EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000000828 (Gene tree)
Gene ID: 113123507
Gene Symbol: SMARCAL1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12313 bases
Position: chrOOHQ01000093.1:12640358-12652670
Accession: 113123507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000001151	ResIII	PF04851.15	2.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000001176	SMARCAL1-201	6391	-	ENSMAMP00000001151	879 (aa)	XP_026151443	UPI000E4540F9

Gene Model

Click here to download ENSMAMG00000000828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000000828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000000828	SMARCAL1	99	51.246	ENSG00000138375	SMARCAL1	99	66.460	Homo_sapiens
ENSMAMG00000000828	SMARCAL1	99	79.000	ENSAPOG00000020156	SMARCAL1	98	79.111	Acanthochromis_polyacanthus
ENSMAMG00000000828	SMARCAL1	95	87.822	ENSACIG00000001500	smarcal1	97	87.822	Amphilophus_citrinellus
ENSMAMG00000000828	SMARCAL1	99	78.556	ENSAOCG00000014266	SMARCAL1	99	78.667	Amphiprion_ocellaris
ENSMAMG00000000828	SMARCAL1	99	78.889	ENSAPEG00000015861	SMARCAL1	98	83.913	Amphiprion_percula
ENSMAMG00000000828	SMARCAL1	99	80.466	ENSATEG00000020624	SMARCAL1	98	80.466	Anabas_testudineus
ENSMAMG00000000828	SMARCAL1	96	54.467	ENSAPLG00000009864	SMARCAL1	96	54.286	Anas_platyrhynchos
ENSMAMG00000000828	SMARCAL1	98	62.550	ENSACAG00000004612	SMARCAL1	97	62.550	Anolis_carolinensis
ENSMAMG00000000828	SMARCAL1	99	79.551	ENSACLG00000015990	SMARCAL1	98	79.551	Astatotilapia_calliptera
ENSMAMG00000000828	SMARCAL1	99	67.466	ENSAMXG00000003350	smarcal1	96	67.466	Astyanax_mexicanus
ENSMAMG00000000828	SMARCAL1	98	53.927	ENSCPBG00000013599	SMARCAL1	96	53.927	Chrysemys_picta_bellii
ENSMAMG00000000828	SMARCAL1	72	48.281	ENSCING00000009308	-	100	48.281	Ciona_intestinalis
ENSMAMG00000000828	SMARCAL1	99	74.580	ENSCSEG00000010785	SMARCAL1	99	74.803	Cynoglossus_semilaevis
ENSMAMG00000000828	SMARCAL1	99	73.462	ENSCVAG00000018780	SMARCAL1	97	73.462	Cyprinodon_variegatus
ENSMAMG00000000828	SMARCAL1	80	46.676	ENSEBUG00000011906	SMARCAL1	99	45.753	Eptatretus_burgeri
ENSMAMG00000000828	SMARCAL1	79	77.986	ENSELUG00000010440	-	72	74.899	Esox_lucius
ENSMAMG00000000828	SMARCAL1	82	62.155	ENSFALG00000003981	SMARCAL1	75	62.155	Ficedula_albicollis
ENSMAMG00000000828	SMARCAL1	100	73.962	ENSFHEG00000008380	SMARCAL1	97	74.688	Fundulus_heteroclitus
ENSMAMG00000000828	SMARCAL1	62	75.650	ENSGMOG00000010034	smarcal1	94	69.851	Gadus_morhua
ENSMAMG00000000828	SMARCAL1	98	53.698	ENSGALG00000011475	RPL37A	96	53.698	Gallus_gallus
ENSMAMG00000000828	SMARCAL1	91	81.949	ENSGACG00000006073	SMARCAL1	100	86.778	Gasterosteus_aculeatus
ENSMAMG00000000828	SMARCAL1	95	65.762	ENSGAGG00000015660	SMARCAL1	99	65.663	Gopherus_agassizii
ENSMAMG00000000828	SMARCAL1	99	79.326	ENSHBUG00000002973	smarcal1	98	79.326	Haplochromis_burtoni
ENSMAMG00000000828	SMARCAL1	97	72.929	ENSHCOG00000017921	smarcal1	98	72.929	Hippocampus_comes
ENSMAMG00000000828	SMARCAL1	99	74.914	ENSKMAG00000012023	SMARCAL1	99	74.914	Kryptolebias_marmoratus
