EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMALG00000020738 (Gene tree)
Gene ID: 109957239
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: zinc finger CCCH domain-containing protein 39-like
Gene Type: protein_coding
Species: Monopterus_albus
Status: putative
Strand: Plus strand
Length: 7021 bases
Position: chrKV884713.1:2041652-2048672
Accession: 109957239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMALP00000029961	zf-CCCH	PF00642.24	7.7e-37	1	5
ENSMALP00000029961	zf-CCCH	PF00642.24	7.7e-37	2	5
ENSMALP00000029961	zf-CCCH	PF00642.24	7.7e-37	3	5
ENSMALP00000029961	zf-CCCH	PF00642.24	7.7e-37	4	5
ENSMALP00000029961	zf-CCCH	PF00642.24	7.7e-37	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMALT00000030492	-	6011	XM_020594963	ENSMALP00000029961	371 (aa)	XP_020450619	UPI0009B34B74

Gene Model

Click here to download ENSMALG00000020738's gene model file

Pathways

Pathway ID	Pathway Name	Source
malb04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMALG00000020738's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMALG00000020738	cth1	57	72.603	ENSAPOG00000012552	cth1	95	58.944	Acanthochromis_polyacanthus
ENSMALG00000020738	cth1	58	73.991	ENSAOCG00000001644	cth1	100	59.626	Amphiprion_ocellaris
ENSMALG00000020738	cth1	58	73.991	ENSAPEG00000008930	cth1	100	59.626	Amphiprion_percula
ENSMALG00000020738	cth1	61	71.915	ENSATEG00000002281	cth1	97	64.815	Anabas_testudineus
ENSMALG00000020738	cth1	57	66.512	ENSACLG00000015353	cth1	75	65.581	Astatotilapia_calliptera
ENSMALG00000020738	cth1	97	44.959	ENSAMXG00000025717	cth1	98	46.950	Astyanax_mexicanus
ENSMALG00000020738	cth1	58	71.556	ENSCSEG00000014617	cth1	100	60.053	Cynoglossus_semilaevis
ENSMALG00000020738	cth1	58	63.303	ENSCVAG00000001680	cth1	65	51.579	Cyprinodon_variegatus
ENSMALG00000020738	cth1	60	58.952	ENSDARG00000057328	cth1	100	47.668	Danio_rerio
ENSMALG00000020738	cth1	61	58.650	ENSELUG00000012738	cth1	69	58.650	Esox_lucius
ENSMALG00000020738	cth1	61	60.000	ENSFHEG00000022665	cth1	100	51.482	Fundulus_heteroclitus
ENSMALG00000020738	cth1	58	64.091	ENSGMOG00000007360	cth1	100	51.194	Gadus_morhua
ENSMALG00000020738	cth1	58	58.371	ENSGAFG00000019288	cth1	100	48.525	Gambusia_affinis
ENSMALG00000020738	cth1	65	63.600	ENSGACG00000000802	cth1	99	55.914	Gasterosteus_aculeatus
ENSMALG00000020738	cth1	58	66.055	ENSHBUG00000014400	cth1	100	49.072	Haplochromis_burtoni
ENSMALG00000020738	cth1	58	55.963	ENSHCOG00000010276	cth1	82	52.049	Hippocampus_comes
ENSMALG00000020738	cth1	60	60.262	ENSIPUG00000018040	cth1	95	47.467	Ictalurus_punctatus
ENSMALG00000020738	cth1	58	63.964	ENSKMAG00000005944	cth1	100	52.520	Kryptolebias_marmoratus
ENSMALG00000020738	cth1	58	75.893	ENSLBEG00000019253	cth1	100	64.644	Labrus_bergylta
ENSMALG00000020738	cth1	74	48.341	ENSLOCG00000002047	cth1	98	47.393	Lepisosteus_oculatus
ENSMALG00000020738	cth1	99	67.539	ENSMAMG00000001525	cth1	99	67.539	Mastacembelus_armatus
ENSMALG00000020738	cth1	58	65.596	ENSMZEG00005022335	cth1	100	49.072	Maylandia_zebra
ENSMALG00000020738	cth1	53	69.951	ENSMMOG00000020518	cth1	100	58.543	Mola_mola
ENSMALG00000020738	cth1	58	66.516	ENSONIG00000021318	cth1	99	52.267	Oreochromis_niloticus
ENSMALG00000020738	cth1	58	60.000	ENSORLG00000022847	cth1	100	52.139	Oryzias_latipes
ENSMALG00000020738	cth1	58	60.455	ENSORLG00020011979	cth1	100	52.674	Oryzias_latipes_hni
ENSMALG00000020738	cth1	58	60.455	ENSORLG00015013084	cth1	100	52.139	Oryzias_latipes_hsok
ENSMALG00000020738	cth1	100	54.978	ENSOMEG00000005809	cth1	76	54.030	Oryzias_melastigma
ENSMALG00000020738	cth1	61	54.783	ENSPKIG00000015883	cth1	67	53.913	Paramormyrops_kingsleyae
ENSMALG00000020738	cth1	60	67.811	ENSPMGG00000004275	cth1	100	59.786	Periophthalmus_magnuspinnatus
ENSMALG00000020738	cth1	58	58.824	ENSPFOG00000013583	cth1	94	50.402	Poecilia_formosa
ENSMALG00000020738	cth1	58	59.729	ENSPLAG00000018158	cth1	94	50.670	Poecilia_latipinna
ENSMALG00000020738	cth1	58	58.824	ENSPMEG00000005744	cth1	100	50.402	Poecilia_mexicana
ENSMALG00000020738	cth1	60	59.052	ENSPREG00000004099	cth1	99	51.491	Poecilia_reticulata
ENSMALG00000020738	cth1	51	64.737	ENSPNYG00000016705	cth1	58	66.667	Pundamilia_nyererei
ENSMALG00000020738	cth1	60	56.332	ENSPNAG00000013147	cth1	99	44.081	Pygocentrus_nattereri
ENSMALG00000020738	cth1	53	55.189	ENSSFOG00015017190	cth1	66	53.488	Scleropages_formosus
ENSMALG00000020738	cth1	58	75.676	ENSSMAG00000007977	cth1	100	62.500	Scophthalmus_maximus
ENSMALG00000020738	cth1	58	76.549	ENSSDUG00000004321	cth1	100	65.535	Seriola_dumerili
ENSMALG00000020738	cth1	69	66.045	ENSSLDG00000012760	cth1	100	65.885	Seriola_lalandi_dorsalis
ENSMALG00000020738	cth1	69	66.045	ENSSLDG00000010023	-	100	66.057	Seriola_lalandi_dorsalis
ENSMALG00000020738	cth1	69	66.045	ENSSLDG00000004516	-	100	65.885	Seriola_lalandi_dorsalis
ENSMALG00000020738	cth1	58	74.324	ENSSPAG00000018659	cth1	100	61.497	Stegastes_partitus
ENSMALG00000020738	cth1	66	62.302	ENSTRUG00000012770	cth1	100	57.368	Takifugu_rubripes
ENSMALG00000020738	cth1	58	65.333	ENSTNIG00000000740	cth1	100	52.632	Tetraodon_nigroviridis
ENSMALG00000020738	cth1	50	58.730	ENSXCOG00000003710	cth1	82	43.894	Xiphophorus_couchianus
ENSMALG00000020738	cth1	61	57.872	ENSXMAG00000023885	cth1	100	54.692	Xiphophorus_maculatus