EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000003142 (Gene tree)
Gene ID: 113140788
Gene Symbol: rbfox1
Alias: a2bp1|zgc:103635
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 126317 bases
Position: chrOOHQ01000092.1:2087106-2213422
Accession: 113140788
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000004633	Fox-1_C	PF12414.8	1.9e-41	1	1
ENSMAMP00000004656	Fox-1_C	PF12414.8	4.1e-17	1	1
ENSMAMP00000004656	RRM_1	PF00076.22	2e-17	1	1
ENSMAMP00000004633	RRM_1	PF00076.22	2.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000004773	-	1791	-	ENSMAMP00000004656	290 (aa)	-	-
ENSMAMT00000004750	-	4374	XM_026324788	ENSMAMP00000004633	365 (aa)	XP_026180573	-

Gene Model

Click here to download ENSMAMG00000003142's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000003142's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000003142	rbfox1	72	60.137	ENSMAMG00000008980	-	67	58.589
ENSMAMG00000003142	rbfox1	80	56.869	ENSMAMG00000019480	rbfox1l	73	58.170
ENSMAMG00000003142	rbfox1	71	63.636	ENSMAMG00000004293	rbfox2	84	52.266
ENSMAMG00000003142	rbfox1	96	67.509	ENSMAMG00000020600	-	96	63.115
ENSMAMG00000003142	rbfox1	91	67.925	ENSMAMG00000019810	rbfox3b	99	64.110

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000003142	rbfox1	100	81.096	ENSG00000078328	RBFOX1	95	80.548	Homo_sapiens
ENSMAMG00000003142	rbfox1	100	92.098	ENSAPOG00000003197	rbfox1	95	92.371	Acanthochromis_polyacanthus
ENSMAMG00000003142	rbfox1	80	72.961	ENSAMEG00000008605	RBFOX1	87	72.103	Ailuropoda_melanoleuca
ENSMAMG00000003142	rbfox1	70	82.759	ENSACIG00000005478	rbfox1	68	75.465	Amphilophus_citrinellus
ENSMAMG00000003142	rbfox1	100	90.068	ENSAOCG00000008283	rbfox1	100	90.411	Amphiprion_ocellaris
ENSMAMG00000003142	rbfox1	100	71.916	ENSAPEG00000010636	rbfox1	100	73.753	Amphiprion_percula
ENSMAMG00000003142	rbfox1	100	88.435	ENSATEG00000007513	rbfox1	100	87.415	Anabas_testudineus
ENSMAMG00000003142	rbfox1	100	75.255	ENSAPLG00000013263	RBFOX1	94	74.745	Anas_platyrhynchos
ENSMAMG00000003142	rbfox1	100	72.152	ENSACAG00000004013	RBFOX1	95	72.152	Anolis_carolinensis
ENSMAMG00000003142	rbfox1	100	81.644	ENSANAG00000029527	RBFOX1	93	81.096	Aotus_nancymaae
ENSMAMG00000003142	rbfox1	81	73.191	ENSAMXG00000002431	rbfox1	64	73.305	Astyanax_mexicanus
ENSMAMG00000003142	rbfox1	100	73.282	ENSBTAG00000007210	RBFOX1	95	72.774	Bos_taurus
ENSMAMG00000003142	rbfox1	100	79.781	ENSCJAG00000017351	RBFOX1	90	79.235	Callithrix_jacchus
ENSMAMG00000003142	rbfox1	100	73.791	ENSCAFG00000019082	RBFOX1	90	73.282	Canis_familiaris
ENSMAMG00000003142	rbfox1	89	68.662	ENSCAFG00020024881	RBFOX1	75	67.958	Canis_lupus_dingo
ENSMAMG00000003142	rbfox1	100	73.028	ENSCHIG00000023549	RBFOX1	95	72.519	Capra_hircus
ENSMAMG00000003142	rbfox1	100	81.370	ENSTSYG00000005334	RBFOX1	97	80.822	Carlito_syrichta
ENSMAMG00000003142	rbfox1	100	75.510	ENSCAPG00000017669	RBFOX1	97	75.000	Cavia_aperea
ENSMAMG00000003142	rbfox1	100	75.510	ENSCPOG00000011314	RBFOX1	96	75.000	Cavia_porcellus
