilaevis
ENSMALG00000020545	cpsf1	86	86.085	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSMALG00000020545	cpsf1	100	86.536	ENSDARG00000034178	cpsf1	100	86.536	Danio_rerio
ENSMALG00000020545	cpsf1	59	77.540	ENSDNOG00000043654	CPSF1	96	77.273	Dasypus_novemcinctus
ENSMALG00000020545	cpsf1	97	77.856	ENSDORG00000006278	Cpsf1	99	77.926	Dipodomys_ordii
ENSMALG00000020545	cpsf1	100	43.923	FBgn0024698	Cpsf160	100	43.804	Drosophila_melanogaster
ENSMALG00000020545	cpsf1	81	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSMALG00000020545	cpsf1	100	77.770	ENSEASG00005010774	CPSF1	100	77.838	Equus_asinus_asinus
ENSMALG00000020545	cpsf1	100	77.635	ENSECAG00000022209	CPSF1	100	77.703	Equus_caballus
ENSMALG00000020545	cpsf1	100	77.313	ENSEEUG00000000471	CPSF1	100	77.313	Erinaceus_europaeus
ENSMALG00000020545	cpsf1	100	86.089	ENSELUG00000012271	cpsf1	100	85.887	Esox_lucius
ENSMALG00000020545	cpsf1	100	78.199	ENSFDAG00000016060	CPSF1	100	78.064	Fukomys_damarensis
ENSMALG00000020545	cpsf1	100	87.365	ENSFHEG00000016801	cpsf1	100	87.635	Fundulus_heteroclitus
ENSMALG00000020545	cpsf1	100	86.342	ENSGMOG00000000796	cpsf1	100	86.275	Gadus_morhua
ENSMALG00000020545	cpsf1	95	91.071	ENSGAFG00000018890	cpsf1	99	91.071	Gambusia_affinis
ENSMALG00000020545	cpsf1	100	89.009	ENSGACG00000008703	cpsf1	100	88.844	Gasterosteus_aculeatus
ENSMALG00000020545	cpsf1	100	76.502	ENSGAGG00000004276	CPSF1	98	79.690	Gopherus_agassizii
ENSMALG00000020545	cpsf1	100	77.725	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSMALG00000020545	cpsf1	100	91.361	ENSHBUG00000018900	cpsf1	100	91.565	Haplochromis_burtoni
ENSMALG00000020545	cpsf1	100	78.199	ENSHGLG00000016139	CPSF1	100	78.064	Heterocephalus_glaber_female
ENSMALG00000020545	cpsf1	100	78.131	ENSHGLG00100009750	CPSF1	100	77.996	Heterocephalus_glaber_male
ENSMALG00000020545	cpsf1	100	89.524	ENSHCOG00000018509	cpsf1	100	89.116	Hippocampus_comes
ENSMALG00000020545	cpsf1	100	82.826	ENSIPUG00000011259	cpsf1	100	82.297	Ictalurus_punctatus
ENSMALG00000020545	cpsf1	97	77.507	ENSSTOG00000009957	CPSF1	99	77.646	Ictidomys_tridecemlineatus
ENSMALG00000020545	cpsf1	100	77.928	ENSJJAG00000023002	Cpsf1	100	77.725	Jaculus_jaculus
ENSMALG00000020545	cpsf1	91	94.357	ENSKMAG00000001940	cpsf1	99	94.357	Kryptolebias_marmoratus
ENSMALG00000020545	cpsf1	100	91.156	ENSLBEG00000003601	cpsf1	100	91.973	Labrus_bergylta
ENSMALG00000020545	cpsf1	87	79.306	ENSLACG00000000233	CPSF1	92	79.067	Latimeria_chalumnae
ENSMALG00000020545	cpsf1	100	81.322	ENSLOCG00000008484	cpsf1	100	81.659	Lepisosteus_oculatus
ENSMALG00000020545	cpsf1	97	78.018	ENSLAFG00000022601	CPSF1	100	77.948	Loxodonta_africana
ENSMALG00000020545	cpsf1	100	77.537	ENSMFAG00000037013	CPSF1	100	79.167	Macaca_fascicularis
ENSMALG00000020545	cpsf1	100	77.537	ENSMMUG00000007380	CPSF1	100	81.150	Macaca_mulatta
