EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000003803 (Gene tree)
Gene ID: 113126591
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12338 bases
Position: chrOOHQ01000103.1:5498490-5510827
Accession: 113126591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000005790	CPSF_A	PF03178.15	1.4e-92	1	1
ENSMAMP00000005733	CPSF_A	PF03178.15	7.9e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000005891	-	5200	-	ENSMAMP00000005733	1432 (aa)	-	-
ENSMAMT00000005951	-	4679	XM_026300685	ENSMAMP00000005790	1472 (aa)	XP_026156470	UPI000E4567BE

Gene Model

Click here to download ENSMAMG00000003803's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000003803's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000003803	cpsf1	100	78.176	ENSG00000071894	CPSF1	100	80.093	Homo_sapiens
ENSMAMG00000003803	cpsf1	100	95.177	ENSAPOG00000019621	cpsf1	100	95.177	Acanthochromis_polyacanthus
ENSMAMG00000003803	cpsf1	99	77.159	ENSAMEG00000005557	CPSF1	98	77.456	Ailuropoda_melanoleuca
ENSMAMG00000003803	cpsf1	100	89.438	ENSACIG00000006112	cpsf1	100	89.980	Amphilophus_citrinellus
ENSMAMG00000003803	cpsf1	100	91.222	ENSAOCG00000007120	cpsf1	100	91.020	Amphiprion_ocellaris
ENSMAMG00000003803	cpsf1	100	92.302	ENSAPEG00000005755	cpsf1	100	91.897	Amphiprion_percula
ENSMAMG00000003803	cpsf1	100	94.573	ENSATEG00000011097	cpsf1	100	94.980	Anabas_testudineus
ENSMAMG00000003803	cpsf1	93	74.093	ENSACAG00000009655	CPSF1	100	73.822	Anolis_carolinensis
ENSMAMG00000003803	cpsf1	100	78.243	ENSANAG00000036514	CPSF1	100	78.378	Aotus_nancymaae
ENSMAMG00000003803	cpsf1	99	94.106	ENSACLG00000012231	cpsf1	99	94.034	Astatotilapia_calliptera
ENSMAMG00000003803	cpsf1	100	78.933	ENSAMXG00000008485	cpsf1	100	78.123	Astyanax_mexicanus
ENSMAMG00000003803	cpsf1	100	77.240	ENSBTAG00000008355	CPSF1	100	78.050	Bos_taurus
ENSMAMG00000003803	cpsf1	100	32.711	WBGene00022301	cpsf-1	99	40.960	Caenorhabditis_elegans
ENSMAMG00000003803	cpsf1	100	78.446	ENSCJAG00000021421	CPSF1	100	78.311	Callithrix_jacchus
ENSMAMG00000003803	cpsf1	99	78.606	ENSCAFG00000001600	CPSF1	100	77.700	Canis_familiaris
ENSMAMG00000003803	cpsf1	100	78.273	ENSCAFG00020020821	CPSF1	100	77.845	Canis_lupus_dingo
ENSMAMG00000003803	cpsf1	100	74.731	ENSCHIG00000015833	CPSF1	100	74.459	Capra_hircus
ENSMAMG00000003803	cpsf1	100	78.784	ENSTSYG00000028560	CPSF1	100	81.019	Carlito_syrichta
ENSMAMG00000003803	cpsf1	99	77.809	ENSCAPG00000014921	CPSF1	98	78.218	Cavia_aperea
ENSMAMG00000003803	cpsf1	100	77.230	ENSCPOG00000011448	CPSF1	100	77.095	Cavia_porcellus
ENSMAMG00000003803	cpsf1	100	78.663	ENSCCAG00000037658	CPSF1	100	80.275	Cebus_capucinus
ENSMAMG00000003803	cpsf1	100	78.176	ENSCATG00000037234	CPSF1	100	80.093	Cercocebus_atys
ENSMAMG00000003803	cpsf1	100	78.702	ENSCLAG00000012166	CPSF1	100	78.567	Chinchilla_lanigera
ENSMAMG00000003803	cpsf1	100	78.514	ENSCSAG00000008502	CPSF1	100	78.378	Chlorocebus_sabaeus