ENSMAMG00000003142	rbfox1	100	81.644	ENSCCAG00000023031	RBFOX1	93	81.096	Cebus_capucinus
ENSMAMG00000003142	rbfox1	100	81.096	ENSCATG00000033816	RBFOX1	93	80.548	Cercocebus_atys
ENSMAMG00000003142	rbfox1	100	75.255	ENSCLAG00000012761	RBFOX1	95	74.745	Chinchilla_lanigera
ENSMAMG00000003142	rbfox1	99	69.206	ENSCSAG00000008739	RBFOX1	85	71.257	Chlorocebus_sabaeus
ENSMAMG00000003142	rbfox1	73	86.154	ENSCHOG00000012843	RBFOX1	60	86.154	Choloepus_hoffmanni
ENSMAMG00000003142	rbfox1	100	81.096	ENSCPBG00000026626	RBFOX1	95	72.774	Chrysemys_picta_bellii
ENSMAMG00000003142	rbfox1	100	81.096	ENSCANG00000033125	RBFOX1	93	80.548	Colobus_angolensis_palliatus
ENSMAMG00000003142	rbfox1	100	74.745	ENSCGRG00001013729	Rbfox1	95	74.235	Cricetulus_griseus_chok1gshd
ENSMAMG00000003142	rbfox1	100	74.745	ENSCGRG00000003272	Rbfox1	95	74.235	Cricetulus_griseus_crigri
ENSMAMG00000003142	rbfox1	100	82.162	ENSCSEG00000008840	rbfox1	100	80.270	Cynoglossus_semilaevis
ENSMAMG00000003142	rbfox1	100	80.874	ENSDARG00000014746	rbfox1	95	81.148	Danio_rerio
ENSMAMG00000003142	rbfox1	100	75.255	ENSDNOG00000043612	RBFOX1	91	74.745	Dasypus_novemcinctus
ENSMAMG00000003142	rbfox1	100	73.724	ENSDORG00000010024	Rbfox1	94	74.490	Dipodomys_ordii
ENSMAMG00000003142	rbfox1	100	62.087	ENSETEG00000003771	RBFOX1	90	61.578	Echinops_telfairi
ENSMAMG00000003142	rbfox1	100	75.765	ENSEASG00005011599	RBFOX1	95	73.282	Equus_asinus_asinus
ENSMAMG00000003142	rbfox1	100	74.933	ENSECAG00000012667	RBFOX1	88	72.632	Equus_caballus
ENSMAMG00000003142	rbfox1	59	74.299	ENSELUG00000013096	rbfox1	66	80.198	Esox_lucius
ENSMAMG00000003142	rbfox1	100	81.370	ENSFCAG00000025322	RBFOX1	86	80.822	Felis_catus
ENSMAMG00000003142	rbfox1	96	69.836	ENSFALG00000004027	RBFOX1	93	71.779	Ficedula_albicollis
ENSMAMG00000003142	rbfox1	100	75.510	ENSFDAG00000007388	RBFOX1	95	75.000	Fukomys_damarensis
ENSMAMG00000003142	rbfox1	97	76.429	ENSGALG00000034325	RBFOX1	90	72.010	Gallus_gallus
ENSMAMG00000003142	rbfox1	100	78.689	ENSGAGG00000023681	RBFOX1	100	74.490	Gopherus_agassizii
ENSMAMG00000003142	rbfox1	100	81.096	ENSGGOG00000016871	-	93	80.548	Gorilla_gorilla
ENSMAMG00000003142	rbfox1	100	75.510	ENSHGLG00000016944	RBFOX1	95	75.000	Heterocephalus_glaber_female
ENSMAMG00000003142	rbfox1	100	75.510	ENSHGLG00100003272	RBFOX1	95	75.000	Heterocephalus_glaber_male
ENSMAMG00000003142	rbfox1	87	82.812	ENSHCOG00000016419	rbfox1	91	78.852	Hippocampus_comes
ENSMAMG00000003142	rbfox1	100	79.726	ENSIPUG00000015215	rbfox1	100	80.274	Ictalurus_punctatus
ENSMAMG00000003142	rbfox1	100	75.765	ENSSTOG00000000322	RBFOX1	96	75.255	Ictidomys_tridecemlineatus
ENSMAMG00000003142	rbfox1	100	74.235	ENSJJAG00000002575	Rbfox1	95	72.959	Jaculus_jaculus
ENSMAMG00000003142	rbfox1	97	88.169	ENSLBEG00000014659	rbfox1	93	88.669	Labrus_bergylta
ENSMAMG00000003142	rbfox1	100	75.443	ENSLOCG00000006675	rbfox1	95	74.937	Lepisosteus_oculatus
ENSMAMG00000003142	rbfox1	77	80.906	ENSLAFG00000011480	RBFOX1	100	80.906	Loxodonta_africana
