EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000001780 (Gene tree)
Gene ID: 113144012
Gene Symbol: sf1
Alias: wu:fc09f06|znf162
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 10517 bases
Position: chrOOHQ01000107.1:1743650-1754166
Accession: 113144012
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000002522	KH_1	PF00013.29	3.3e-06	1	1
ENSMAMP00000002540	KH_1	PF00013.29	3.9e-06	1	1
ENSMAMP00000002522	zf-CCHC	PF00098.23	0.00046	1	1
ENSMAMP00000002540	zf-CCHC	PF00098.23	0.00052	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000002593	-	3321	-	ENSMAMP00000002540	679 (aa)	XP_026185461	UPI000E454E27
ENSMAMT00000002574	-	3354	XM_026329658	ENSMAMP00000002522	690 (aa)	XP_026185443	UPI000E45AE85

Gene Model

Click here to download ENSMAMG00000001780's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000001780's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000001780	sf1	100	95.294	ENSAPOG00000012341	sf1	100	95.294	Acanthochromis_polyacanthus
ENSMAMG00000001780	sf1	100	96.171	ENSAOCG00000010934	sf1	100	96.171	Amphiprion_ocellaris
ENSMAMG00000001780	sf1	100	96.171	ENSAPEG00000009498	sf1	100	96.171	Amphiprion_percula
ENSMAMG00000001780	sf1	100	93.913	ENSATEG00000001894	sf1	100	93.913	Anabas_testudineus
ENSMAMG00000001780	sf1	59	78.622	ENSANAG00000026664	-	90	80.928	Aotus_nancymaae
ENSMAMG00000001780	sf1	84	66.392	ENSANAG00000022607	-	88	73.995	Aotus_nancymaae
ENSMAMG00000001780	sf1	67	91.685	ENSACLG00000007633	sf1	69	91.667	Astatotilapia_calliptera
ENSMAMG00000001780	sf1	97	84.604	ENSAMXG00000003630	sf1	86	84.604	Astyanax_mexicanus
ENSMAMG00000001780	sf1	58	77.966	ENSBTAG00000001035	SF1	62	81.347	Bos_taurus
ENSMAMG00000001780	sf1	58	77.966	ENSCJAG00000002780	SF1	75	68.217	Callithrix_jacchus
ENSMAMG00000001780	sf1	58	77.966	ENSCAFG00000014239	SF1	59	81.088	Canis_familiaris
ENSMAMG00000001780	sf1	58	77.966	ENSCAFG00020014381	SF1	59	81.347	Canis_lupus_dingo
ENSMAMG00000001780	sf1	58	77.966	ENSCHIG00000025867	SF1	59	81.347	Capra_hircus
ENSMAMG00000001780	sf1	58	77.966	ENSCAPG00000010762	SF1	65	82.888	Cavia_aperea
ENSMAMG00000001780	sf1	59	71.359	ENSCCAG00000023781	-	82	72.823	Cebus_capucinus
ENSMAMG00000001780	sf1	59	77.913	ENSCCAG00000037881	SF1	90	80.928	Cebus_capucinus
ENSMAMG00000001780	sf1	58	77.966	ENSCATG00000011564	SF1	90	80.928	Cercocebus_atys
ENSMAMG00000001780	sf1	56	72.613	ENSCHOG00000006008	SF1	66	76.880	Choloepus_hoffmanni
ENSMAMG00000001780	sf1	63	80.920	ENSCPBG00000023763	SF1	68	64.338	Chrysemys_picta_bellii
ENSMAMG00000001780	sf1	60	55.952	ENSCING00000005564	-	92	55.603	Ciona_intestinalis
ENSMAMG00000001780	sf1	51	56.486	ENSCSAVG00000009055	-	72	61.765	Ciona_savignyi
