EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000001745 (Gene tree)
Gene ID: 113123391
Gene Symbol: rif1
Alias: fc38c03|si:dkey-89p3.2|wu:fc38c03
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 15077 bases
Position: chrOOHQ01000093.1:23287614-23302690
Accession: ZDB-GENE-030131-3406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000002732	Rif1_N	PF12231.8	2.6e-85	1	1
ENSMAMP00000002835	Rif1_N	PF12231.8	2.1e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000002787	-	6906	-	ENSMAMP00000002732	2301 (aa)	-	-
ENSMAMT00000002890	-	6585	-	ENSMAMP00000002835	2194 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000001745's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000001745's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000001745	rif1	76	49.089	ENSG00000080345	RIF1	97	53.333	Homo_sapiens
ENSMAMG00000001745	rif1	70	71.233	ENSAPOG00000011073	rif1	83	67.012	Acanthochromis_polyacanthus
ENSMAMG00000001745	rif1	59	51.222	ENSAMEG00000008461	RIF1	58	51.222	Ailuropoda_melanoleuca
ENSMAMG00000001745	rif1	73	71.947	ENSACIG00000017765	rif1	77	71.947	Amphilophus_citrinellus
ENSMAMG00000001745	rif1	83	65.761	ENSAOCG00000017231	rif1	82	67.443	Amphiprion_ocellaris
ENSMAMG00000001745	rif1	83	60.845	ENSAPEG00000013228	rif1	85	61.346	Amphiprion_percula
ENSMAMG00000001745	rif1	90	67.164	ENSATEG00000022887	rif1	87	72.085	Anabas_testudineus
ENSMAMG00000001745	rif1	57	52.531	ENSAPLG00000007092	RIF1	60	52.531	Anas_platyrhynchos
ENSMAMG00000001745	rif1	59	47.559	ENSACAG00000003714	RIF1	60	47.559	Anolis_carolinensis
ENSMAMG00000001745	rif1	65	53.685	ENSANAG00000024840	RIF1	62	53.503	Aotus_nancymaae
ENSMAMG00000001745	rif1	65	60.601	ENSAMXG00000010910	rif1	78	59.343	Astyanax_mexicanus
ENSMAMG00000001745	rif1	77	52.632	ENSBTAG00000021020	RIF1	72	48.815	Bos_taurus
ENSMAMG00000001745	rif1	67	49.693	ENSCJAG00000003138	RIF1	65	49.693	Callithrix_jacchus
ENSMAMG00000001745	rif1	73	48.808	ENSCAFG00000005670	RIF1	70	48.808	Canis_familiaris
ENSMAMG00000001745	rif1	61	50.725	ENSCAFG00020016401	RIF1	73	48.808	Canis_lupus_dingo
ENSMAMG00000001745	rif1	66	48.696	ENSCHIG00000020327	RIF1	67	51.349	Capra_hircus
ENSMAMG00000001745	rif1	65	49.541	ENSTSYG00000008861	RIF1	73	45.036	Carlito_syrichta
ENSMAMG00000001745	rif1	50	42.900	ENSCAPG00000008957	RIF1	69	42.560	Cavia_aperea
ENSMAMG00000001745	rif1	58	48.182	ENSCPOG00000037898	RIF1	59	48.332	Cavia_porcellus
ENSMAMG00000001745	rif1	60	51.085	ENSCCAG00000024760	RIF1	57	51.220	Cebus_capucinus
ENSMAMG00000001745	rif1	76	49.170	ENSCATG00000033353	RIF1	75	49.383	Cercocebus_atys
ENSMAMG00000001745	rif1	61	48.630	ENSCLAG00000001517	RIF1	62	48.586	Chinchilla_lanigera
ENSMAMG00000001745	rif1	65	49.328	ENSCSAG00000016089	RIF1	75	48.923	Chlorocebus_sabaeus
ENSMAMG00000001745	rif1	62	50.885	ENSCHOG00000007187	RIF1	71	50.885	Choloepus_hoffmanni
ENSMAMG00000001745	rif1	64	51.466	ENSCPBG00000025885	RIF1	70	51.468	Chrysemys_picta_bellii