ENSMAMG00000003803	cpsf1	99	79.932	ENSCPBG00000018910	CPSF1	96	80.068	Chrysemys_picta_bellii
ENSMAMG00000003803	cpsf1	96	47.978	ENSCING00000000514	-	100	47.841	Ciona_intestinalis
ENSMAMG00000003803	cpsf1	99	48.552	ENSCSAVG00000002293	-	99	51.163	Ciona_savignyi
ENSMAMG00000003803	cpsf1	99	76.590	ENSCANG00000032760	CPSF1	100	80.556	Colobus_angolensis_palliatus
ENSMAMG00000003803	cpsf1	100	78.567	ENSCGRG00001016344	Cpsf1	100	78.296	Cricetulus_griseus_chok1gshd
ENSMAMG00000003803	cpsf1	100	76.876	ENSCGRG00000003118	Cpsf1	100	76.606	Cricetulus_griseus_crigri
ENSMAMG00000003803	cpsf1	100	87.068	ENSCSEG00000013464	cpsf1	99	90.372	Cynoglossus_semilaevis
ENSMAMG00000003803	cpsf1	88	86.626	ENSCVAG00000014059	cpsf1	100	82.407	Cyprinodon_variegatus
ENSMAMG00000003803	cpsf1	100	86.554	ENSDARG00000034178	cpsf1	100	86.486	Danio_rerio
ENSMAMG00000003803	cpsf1	57	83.237	ENSDNOG00000043654	CPSF1	94	82.948	Dasypus_novemcinctus
ENSMAMG00000003803	cpsf1	99	78.352	ENSDORG00000006278	Cpsf1	99	78.179	Dipodomys_ordii
ENSMAMG00000003803	cpsf1	100	44.583	FBgn0024698	Cpsf160	100	44.415	Drosophila_melanogaster
ENSMAMG00000003803	cpsf1	81	85.235	ENSETEG00000006022	CPSF1	83	85.235	Echinops_telfairi
ENSMAMG00000003803	cpsf1	100	78.408	ENSEASG00005010774	CPSF1	100	77.935	Equus_asinus_asinus
ENSMAMG00000003803	cpsf1	100	78.273	ENSECAG00000022209	CPSF1	100	77.800	Equus_caballus
ENSMAMG00000003803	cpsf1	99	79.521	ENSEEUG00000000471	CPSF1	100	78.152	Erinaceus_europaeus
ENSMAMG00000003803	cpsf1	100	86.425	ENSELUG00000012271	cpsf1	100	86.280	Esox_lucius
ENSMAMG00000003803	cpsf1	100	78.702	ENSFDAG00000016060	CPSF1	100	78.634	Fukomys_damarensis
ENSMAMG00000003803	cpsf1	100	87.449	ENSFHEG00000016801	cpsf1	100	87.390	Fundulus_heteroclitus
ENSMAMG00000003803	cpsf1	100	86.226	ENSGMOG00000000796	cpsf1	100	86.563	Gadus_morhua
ENSMAMG00000003803	cpsf1	96	91.071	ENSGAFG00000018890	cpsf1	100	91.071	Gambusia_affinis
ENSMAMG00000003803	cpsf1	100	89.602	ENSGACG00000008703	cpsf1	100	89.534	Gasterosteus_aculeatus
ENSMAMG00000003803	cpsf1	100	77.208	ENSGAGG00000004276	CPSF1	98	80.456	Gopherus_agassizii
ENSMAMG00000003803	cpsf1	100	78.161	ENSGGOG00000016185	CPSF1	100	80.093	Gorilla_gorilla
ENSMAMG00000003803	cpsf1	100	91.848	ENSHBUG00000018900	cpsf1	100	91.712	Haplochromis_burtoni
ENSMAMG00000003803	cpsf1	100	78.769	ENSHGLG00000016139	CPSF1	100	78.634	Heterocephalus_glaber_female
ENSMAMG00000003803	cpsf1	100	78.702	ENSHGLG00100009750	CPSF1	100	78.567	Heterocephalus_glaber_male
ENSMAMG00000003803	cpsf1	100	89.538	ENSHCOG00000018509	cpsf1	100	89.606	Hippocampus_comes
ENSMAMG00000003803	cpsf1	100	82.647	ENSIPUG00000011259	cpsf1	100	82.186	Ictalurus_punctatus
ENSMAMG00000003803	cpsf1	100	78.116	ENSSTOG00000009957	CPSF1	98	78.647	Ictidomys_tridecemlineatus
ENSMAMG00000003803	cpsf1	100	78.769	ENSJJAG00000023002	Cpsf1	100	78.567	Jaculus_jaculus
ENSMAMG00000003803	cpsf1	91	94.984	ENSKMAG00000001940	cpsf1	99	94.984	Kryptolebias_marmoratus