ENSMAMG00000003142	rbfox1	100	81.096	ENSMFAG00000036447	RBFOX1	93	80.548	Macaca_fascicularis
ENSMAMG00000003142	rbfox1	100	81.096	ENSMMUG00000003458	RBFOX1	93	80.548	Macaca_mulatta
ENSMAMG00000003142	rbfox1	99	76.042	ENSMNEG00000032034	RBFOX1	90	72.774	Macaca_nemestrina
ENSMAMG00000003142	rbfox1	100	81.096	ENSMLEG00000015382	RBFOX1	93	80.548	Mandrillus_leucophaeus
ENSMAMG00000003142	rbfox1	97	69.055	ENSMGAG00000008606	RBFOX1	98	68.212	Meleagris_gallopavo
ENSMAMG00000003142	rbfox1	100	43.421	ENSMAUG00000020570	Rbfox1	94	41.775	Mesocricetus_auratus
ENSMAMG00000003142	rbfox1	100	80.822	ENSMICG00000034286	RBFOX1	93	80.274	Microcebus_murinus
ENSMAMG00000003142	rbfox1	100	75.000	ENSMOCG00000020932	Rbfox1	98	74.490	Microtus_ochrogaster
ENSMAMG00000003142	rbfox1	90	83.908	ENSMMOG00000009716	rbfox1	86	79.077	Mola_mola
ENSMAMG00000003142	rbfox1	91	70.890	ENSMODG00000005826	RBFOX1	90	70.958	Monodelphis_domestica
ENSMAMG00000003142	rbfox1	100	89.589	ENSMALG00000003337	rbfox1	94	88.219	Monopterus_albus
ENSMAMG00000003142	rbfox1	100	75.000	MGP_CAROLIEiJ_G0020427	Rbfox1	95	74.490	Mus_caroli
ENSMAMG00000003142	rbfox1	100	76.738	ENSMUSG00000008658	Rbfox1	98	83.206	Mus_musculus
ENSMAMG00000003142	rbfox1	100	75.000	MGP_PahariEiJ_G0016135	Rbfox1	95	74.490	Mus_pahari
ENSMAMG00000003142	rbfox1	100	75.000	MGP_SPRETEiJ_G0021321	Rbfox1	95	74.490	Mus_spretus
ENSMAMG00000003142	rbfox1	96	69.836	ENSMPUG00000014822	RBFOX1	81	70.958	Mustela_putorius_furo
ENSMAMG00000003142	rbfox1	77	81.169	ENSMLUG00000015896	RBFOX1	100	81.169	Myotis_lucifugus
ENSMAMG00000003142	rbfox1	100	75.255	ENSNGAG00000023276	Rbfox1	97	74.745	Nannospalax_galili
ENSMAMG00000003142	rbfox1	100	68.462	ENSNBRG00000011084	rbfox1	91	66.923	Neolamprologus_brichardi
ENSMAMG00000003142	rbfox1	100	80.822	ENSNLEG00000010017	-	93	80.274	Nomascus_leucogenys
ENSMAMG00000003142	rbfox1	78	89.231	ENSMEUG00000012525	RBFOX1	65	89.231	Notamacropus_eugenii
ENSMAMG00000003142	rbfox1	88	75.455	ENSOPRG00000006199	-	73	74.545	Ochotona_princeps
ENSMAMG00000003142	rbfox1	100	75.765	ENSODEG00000013166	RBFOX1	95	75.255	Octodon_degus
ENSMAMG00000003142	rbfox1	99	68.254	ENSOANG00000002379	RBFOX1	85	70.359	Ornithorhynchus_anatinus
ENSMAMG00000003142	rbfox1	82	73.750	ENSOCUG00000001205	-	99	73.750	Oryctolagus_cuniculus
ENSMAMG00000003142	rbfox1	100	75.255	ENSOGAG00000025535	RBFOX1	95	74.745	Otolemur_garnettii
ENSMAMG00000003142	rbfox1	80	63.948	ENSOARG00000005135	RBFOX1	85	62.661	Ovis_aries
ENSMAMG00000003142	rbfox1	100	81.096	ENSPPAG00000036238	-	97	80.548	Pan_paniscus
ENSMAMG00000003142	rbfox1	100	81.370	ENSPPRG00000006546	RBFOX1	93	80.822	Panthera_pardus
ENSMAMG00000003142	rbfox1	100	69.067	ENSPTIG00000021154	RBFOX1	96	68.733	Panthera_tigris_altaica
ENSMAMG00000003142	rbfox1	100	81.096	ENSPTRG00000007744	RBFOX1	93	80.548	Pan_troglodytes
ENSMAMG00000003142	rbfox1	100	81.096	ENSPANG00000026500	RBFOX1	93	80.548	Papio_anubis