ENSMAMG00000001745	rif1	61	57.080	ENSCANG00000028962	RIF1	74	57.333	Colobus_angolensis_palliatus
ENSMAMG00000001745	rif1	60	48.039	ENSCGRG00001024589	Rif1	60	48.135	Cricetulus_griseus_chok1gshd
ENSMAMG00000001745	rif1	59	50.887	ENSCGRG00000010713	Rif1	59	50.931	Cricetulus_griseus_crigri
ENSMAMG00000001745	rif1	68	69.475	ENSCSEG00000003945	rif1	70	69.384	Cynoglossus_semilaevis
ENSMAMG00000001745	rif1	60	66.372	ENSCVAG00000022479	rif1	72	66.549	Cyprinodon_variegatus
ENSMAMG00000001745	rif1	59	59.335	ENSDARG00000062650	rif1	61	59.229	Danio_rerio
ENSMAMG00000001745	rif1	65	48.607	ENSDNOG00000011194	RIF1	70	48.183	Dasypus_novemcinctus
ENSMAMG00000001745	rif1	63	47.253	ENSETEG00000012421	RIF1	76	45.860	Echinops_telfairi
ENSMAMG00000001745	rif1	56	69.408	ENSEASG00005023434	RIF1	58	56.034	Equus_asinus_asinus
ENSMAMG00000001745	rif1	59	50.756	ENSECAG00000012679	RIF1	62	57.553	Equus_caballus
ENSMAMG00000001745	rif1	69	64.770	ENSELUG00000006826	rif1	69	64.770	Esox_lucius
ENSMAMG00000001745	rif1	65	48.978	ENSFCAG00000029742	RIF1	75	48.758	Felis_catus
ENSMAMG00000001745	rif1	58	50.092	ENSFALG00000013874	RIF1	60	52.137	Ficedula_albicollis
ENSMAMG00000001745	rif1	59	70.228	ENSFHEG00000013721	rif1	72	70.228	Fundulus_heteroclitus
ENSMAMG00000001745	rif1	71	59.155	ENSGMOG00000003517	rif1	100	59.155	Gadus_morhua
ENSMAMG00000001745	rif1	54	50.758	ENSGALG00000012484	RIF1	67	50.758	Gallus_gallus
ENSMAMG00000001745	rif1	99	59.170	ENSGAFG00000017196	rif1	99	59.116	Gambusia_affinis
ENSMAMG00000001745	rif1	70	77.021	ENSGACG00000008579	rif1	74	75.102	Gasterosteus_aculeatus
ENSMAMG00000001745	rif1	64	51.704	ENSGAGG00000012595	RIF1	69	50.909	Gopherus_agassizii
ENSMAMG00000001745	rif1	54	57.019	ENSGGOG00000040178	RIF1	68	57.413	Gorilla_gorilla
ENSMAMG00000001745	rif1	63	69.814	ENSHBUG00000007125	rif1	59	80.508	Haplochromis_burtoni
ENSMAMG00000001745	rif1	59	50.490	ENSHGLG00100009807	RIF1	62	50.490	Heterocephalus_glaber_male
ENSMAMG00000001745	rif1	82	62.878	ENSHCOG00000015943	rif1	75	61.996	Hippocampus_comes
ENSMAMG00000001745	rif1	51	64.843	ENSIPUG00000021703	rif1	89	54.829	Ictalurus_punctatus
ENSMAMG00000001745	rif1	65	49.880	ENSSTOG00000020712	RIF1	66	48.773	Ictidomys_tridecemlineatus
ENSMAMG00000001745	rif1	64	47.961	ENSJJAG00000023000	Rif1	73	46.431	Jaculus_jaculus
ENSMAMG00000001745	rif1	64	68.689	ENSKMAG00000002852	rif1	65	68.867	Kryptolebias_marmoratus
ENSMAMG00000001745	rif1	86	66.896	ENSLBEG00000023196	rif1	75	67.559	Labrus_bergylta
ENSMAMG00000001745	rif1	54	58.000	ENSLACG00000005425	RIF1	67	46.767	Latimeria_chalumnae
ENSMAMG00000001745	rif1	66	61.702	ENSLOCG00000002657	rif1	82	62.614	Lepisosteus_oculatus
ENSMAMG00000001745	rif1	65	49.608	ENSLAFG00000009796	RIF1	65	49.294	Loxodonta_africana
ENSMAMG00000001745	rif1	65	49.128	ENSMFAG00000032233	RIF1	75	49.383	Macaca_fascicularis
ENSMAMG00000001745	rif1	65	49.128	ENSMMUG00000008611	RIF1	75	49.383	Macaca_mulatta