ENSMAMG00000001780	sf1	58	77.966	ENSCANG00000042201	SF1	91	80.928	Colobus_angolensis_palliatus
ENSMAMG00000001780	sf1	58	78.208	ENSCGRG00001003677	Sf1	66	81.347	Cricetulus_griseus_chok1gshd
ENSMAMG00000001780	sf1	58	78.208	ENSCGRG00000001708	Sf1	65	82.888	Cricetulus_griseus_crigri
ENSMAMG00000001780	sf1	97	91.390	ENSCSEG00000014375	sf1	65	91.228	Cynoglossus_semilaevis
ENSMAMG00000001780	sf1	98	90.663	ENSCVAG00000001670	sf1	67	91.447	Cyprinodon_variegatus
ENSMAMG00000001780	sf1	84	83.538	ENSDARG00000008188	sf1	66	90.476	Danio_rerio
ENSMAMG00000001780	sf1	60	77.435	ENSDORG00000016334	Sf1	59	81.347	Dipodomys_ordii
ENSMAMG00000001780	sf1	58	72.222	ENSETEG00000012830	SF1	51	75.339	Echinops_telfairi
ENSMAMG00000001780	sf1	53	78.342	ENSEEUG00000001058	SF1	83	82.934	Erinaceus_europaeus
ENSMAMG00000001780	sf1	78	79.777	ENSELUG00000013225	sf1	60	85.313	Esox_lucius
ENSMAMG00000001780	sf1	58	77.966	ENSFCAG00000012231	SF1	75	68.217	Felis_catus
ENSMAMG00000001780	sf1	58	77.966	ENSFDAG00000009833	SF1	65	82.888	Fukomys_damarensis
ENSMAMG00000001780	sf1	67	91.028	ENSFHEG00000022656	sf1	67	91.009	Fundulus_heteroclitus
ENSMAMG00000001780	sf1	71	78.008	ENSGMOG00000007469	sf1	61	94.294	Gadus_morhua
ENSMAMG00000001780	sf1	89	89.621	ENSGAFG00000019284	sf1	74	90.789	Gambusia_affinis
ENSMAMG00000001780	sf1	63	80.690	ENSGAGG00000021691	SF1	68	70.423	Gopherus_agassizii
ENSMAMG00000001780	sf1	67	93.435	ENSHBUG00000011598	sf1	67	93.421	Haplochromis_burtoni
ENSMAMG00000001780	sf1	58	77.966	ENSHGLG00000009541	SF1	65	82.586	Heterocephalus_glaber_female
ENSMAMG00000001780	sf1	55	71.253	ENSHGLG00100008255	-	70	77.778	Heterocephalus_glaber_male
ENSMAMG00000001780	sf1	58	77.966	ENSHGLG00100013879	-	65	82.888	Heterocephalus_glaber_male
ENSMAMG00000001780	sf1	70	87.738	ENSHCOG00000011388	sf1	67	89.059	Hippocampus_comes
ENSMAMG00000001780	sf1	58	77.966	ENSSTOG00000009790	-	58	82.888	Ictidomys_tridecemlineatus
ENSMAMG00000001780	sf1	55	70.649	ENSSTOG00000024353	-	68	72.093	Ictidomys_tridecemlineatus
ENSMAMG00000001780	sf1	58	78.208	ENSJJAG00000011788	Sf1	59	81.606	Jaculus_jaculus
ENSMAMG00000001780	sf1	84	90.718	ENSKMAG00000005854	sf1	70	89.716	Kryptolebias_marmoratus
ENSMAMG00000001780	sf1	97	80.030	ENSLBEG00000019836	sf1	72	90.476	Labrus_bergylta
ENSMAMG00000001780	sf1	60	77.184	ENSLACG00000018493	SF1	67	79.200	Latimeria_chalumnae
ENSMAMG00000001780	sf1	67	79.704	ENSLOCG00000002130	sf1	66	81.702	Lepisosteus_oculatus
ENSMAMG00000001780	sf1	58	79.707	ENSLAFG00000007201	SF1	63	83.511	Loxodonta_africana
ENSMAMG00000001780	sf1	58	77.966	ENSMFAG00000033122	SF1	90	80.928	Macaca_fascicularis