ENSMAMG00000003142	rbfox1	99	76.736	ENSPKIG00000019353	rbfox1	87	76.042	Paramormyrops_kingsleyae
ENSMAMG00000003142	rbfox1	100	79.452	ENSPKIG00000009667	-	95	78.814	Paramormyrops_kingsleyae
ENSMAMG00000003142	rbfox1	100	75.255	ENSPSIG00000006523	RBFOX1	94	74.745	Pelodiscus_sinensis
ENSMAMG00000003142	rbfox1	100	75.000	ENSPEMG00000017607	Rbfox1	95	74.490	Peromyscus_maniculatus_bairdii
ENSMAMG00000003142	rbfox1	72	76.552	ENSPCIG00000026887	RBFOX1	100	76.552	Phascolarctos_cinereus
ENSMAMG00000003142	rbfox1	96	69.836	ENSPPYG00000007079	-	81	71.257	Pongo_abelii
ENSMAMG00000003142	rbfox1	96	63.607	ENSPCAG00000002630	RBFOX1	89	65.439	Procavia_capensis
ENSMAMG00000003142	rbfox1	100	81.096	ENSPCOG00000025687	RBFOX1	93	80.548	Propithecus_coquereli
ENSMAMG00000003142	rbfox1	100	69.975	ENSPVAG00000013467	RBFOX1	90	69.466	Pteropus_vampyrus
ENSMAMG00000003142	rbfox1	100	77.344	ENSPNAG00000023109	rbfox1	100	77.604	Pygocentrus_nattereri
ENSMAMG00000003142	rbfox1	100	74.745	ENSRNOG00000002827	Rbfox1	90	74.235	Rattus_norvegicus
ENSMAMG00000003142	rbfox1	100	81.096	ENSRBIG00000044478	RBFOX1	97	80.548	Rhinopithecus_bieti
ENSMAMG00000003142	rbfox1	100	81.096	ENSRROG00000044411	RBFOX1	93	80.548	Rhinopithecus_roxellana
ENSMAMG00000003142	rbfox1	100	81.644	ENSSBOG00000033726	RBFOX1	93	81.096	Saimiri_boliviensis_boliviensis
ENSMAMG00000003142	rbfox1	100	75.510	ENSSHAG00000009257	RBFOX1	95	75.000	Sarcophilus_harrisii
ENSMAMG00000003142	rbfox1	92	70.149	ENSSFOG00015009955	-	80	70.213	Scleropages_formosus
ENSMAMG00000003142	rbfox1	100	68.219	ENSSFOG00015023675	rbfox1	94	67.671	Scleropages_formosus
ENSMAMG00000003142	rbfox1	100	90.984	ENSSMAG00000015505	rbfox1	91	89.571	Scophthalmus_maximus
ENSMAMG00000003142	rbfox1	99	87.543	ENSSDUG00000016413	rbfox1	94	84.741	Seriola_dumerili
ENSMAMG00000003142	rbfox1	97	90.071	ENSSLDG00000009353	rbfox1	89	91.786	Seriola_lalandi_dorsalis
ENSMAMG00000003142	rbfox1	87	77.647	ENSSPUG00000009732	RBFOX1	87	74.085	Sphenodon_punctatus
ENSMAMG00000003142	rbfox1	100	91.281	ENSSPAG00000009723	rbfox1	97	91.553	Stegastes_partitus
ENSMAMG00000003142	rbfox1	96	74.406	ENSSSCG00000007917	RBFOX1	88	73.879	Sus_scrofa
ENSMAMG00000003142	rbfox1	100	75.255	ENSTGUG00000004562	RBFOX1	97	74.745	Taeniopygia_guttata
ENSMAMG00000003142	rbfox1	100	89.041	ENSTRUG00000020940	rbfox1	96	87.945	Takifugu_rubripes
ENSMAMG00000003142	rbfox1	62	77.348	ENSTNIG00000002567	rbfox1	100	66.551	Tetraodon_nigroviridis
ENSMAMG00000003142	rbfox1	65	89.706	ENSTBEG00000009169	-	56	89.706	Tupaia_belangeri
ENSMAMG00000003142	rbfox1	100	73.282	ENSTTRG00000005700	RBFOX1	90	72.774	Tursiops_truncatus
ENSMAMG00000003142	rbfox1	100	71.658	ENSUAMG00000024633	RBFOX1	100	71.390	Ursus_americanus
ENSMAMG00000003142	rbfox1	100	68.108	ENSUMAG00000003579	RBFOX1	95	67.671	Ursus_maritimus
ENSMAMG00000003142	rbfox1	77	78.317	ENSVPAG00000001284	RBFOX1	74	78.317	Vicugna_pacos
ENSMAMG00000003142	rbfox1	100	81.370	ENSVVUG00000017311	RBFOX1	86	80.822	Vulpes_vulpes