ENSMAMG00000001745	rif1	65	49.325	ENSMNEG00000031616	RIF1	75	48.923	Macaca_nemestrina
ENSMAMG00000001745	rif1	65	49.170	ENSMLEG00000042945	RIF1	75	49.383	Mandrillus_leucophaeus
ENSMAMG00000001745	rif1	69	72.398	ENSMZEG00005020920	rif1	99	60.778	Maylandia_zebra
ENSMAMG00000001745	rif1	68	50.709	ENSMGAG00000012732	RIF1	88	44.917	Meleagris_gallopavo
ENSMAMG00000001745	rif1	60	66.286	ENSMAUG00000013158	Rif1	62	66.286	Mesocricetus_auratus
ENSMAMG00000001745	rif1	60	53.539	ENSMICG00000046127	RIF1	57	53.267	Microcebus_murinus
ENSMAMG00000001745	rif1	65	47.720	ENSMOCG00000009381	Rif1	65	47.720	Microtus_ochrogaster
ENSMAMG00000001745	rif1	87	63.256	ENSMMOG00000006519	rif1	87	63.256	Mola_mola
ENSMAMG00000001745	rif1	74	49.363	ENSMODG00000003703	RIF1	81	44.723	Monodelphis_domestica
ENSMAMG00000001745	rif1	91	79.006	ENSMALG00000016759	rif1	99	79.006	Monopterus_albus
ENSMAMG00000001745	rif1	65	48.884	MGP_CAROLIEiJ_G0023555	Rif1	66	49.204	Mus_caroli
ENSMAMG00000001745	rif1	84	50.358	ENSMUSG00000036202	Rif1	59	50.674	Mus_musculus
ENSMAMG00000001745	rif1	83	47.207	MGP_PahariEiJ_G0025006	Rif1	72	47.207	Mus_pahari
ENSMAMG00000001745	rif1	84	51.359	MGP_SPRETEiJ_G0024476	Rif1	59	51.359	Mus_spretus
ENSMAMG00000001745	rif1	59	50.498	ENSMPUG00000000371	RIF1	73	49.004	Mustela_putorius_furo
ENSMAMG00000001745	rif1	84	53.182	ENSNGAG00000009268	Rif1	91	53.091	Nannospalax_galili
ENSMAMG00000001745	rif1	86	64.744	ENSNBRG00000014257	rif1	86	64.550	Neolamprologus_brichardi
ENSMAMG00000001745	rif1	65	48.116	ENSNLEG00000010955	RIF1	75	47.249	Nomascus_leucogenys
ENSMAMG00000001745	rif1	65	46.361	ENSODEG00000003950	RIF1	66	46.530	Octodon_degus
ENSMAMG00000001745	rif1	63	69.754	ENSONIG00000013657	rif1	71	69.750	Oreochromis_niloticus
ENSMAMG00000001745	rif1	55	54.615	ENSOANG00000006078	-	55	54.424	Ornithorhynchus_anatinus
ENSMAMG00000001745	rif1	59	50.678	ENSOCUG00000017435	RIF1	58	50.768	Oryctolagus_cuniculus
ENSMAMG00000001745	rif1	82	60.230	ENSORLG00020001302	rif1	83	59.643	Oryzias_latipes_hni
ENSMAMG00000001745	rif1	63	65.150	ENSORLG00015000009	rif1	67	65.150	Oryzias_latipes_hsok
ENSMAMG00000001745	rif1	82	62.706	ENSOMEG00000021513	rif1	77	65.517	Oryzias_melastigma
ENSMAMG00000001745	rif1	66	48.773	ENSOGAG00000006141	RIF1	65	48.773	Otolemur_garnettii
ENSMAMG00000001745	rif1	68	48.358	ENSOARG00000008930	RIF1	72	49.034	Ovis_aries
ENSMAMG00000001745	rif1	76	48.931	ENSPPAG00000023754	RIF1	74	49.007	Pan_paniscus
ENSMAMG00000001745	rif1	65	48.821	ENSPPRG00000003618	RIF1	75	48.758	Panthera_pardus
ENSMAMG00000001745	rif1	65	48.821	ENSPTIG00000020652	RIF1	75	48.758	Panthera_tigris_altaica
ENSMAMG00000001745	rif1	76	49.010	ENSPTRG00000012534	RIF1	74	49.087	Pan_troglodytes
ENSMAMG00000001745	rif1	65	49.249	ENSPANG00000008525	RIF1	75	48.923	Papio_anubis
ENSMAMG00000001745	rif1	81	65.257	ENSPKIG00000004267	rif1	63	60.121	Paramormyrops_kingsleyae