ENSMAMG00000003803	cpsf1	100	92.799	ENSLBEG00000003601	cpsf1	100	93.071	Labrus_bergylta
ENSMAMG00000003803	cpsf1	87	79.306	ENSLACG00000000233	CPSF1	92	79.187	Latimeria_chalumnae
ENSMAMG00000003803	cpsf1	100	81.726	ENSLOCG00000008484	cpsf1	100	82.333	Lepisosteus_oculatus
ENSMAMG00000003803	cpsf1	99	78.676	ENSLAFG00000022601	CPSF1	98	79.066	Loxodonta_africana
ENSMAMG00000003803	cpsf1	100	78.311	ENSMFAG00000037013	CPSF1	100	80.093	Macaca_fascicularis
ENSMAMG00000003803	cpsf1	100	78.311	ENSMMUG00000007380	CPSF1	98	82.109	Macaca_mulatta
ENSMAMG00000003803	cpsf1	99	78.811	ENSMNEG00000043564	CPSF1	100	80.093	Macaca_nemestrina
ENSMAMG00000003803	cpsf1	100	78.311	ENSMLEG00000043010	CPSF1	100	80.093	Mandrillus_leucophaeus
ENSMAMG00000003803	cpsf1	100	88.451	ENSMZEG00005001168	cpsf1	100	88.315	Maylandia_zebra
ENSMAMG00000003803	cpsf1	100	78.567	ENSMAUG00000003601	Cpsf1	100	78.567	Mesocricetus_auratus
ENSMAMG00000003803	cpsf1	100	78.499	ENSMICG00000015767	CPSF1	100	78.161	Microcebus_murinus
ENSMAMG00000003803	cpsf1	100	78.296	ENSMOCG00000022758	Cpsf1	100	78.093	Microtus_ochrogaster
ENSMAMG00000003803	cpsf1	100	90.940	ENSMMOG00000021245	cpsf1	100	90.399	Mola_mola
ENSMAMG00000003803	cpsf1	100	79.150	ENSMODG00000010755	CPSF1	100	78.947	Monodelphis_domestica
ENSMAMG00000003803	cpsf1	100	94.905	ENSMALG00000020545	cpsf1	100	95.177	Monopterus_albus
ENSMAMG00000003803	cpsf1	100	78.769	MGP_CAROLIEiJ_G0019936	Cpsf1	100	78.567	Mus_caroli
ENSMAMG00000003803	cpsf1	100	78.769	ENSMUSG00000034022	Cpsf1	100	78.567	Mus_musculus
ENSMAMG00000003803	cpsf1	100	78.837	MGP_PahariEiJ_G0019946	Cpsf1	100	78.634	Mus_pahari
ENSMAMG00000003803	cpsf1	100	78.837	MGP_SPRETEiJ_G0020839	Cpsf1	100	78.634	Mus_spretus
ENSMAMG00000003803	cpsf1	96	78.947	ENSMPUG00000006419	CPSF1	93	78.947	Mustela_putorius_furo
ENSMAMG00000003803	cpsf1	100	78.499	ENSNGAG00000022460	Cpsf1	100	78.296	Nannospalax_galili
ENSMAMG00000003803	cpsf1	100	85.569	ENSNBRG00000000813	cpsf1	97	91.279	Neolamprologus_brichardi
ENSMAMG00000003803	cpsf1	86	69.369	ENSNLEG00000010633	-	100	80.093	Nomascus_leucogenys
ENSMAMG00000003803	cpsf1	85	87.209	ENSMEUG00000014922	CPSF1	84	87.209	Notamacropus_eugenii
ENSMAMG00000003803	cpsf1	63	90.000	ENSOPRG00000004693	-	70	90.000	Ochotona_princeps
ENSMAMG00000003803	cpsf1	100	78.769	ENSODEG00000013995	CPSF1	100	78.769	Octodon_degus
ENSMAMG00000003803	cpsf1	100	92.022	ENSONIG00000007676	cpsf1	100	91.886	Oreochromis_niloticus
ENSMAMG00000003803	cpsf1	61	78.571	ENSOANG00000010716	CPSF1	89	78.571	Ornithorhynchus_anatinus
ENSMAMG00000003803	cpsf1	100	90.761	ENSORLG00000013544	cpsf1	100	90.761	Oryzias_latipes
ENSMAMG00000003803	cpsf1	100	90.761	ENSORLG00020021693	cpsf1	100	90.761	Oryzias_latipes_hni
ENSMAMG00000003803	cpsf1	100	90.761	ENSORLG00015009979	cpsf1	100	90.761	Oryzias_latipes_hsok
ENSMAMG00000003803	cpsf1	100	90.767	ENSOMEG00000011849	cpsf1	100	90.570	Oryzias_melastigma