ENSMAMG00000000828	SMARCAL1	92	77.596	ENSLBEG00000003493	smarcal1	100	77.596	Labrus_bergylta
ENSMAMG00000000828	SMARCAL1	95	80.364	ENSLBEG00000022915	smarcal1	100	80.364	Labrus_bergylta
ENSMAMG00000000828	SMARCAL1	98	52.391	ENSLACG00000010974	SMARCAL1	96	52.448	Latimeria_chalumnae
ENSMAMG00000000828	SMARCAL1	95	65.161	ENSLOCG00000009637	smarcal1	99	65.161	Lepisosteus_oculatus
ENSMAMG00000000828	SMARCAL1	99	79.438	ENSMZEG00005007660	SMARCAL1	98	79.438	Maylandia_zebra
ENSMAMG00000000828	SMARCAL1	98	55.165	ENSMGAG00000011658	SMARCAL1	96	55.275	Meleagris_gallopavo
ENSMAMG00000000828	SMARCAL1	95	73.798	ENSMMOG00000003842	smarcal1	94	73.798	Mola_mola
ENSMAMG00000000828	SMARCAL1	98	52.295	ENSMODG00000015544	SMARCAL1	96	52.295	Monodelphis_domestica
ENSMAMG00000000828	SMARCAL1	95	86.533	ENSNBRG00000016273	smarcal1	97	86.533	Neolamprologus_brichardi
ENSMAMG00000000828	SMARCAL1	73	62.871	ENSMEUG00000004395	SMARCAL1	100	51.624	Notamacropus_eugenii
ENSMAMG00000000828	SMARCAL1	99	79.237	ENSONIG00000009036	smarcal1	100	87.719	Oreochromis_niloticus
ENSMAMG00000000828	SMARCAL1	99	74.497	ENSORLG00000016455	SMARCAL1	98	74.497	Oryzias_latipes
ENSMAMG00000000828	SMARCAL1	99	75.000	ENSORLG00020001610	SMARCAL1	98	75.000	Oryzias_latipes_hni
ENSMAMG00000000828	SMARCAL1	99	75.085	ENSORLG00015001865	SMARCAL1	98	75.085	Oryzias_latipes_hsok
ENSMAMG00000000828	SMARCAL1	99	75.792	ENSOMEG00000001845	smarcal1	98	75.792	Oryzias_melastigma
ENSMAMG00000000828	SMARCAL1	99	72.799	ENSPMGG00000019092	SMARCAL1	98	73.138	Periophthalmus_magnuspinnatus
ENSMAMG00000000828	SMARCAL1	96	51.348	ENSPCIG00000022514	SMARCAL1	99	51.313	Phascolarctos_cinereus
ENSMAMG00000000828	SMARCAL1	99	74.411	ENSPFOG00000000560	SMARCAL1	97	74.411	Poecilia_formosa
ENSMAMG00000000828	SMARCAL1	99	74.523	ENSPMEG00000018146	SMARCAL1	97	74.523	Poecilia_mexicana
ENSMAMG00000000828	SMARCAL1	64	85.648	ENSPREG00000009591	SMARCAL1	99	85.648	Poecilia_reticulata
ENSMAMG00000000828	SMARCAL1	99	66.743	ENSPNAG00000014900	smarcal1	92	66.178	Pygocentrus_nattereri
ENSMAMG00000000828	SMARCAL1	99	49.836	ENSSHAG00000013538	SMARCAL1	97	49.782	Sarcophilus_harrisii
ENSMAMG00000000828	SMARCAL1	99	79.162	ENSSMAG00000010427	SMARCAL1	98	79.162	Scophthalmus_maximus
ENSMAMG00000000828	SMARCAL1	99	82.235	ENSSDUG00000017470	SMARCAL1	95	82.235	Seriola_dumerili
ENSMAMG00000000828	SMARCAL1	99	81.909	ENSSLDG00000007224	SMARCAL1	98	81.909	Seriola_lalandi_dorsalis
ENSMAMG00000000828	SMARCAL1	98	66.185	ENSSPUG00000015369	SMARCAL1	96	66.185	Sphenodon_punctatus
ENSMAMG00000000828	SMARCAL1	95	78.846	ENSSPAG00000003742	smarcal1	99	79.928	Stegastes_partitus
ENSMAMG00000000828	SMARCAL1	78	57.580	ENSSSCG00000035501	SMARCAL1	77	57.872	Sus_scrofa
ENSMAMG00000000828	SMARCAL1	77	62.849	ENSTGUG00000005079	SMARCAL1	99	62.849	Taeniopygia_guttata
ENSMAMG00000000828	SMARCAL1	99	67.684	ENSTRUG00000010701	SMARCAL1	99	67.684	Takifugu_rubripes
ENSMAMG00000000828	SMARCAL1	99	45.207	ENSTTRG00000009001	SMARCAL1	96	45.207	Tursiops_truncatus
ENSMAMG00000000828	SMARCAL1	99	57.018	ENSXETG00000000465	smarcal1	97	57.018	Xenopus_tropicalis