ENSMALG00000020545	cpsf1	97	77.972	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSMALG00000020545	cpsf1	100	77.537	ENSMLEG00000043010	CPSF1	100	79.167	Mandrillus_leucophaeus
ENSMALG00000020545	cpsf1	100	95.177	ENSMAMG00000003803	cpsf1	100	94.905	Mastacembelus_armatus
ENSMALG00000020545	cpsf1	100	87.687	ENSMZEG00005001168	cpsf1	100	87.891	Maylandia_zebra
ENSMALG00000020545	cpsf1	100	77.793	ENSMAUG00000003601	Cpsf1	100	77.522	Mesocricetus_auratus
ENSMALG00000020545	cpsf1	100	77.861	ENSMICG00000015767	CPSF1	100	77.454	Microcebus_murinus
ENSMALG00000020545	cpsf1	100	77.319	ENSMOCG00000022758	Cpsf1	100	77.116	Microtus_ochrogaster
ENSMALG00000020545	cpsf1	100	89.777	ENSMMOG00000021245	cpsf1	100	89.912	Mola_mola
ENSMALG00000020545	cpsf1	100	77.905	ENSMODG00000010755	CPSF1	100	77.905	Monodelphis_domestica
ENSMALG00000020545	cpsf1	100	77.861	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.657	Mus_caroli
ENSMALG00000020545	cpsf1	100	77.793	ENSMUSG00000034022	Cpsf1	100	77.590	Mus_musculus
ENSMALG00000020545	cpsf1	100	77.861	MGP_PahariEiJ_G0019946	Cpsf1	100	77.657	Mus_pahari
ENSMALG00000020545	cpsf1	100	77.861	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.657	Mus_spretus
ENSMALG00000020545	cpsf1	94	78.484	ENSMPUG00000006419	CPSF1	96	76.643	Mustela_putorius_furo
ENSMALG00000020545	cpsf1	100	77.657	ENSNGAG00000022460	Cpsf1	100	77.454	Nannospalax_galili
ENSMALG00000020545	cpsf1	94	91.051	ENSNBRG00000000813	cpsf1	97	91.051	Neolamprologus_brichardi
ENSMALG00000020545	cpsf1	80	85.350	ENSNLEG00000010633	-	94	85.350	Nomascus_leucogenys
ENSMALG00000020545	cpsf1	83	86.047	ENSMEUG00000014922	CPSF1	85	86.047	Notamacropus_eugenii
ENSMALG00000020545	cpsf1	61	88.947	ENSOPRG00000004693	-	70	88.947	Ochotona_princeps
ENSMALG00000020545	cpsf1	100	78.199	ENSODEG00000013995	CPSF1	100	78.131	Octodon_degus
ENSMALG00000020545	cpsf1	100	91.469	ENSONIG00000007676	cpsf1	100	91.198	Oreochromis_niloticus
ENSMALG00000020545	cpsf1	59	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSMALG00000020545	cpsf1	100	90.204	ENSORLG00000013544	cpsf1	100	89.932	Oryzias_latipes
ENSMALG00000020545	cpsf1	100	90.204	ENSORLG00020021693	cpsf1	100	89.932	Oryzias_latipes_hni
ENSMALG00000020545	cpsf1	100	90.204	ENSORLG00015009979	cpsf1	100	90.000	Oryzias_latipes_hsok
ENSMALG00000020545	cpsf1	100	90.279	ENSOMEG00000011849	cpsf1	100	90.143	Oryzias_melastigma
ENSMALG00000020545	cpsf1	100	78.078	ENSOGAG00000000315	CPSF1	100	77.943	Otolemur_garnettii
ENSMALG00000020545	cpsf1	100	77.740	ENSPPAG00000019280	CPSF1	100	80.995	Pan_paniscus
ENSMALG00000020545	cpsf1	100	76.447	ENSPTRG00000051253	-	100	80.995	Pan_troglodytes
ENSMALG00000020545	cpsf1	100	77.740	ENSPTRG00000049288	-	100	80.995	Pan_troglodytes