ENSMAMG00000001780	sf1	58	77.966	ENSMMUG00000022606	SF1	90	82.322	Macaca_mulatta
ENSMAMG00000001780	sf1	58	77.966	ENSMNEG00000037901	SF1	90	80.928	Macaca_nemestrina
ENSMAMG00000001780	sf1	58	77.724	ENSMLEG00000040706	SF1	88	82.888	Mandrillus_leucophaeus
ENSMAMG00000001780	sf1	67	93.435	ENSMZEG00005009196	sf1	67	93.421	Maylandia_zebra
ENSMAMG00000001780	sf1	58	78.208	ENSMAUG00000014064	Sf1	66	81.347	Mesocricetus_auratus
ENSMAMG00000001780	sf1	59	77.482	ENSMICG00000001202	SF1	90	80.720	Microcebus_murinus
ENSMAMG00000001780	sf1	58	78.208	ENSMOCG00000022038	Sf1	66	81.347	Microtus_ochrogaster
ENSMAMG00000001780	sf1	86	88.832	ENSMMOG00000020474	sf1	84	91.213	Mola_mola
ENSMAMG00000001780	sf1	59	76.690	ENSMODG00000029407	SF1	80	82.850	Monodelphis_domestica
ENSMAMG00000001780	sf1	84	86.995	ENSMALG00000020521	sf1	92	89.279	Monopterus_albus
ENSMAMG00000001780	sf1	58	78.208	MGP_CAROLIEiJ_G0022607	Sf1	99	95.113	Mus_caroli
ENSMAMG00000001780	sf1	58	78.208	ENSMUSG00000024949	Sf1	99	95.113	Mus_musculus
ENSMAMG00000001780	sf1	58	78.208	MGP_PahariEiJ_G0014101	Sf1	99	95.113	Mus_pahari
ENSMAMG00000001780	sf1	58	78.208	MGP_SPRETEiJ_G0023518	Sf1	99	95.113	Mus_spretus
ENSMAMG00000001780	sf1	58	77.966	ENSMPUG00000012684	SF1	58	82.586	Mustela_putorius_furo
ENSMAMG00000001780	sf1	62	74.828	ENSMLUG00000029800	-	65	77.320	Myotis_lucifugus
ENSMAMG00000001780	sf1	58	77.966	ENSMLUG00000015217	-	58	82.507	Myotis_lucifugus
ENSMAMG00000001780	sf1	58	78.208	ENSNGAG00000005550	Sf1	66	81.606	Nannospalax_galili
ENSMAMG00000001780	sf1	58	78.125	ENSNLEG00000005236	-	91	80.928	Nomascus_leucogenys
ENSMAMG00000001780	sf1	58	76.905	ENSMEUG00000013424	SF1	68	83.019	Notamacropus_eugenii
ENSMAMG00000001780	sf1	67	93.217	ENSONIG00000015728	sf1	67	93.202	Oreochromis_niloticus
ENSMAMG00000001780	sf1	58	77.966	ENSOCUG00000026486	SF1	59	82.322	Oryctolagus_cuniculus
ENSMAMG00000001780	sf1	70	88.136	ENSORLG00000011853	sf1	66	89.693	Oryzias_latipes
ENSMAMG00000001780	sf1	70	88.559	ENSORLG00020011834	sf1	66	90.132	Oryzias_latipes_hni
ENSMAMG00000001780	sf1	68	88.478	ENSORLG00015012855	sf1	66	89.254	Oryzias_latipes_hsok
ENSMAMG00000001780	sf1	97	90.606	ENSOMEG00000005210	sf1	67	91.009	Oryzias_melastigma
ENSMAMG00000001780	sf1	58	77.966	ENSOGAG00000016196	SF1	59	81.088	Otolemur_garnettii
ENSMAMG00000001780	sf1	58	77.966	ENSOARG00000009166	SF1	66	81.088	Ovis_aries
ENSMAMG00000001780	sf1	58	79.469	ENSPPAG00000002799	-	90	82.586	Pan_paniscus
ENSMAMG00000001780	sf1	58	77.966	ENSPPRG00000013566	SF1	57	83.934	Panthera_pardus
ENSMAMG00000001780	sf1	58	77.966	ENSPTIG00000016141	SF1	67	81.558	Panthera_tigris_altaica