ENSMAMG00000001745	rif1	80	59.868	ENSPMGG00000016141	rif1	93	59.868	Periophthalmus_magnuspinnatus
ENSMAMG00000001745	rif1	59	52.481	ENSPEMG00000000446	Rif1	59	52.481	Peromyscus_maniculatus_bairdii
ENSMAMG00000001745	rif1	65	49.248	ENSPCIG00000009185	RIF1	71	49.209	Phascolarctos_cinereus
ENSMAMG00000001745	rif1	59	71.382	ENSPFOG00000000554	-	64	71.382	Poecilia_formosa
ENSMAMG00000001745	rif1	66	70.064	ENSPFOG00000017804	rif1	68	69.279	Poecilia_formosa
ENSMAMG00000001745	rif1	98	58.717	ENSPLAG00000017945	rif1	99	57.276	Poecilia_latipinna
ENSMAMG00000001745	rif1	56	70.643	ENSPMEG00000006897	-	63	70.643	Poecilia_mexicana
ENSMAMG00000001745	rif1	73	72.378	ENSPREG00000018052	rif1	99	57.211	Poecilia_reticulata
ENSMAMG00000001745	rif1	72	53.545	ENSPPYG00000012846	RIF1	67	53.273	Pongo_abelii
ENSMAMG00000001745	rif1	60	53.236	ENSPCOG00000027888	RIF1	67	52.963	Propithecus_coquereli
ENSMAMG00000001745	rif1	61	58.282	ENSPVAG00000014276	RIF1	63	58.282	Pteropus_vampyrus
ENSMAMG00000001745	rif1	86	69.465	ENSPNYG00000012940	rif1	99	59.822	Pundamilia_nyererei
ENSMAMG00000001745	rif1	71	51.256	ENSPNAG00000016685	rif1	68	59.982	Pygocentrus_nattereri
ENSMAMG00000001745	rif1	64	49.046	ENSRBIG00000003704	RIF1	75	48.916	Rhinopithecus_bieti
ENSMAMG00000001745	rif1	60	53.846	ENSRROG00000028206	RIF1	75	48.916	Rhinopithecus_roxellana
ENSMAMG00000001745	rif1	61	53.488	ENSSBOG00000029530	RIF1	63	53.488	Saimiri_boliviensis_boliviensis
ENSMAMG00000001745	rif1	65	49.485	ENSSHAG00000018552	RIF1	65	49.485	Sarcophilus_harrisii
ENSMAMG00000001745	rif1	65	66.168	ENSSFOG00015021539	rif1	85	66.168	Scleropages_formosus
ENSMAMG00000001745	rif1	99	69.171	ENSSMAG00000011704	rif1	93	69.545	Scophthalmus_maximus
ENSMAMG00000001745	rif1	86	73.131	ENSSDUG00000015632	rif1	76	76.268	Seriola_dumerili
ENSMAMG00000001745	rif1	73	76.032	ENSSLDG00000019531	rif1	94	72.478	Seriola_lalandi_dorsalis
ENSMAMG00000001745	rif1	66	52.476	ENSSPUG00000003062	RIF1	68	52.372	Sphenodon_punctatus
ENSMAMG00000001745	rif1	58	82.468	ENSSPAG00000018359	rif1	90	82.468	Stegastes_partitus
ENSMAMG00000001745	rif1	76	49.880	ENSSSCG00000016395	RIF1	75	49.880	Sus_scrofa
ENSMAMG00000001745	rif1	86	65.451	ENSTRUG00000015808	rif1	88	65.451	Takifugu_rubripes
ENSMAMG00000001745	rif1	64	52.857	ENSTBEG00000016082	RIF1	61	52.041	Tupaia_belangeri
ENSMAMG00000001745	rif1	66	49.178	ENSTTRG00000011190	RIF1	65	49.178	Tursiops_truncatus
ENSMAMG00000001745	rif1	54	50.000	ENSUAMG00000026385	RIF1	59	50.000	Ursus_americanus
ENSMAMG00000001745	rif1	59	50.679	ENSUMAG00000000337	RIF1	57	50.679	Ursus_maritimus
ENSMAMG00000001745	rif1	67	47.853	ENSVPAG00000002162	RIF1	75	47.441	Vicugna_pacos
ENSMAMG00000001745	rif1	75	49.166	ENSVVUG00000011293	RIF1	73	48.970	Vulpes_vulpes
ENSMAMG00000001745	rif1	70	47.869	ENSXETG00000004530	rif1	72	47.869	Xenopus_tropicalis
ENSMAMG00000001745	rif1	86	61.190	ENSXMAG00000000506	rif1	86	62.269	Xiphophorus_maculatus