EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000001718 (Gene tree)
Gene ID: 113128363
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat containing 6C2
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 16536 bases
Position: chrOOHQ01000044.1:23971447-23987982
Accession: ZDB-GENE-061207-48
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000002451	Ago_hook	PF10427.9	1.9e-08	1	1
ENSMAMP00000002451	RRM_1	PF00076.22	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000002499	-	5246	-	ENSMAMP00000002451	1639 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000001718's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000001718's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000001718	tnrc6c2	100	56.977	ENSMAMG00000023613	tnrc6c1	100	55.797

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000001718	tnrc6c2	100	88.747	ENSAOCG00000017648	tnrc6c2	87	88.564	Amphiprion_ocellaris
ENSMAMG00000001718	tnrc6c2	95	90.077	ENSATEG00000003656	tnrc6c2	57	90.518	Anabas_testudineus
ENSMAMG00000001718	tnrc6c2	100	88.375	ENSACLG00000006469	tnrc6c2	88	88.740	Astatotilapia_calliptera
ENSMAMG00000001718	tnrc6c2	100	58.733	ENSAMXG00000009579	tnrc6c2	99	57.904	Astyanax_mexicanus
ENSMAMG00000001718	tnrc6c2	100	58.781	ENSDARG00000103851	tnrc6c2	100	57.621	Danio_rerio
ENSMAMG00000001718	tnrc6c2	90	68.147	ENSELUG00000008149	-	94	54.826	Esox_lucius
ENSMAMG00000001718	tnrc6c2	55	75.000	ENSELUG00000007206	tnrc6c2	59	74.459	Esox_lucius
ENSMAMG00000001718	tnrc6c2	100	82.199	ENSFHEG00000003901	tnrc6c2	100	82.039	Fundulus_heteroclitus
ENSMAMG00000001718	tnrc6c2	100	76.711	ENSGACG00000019401	tnrc6c2	90	77.851	Gasterosteus_aculeatus
ENSMAMG00000001718	tnrc6c2	100	88.314	ENSHBUG00000018310	tnrc6c2	88	88.679	Haplochromis_burtoni
ENSMAMG00000001718	tnrc6c2	100	81.791	ENSHCOG00000017802	tnrc6c2	87	81.345	Hippocampus_comes
ENSMAMG00000001718	tnrc6c2	100	55.616	ENSIPUG00000022767	tnrc6c2	99	53.393	Ictalurus_punctatus
ENSMAMG00000001718	tnrc6c2	100	88.375	ENSMZEG00005023905	tnrc6c2	88	88.740	Maylandia_zebra
ENSMAMG00000001718	tnrc6c2	100	89.171	ENSMALG00000020932	tnrc6c2	100	89.050	Monopterus_albus
ENSMAMG00000001718	tnrc6c2	95	88.987	ENSNBRG00000000452	tnrc6c2	57	88.877	Neolamprologus_brichardi
ENSMAMG00000001718	tnrc6c2	98	84.769	ENSONIG00000018123	tnrc6c2	100	85.254	Oreochromis_niloticus
ENSMAMG00000001718	tnrc6c2	100	82.574	ENSORLG00000003327	tnrc6c2	87	82.149	Oryzias_latipes
ENSMAMG00000001718	tnrc6c2	100	82.149	ENSORLG00020010730	tnrc6c2	87	81.846	Oryzias_latipes_hni
ENSMAMG00000001718	tnrc6c2	100	82.442	ENSORLG00015009232	tnrc6c2	87	82.078	Oryzias_latipes_hsok
ENSMAMG00000001718	tnrc6c2	100	83.424	ENSOMEG00000017952	tnrc6c2	87	82.939	Oryzias_melastigma
ENSMAMG00000001718	tnrc6c2	95	77.331	ENSPFOG00000011590	tnrc6c2	53	76.907	Poecilia_formosa
ENSMAMG00000001718	tnrc6c2	96	86.646	ENSPLAG00000006992	tnrc6c2	60	86.751	Poecilia_latipinna
ENSMAMG00000001718	tnrc6c2	100	82.545	ENSPMEG00000012946	tnrc6c2	93	82.727	Poecilia_mexicana
ENSMAMG00000001718	tnrc6c2	96	88.292	ENSPREG00000015823	tnrc6c2	60	87.970	Poecilia_reticulata
ENSMAMG00000001718	tnrc6c2	100	87.173	ENSPNYG00000002582	tnrc6c2	100	87.842	Pundamilia_nyererei
ENSMAMG00000001718	tnrc6c2	100	58.279	ENSPNAG00000026838	tnrc6c2	99	57.970	Pygocentrus_nattereri
ENSMAMG00000001718	tnrc6c2	100	87.424	ENSSMAG00000015145	tnrc6c2	100	87.424	Scophthalmus_maximus
ENSMAMG00000001718	tnrc6c2	100	91.966	ENSSDUG00000020741	tnrc6c2	100	91.844	Seriola_dumerili
ENSMAMG00000001718	tnrc6c2	100	91.722	ENSSLDG00000002077	tnrc6c2	100	91.601	Seriola_lalandi_dorsalis
ENSMAMG00000001718	tnrc6c2	100	90.030	ENSSPAG00000013052	tnrc6c2	87	90.334	Stegastes_partitus
ENSMAMG00000001718	tnrc6c2	92	84.464	ENSTNIG00000004178	tnrc6c2	90	83.917	Tetraodon_nigroviridis
ENSMAMG00000001718	tnrc6c2	100	78.121	ENSXCOG00000013252	tnrc6c2	100	77.791	Xiphophorus_couchianus
ENSMAMG00000001718	tnrc6c2	100	83.152	ENSXMAG00000006739	tnrc6c2	100	83.212	Xiphophorus_maculatus