ENSMAMG00000001780	sf1	60	77.934	ENSPTRG00000003846	SF1	91	80.928	Pan_troglodytes
ENSMAMG00000001780	sf1	58	77.966	ENSPANG00000020754	SF1	90	80.928	Papio_anubis
ENSMAMG00000001780	sf1	59	77.804	ENSPEMG00000010463	Sf1	66	81.347	Peromyscus_maniculatus_bairdii
ENSMAMG00000001780	sf1	59	77.751	ENSPCIG00000018173	SF1	61	81.606	Phascolarctos_cinereus
ENSMAMG00000001780	sf1	97	90.606	ENSPFOG00000013683	sf1	67	91.009	Poecilia_formosa
ENSMAMG00000001780	sf1	90	91.133	ENSPLAG00000018076	sf1	61	91.852	Poecilia_latipinna
ENSMAMG00000001780	sf1	97	90.606	ENSPMEG00000005726	sf1	67	91.009	Poecilia_mexicana
ENSMAMG00000001780	sf1	97	90.303	ENSPREG00000004155	sf1	67	90.351	Poecilia_reticulata
ENSMAMG00000001780	sf1	58	77.966	ENSPPYG00000003098	-	71	81.088	Pongo_abelii
ENSMAMG00000001780	sf1	66	70.062	ENSPCAG00000013631	SF1	75	68.544	Procavia_capensis
ENSMAMG00000001780	sf1	59	77.482	ENSPCOG00000027546	SF1	90	80.720	Propithecus_coquereli
ENSMAMG00000001780	sf1	67	93.435	ENSPNYG00000004673	sf1	67	93.421	Pundamilia_nyererei
ENSMAMG00000001780	sf1	97	84.179	ENSPNAG00000013072	sf1	97	84.179	Pygocentrus_nattereri
ENSMAMG00000001780	sf1	58	78.208	ENSRNOG00000021085	Sf1	59	81.347	Rattus_norvegicus
ENSMAMG00000001780	sf1	58	77.966	ENSRBIG00000042818	SF1	91	80.928	Rhinopithecus_bieti
ENSMAMG00000001780	sf1	59	77.566	ENSRROG00000045655	SF1	88	82.888	Rhinopithecus_roxellana
ENSMAMG00000001780	sf1	80	66.895	ENSSBOG00000022267	-	84	73.789	Saimiri_boliviensis_boliviensis
ENSMAMG00000001780	sf1	70	71.134	ENSSHAG00000006841	SF1	68	84.225	Sarcophilus_harrisii
ENSMAMG00000001780	sf1	71	80.873	ENSSFOG00015021978	sf1	66	81.838	Scleropages_formosus
ENSMAMG00000001780	sf1	84	90.361	ENSSMAG00000007549	sf1	70	92.140	Scophthalmus_maximus
ENSMAMG00000001780	sf1	94	96.562	ENSSDUG00000003903	sf1	98	96.562	Seriola_dumerili
ENSMAMG00000001780	sf1	58	73.366	ENSSARG00000008180	SF1	71	78.075	Sorex_araneus
ENSMAMG00000001780	sf1	59	79.535	ENSSPUG00000012907	SF1	58	86.761	Sphenodon_punctatus
ENSMAMG00000001780	sf1	100	94.638	ENSSPAG00000019060	sf1	100	94.638	Stegastes_partitus
ENSMAMG00000001780	sf1	58	77.966	ENSSSCG00000013021	SF1	59	81.865	Sus_scrofa
ENSMAMG00000001780	sf1	72	72.212	ENSTNIG00000004820	sf1	74	76.574	Tetraodon_nigroviridis
ENSMAMG00000001780	sf1	58	73.020	ENSTBEG00000013133	SF1	53	76.216	Tupaia_belangeri
ENSMAMG00000001780	sf1	61	76.581	ENSUMAG00000007268	SF1	69	82.632	Ursus_maritimus
ENSMAMG00000001780	sf1	85	73.299	ENSXETG00000008434	sf1	63	84.492	Xenopus_tropicalis
ENSMAMG00000001780	sf1	71	89.516	ENSXCOG00000003704	sf1	69	94.231	Xiphophorus_couchianus
ENSMAMG00000001780	sf1	97	91.212	ENSXMAG00000007822	sf1	70	91.447	Xiphophorus_maculatus