ENSMALG00000020545	cpsf1	97	77.972	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSMALG00000020545	cpsf1	100	85.386	ENSPKIG00000002582	cpsf1	100	85.541	Paramormyrops_kingsleyae
ENSMALG00000020545	cpsf1	100	78.041	ENSPCIG00000009035	CPSF1	100	78.041	Phascolarctos_cinereus
ENSMALG00000020545	cpsf1	100	89.803	ENSPFOG00000012870	cpsf1	100	90.075	Poecilia_formosa
ENSMALG00000020545	cpsf1	100	89.810	ENSPREG00000016307	cpsf1	100	90.014	Poecilia_reticulata
ENSMALG00000020545	cpsf1	100	70.907	ENSPPYG00000018973	CPSF1	100	70.636	Pongo_abelii
ENSMALG00000020545	cpsf1	91	85.227	ENSPCAG00000011541	CPSF1	94	85.227	Procavia_capensis
ENSMALG00000020545	cpsf1	100	74.628	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSMALG00000020545	cpsf1	91	88.000	ENSPVAG00000006761	CPSF1	91	88.000	Pteropus_vampyrus
ENSMALG00000020545	cpsf1	100	93.882	ENSPNYG00000004906	cpsf1	100	93.678	Pundamilia_nyererei
ENSMALG00000020545	cpsf1	100	81.559	ENSPNAG00000024395	cpsf1	100	81.288	Pygocentrus_nattereri
ENSMALG00000020545	cpsf1	100	77.898	ENSRNOG00000030705	Cpsf1	100	77.695	Rattus_norvegicus
ENSMALG00000020545	cpsf1	100	77.605	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSMALG00000020545	cpsf1	100	77.673	ENSRROG00000044861	CPSF1	100	79.630	Rhinopithecus_roxellana
ENSMALG00000020545	cpsf1	97	78.182	ENSSBOG00000027177	CPSF1	99	78.151	Saimiri_boliviensis_boliviensis
ENSMALG00000020545	cpsf1	100	77.973	ENSSHAG00000006500	CPSF1	100	77.973	Sarcophilus_harrisii
ENSMALG00000020545	cpsf1	100	83.570	ENSSFOG00015004606	cpsf1	100	86.500	Scleropages_formosus
ENSMALG00000020545	cpsf1	100	92.668	ENSSMAG00000020547	cpsf1	100	92.872	Scophthalmus_maximus
ENSMALG00000020545	cpsf1	100	91.298	ENSSDUG00000001100	cpsf1	100	91.366	Seriola_dumerili
ENSMALG00000020545	cpsf1	100	91.366	ENSSLDG00000003619	cpsf1	100	90.959	Seriola_lalandi_dorsalis
ENSMALG00000020545	cpsf1	89	74.548	ENSSARG00000003643	CPSF1	92	74.391	Sorex_araneus
ENSMALG00000020545	cpsf1	96	80.366	ENSSPUG00000014396	CPSF1	99	80.141	Sphenodon_punctatus
ENSMALG00000020545	cpsf1	100	93.954	ENSSPAG00000005349	cpsf1	100	93.886	Stegastes_partitus
ENSMALG00000020545	cpsf1	100	76.892	ENSSSCG00000005906	CPSF1	100	76.892	Sus_scrofa
ENSMALG00000020545	cpsf1	96	89.930	ENSTRUG00000013134	cpsf1	99	89.648	Takifugu_rubripes
ENSMALG00000020545	cpsf1	100	88.881	ENSTNIG00000014027	cpsf1	100	88.814	Tetraodon_nigroviridis
ENSMALG00000020545	cpsf1	78	71.405	ENSTBEG00000001756	CPSF1	91	70.588	Tupaia_belangeri
ENSMALG00000020545	cpsf1	90	83.793	ENSTTRG00000001937	CPSF1	90	83.621	Tursiops_truncatus
ENSMALG00000020545	cpsf1	97	78.088	ENSUAMG00000006476	CPSF1	98	77.669	Ursus_americanus
ENSMALG00000020545	cpsf1	100	87.483	ENSXCOG00000003608	cpsf1	100	87.619	Xiphophorus_couchianus
ENSMALG00000020545	cpsf1	100	86.472	ENSXMAG00000005798	cpsf1	100	86.889	Xiphophorus_maculatus