ENSMAMG00000003803	cpsf1	100	78.851	ENSOGAG00000000315	CPSF1	100	78.716	Otolemur_garnettii
ENSMAMG00000003803	cpsf1	100	78.176	ENSPPAG00000019280	CPSF1	100	81.448	Pan_paniscus
ENSMAMG00000003803	cpsf1	100	76.877	ENSPTRG00000051253	-	100	81.448	Pan_troglodytes
ENSMAMG00000003803	cpsf1	100	78.176	ENSPTRG00000049288	-	100	81.448	Pan_troglodytes
ENSMAMG00000003803	cpsf1	99	78.811	ENSPANG00000015005	CPSF1	100	80.093	Papio_anubis
ENSMAMG00000003803	cpsf1	100	85.608	ENSPKIG00000002582	cpsf1	100	85.830	Paramormyrops_kingsleyae
ENSMAMG00000003803	cpsf1	100	79.285	ENSPCIG00000009035	CPSF1	100	79.082	Phascolarctos_cinereus
ENSMAMG00000003803	cpsf1	100	90.897	ENSPFOG00000012870	cpsf1	100	90.285	Poecilia_formosa
ENSMAMG00000003803	cpsf1	100	90.761	ENSPREG00000016307	cpsf1	100	90.353	Poecilia_reticulata
ENSMAMG00000003803	cpsf1	100	71.438	ENSPPYG00000018973	CPSF1	100	71.236	Pongo_abelii
ENSMAMG00000003803	cpsf1	94	85.511	ENSPCAG00000011541	CPSF1	93	85.511	Procavia_capensis
ENSMAMG00000003803	cpsf1	100	75.203	ENSPCOG00000020001	CPSF1	100	80.093	Propithecus_coquereli
ENSMAMG00000003803	cpsf1	91	88.857	ENSPVAG00000006761	CPSF1	91	88.857	Pteropus_vampyrus
ENSMAMG00000003803	cpsf1	100	94.365	ENSPNYG00000004906	cpsf1	100	94.162	Pundamilia_nyererei
ENSMAMG00000003803	cpsf1	100	81.449	ENSPNAG00000024395	cpsf1	100	81.246	Pygocentrus_nattereri
ENSMAMG00000003803	cpsf1	100	78.741	ENSRNOG00000030705	Cpsf1	100	78.538	Rattus_norvegicus
ENSMAMG00000003803	cpsf1	100	78.243	ENSRBIG00000044907	CPSF1	100	80.556	Rhinopithecus_bieti
ENSMAMG00000003803	cpsf1	100	78.311	ENSRROG00000044861	CPSF1	100	80.556	Rhinopithecus_roxellana
ENSMAMG00000003803	cpsf1	99	78.741	ENSSBOG00000027177	CPSF1	99	78.940	Saimiri_boliviensis_boliviensis
ENSMAMG00000003803	cpsf1	100	79.217	ENSSHAG00000006500	CPSF1	100	79.015	Sarcophilus_harrisii
ENSMAMG00000003803	cpsf1	100	83.795	ENSSFOG00015004606	cpsf1	100	86.558	Scleropages_formosus
ENSMAMG00000003803	cpsf1	100	93.279	ENSSMAG00000020547	cpsf1	100	93.279	Scophthalmus_maximus
ENSMAMG00000003803	cpsf1	100	92.668	ENSSDUG00000001100	cpsf1	100	92.668	Seriola_dumerili
ENSMAMG00000003803	cpsf1	100	92.600	ENSSLDG00000003619	cpsf1	100	91.989	Seriola_lalandi_dorsalis
ENSMAMG00000003803	cpsf1	89	75.294	ENSSARG00000003643	CPSF1	92	74.980	Sorex_araneus
ENSMAMG00000003803	cpsf1	99	80.969	ENSSPUG00000014396	CPSF1	99	80.818	Sphenodon_punctatus
ENSMAMG00000003803	cpsf1	100	95.448	ENSSPAG00000005349	cpsf1	100	95.312	Stegastes_partitus
ENSMAMG00000003803	cpsf1	100	77.665	ENSSSCG00000005906	CPSF1	100	77.297	Sus_scrofa
ENSMAMG00000003803	cpsf1	99	90.992	ENSTRUG00000013134	cpsf1	99	91.147	Takifugu_rubripes
ENSMAMG00000003803	cpsf1	100	88.964	ENSTNIG00000014027	cpsf1	100	88.964	Tetraodon_nigroviridis
ENSMAMG00000003803	cpsf1	77	74.870	ENSTBEG00000001756	CPSF1	89	75.725	Tupaia_belangeri
ENSMAMG00000003803	cpsf1	90	84.655	ENSTTRG00000001937	CPSF1	90	84.483	Tursiops_truncatus
ENSMAMG00000003803	cpsf1	99	78.885	ENSUAMG00000006476	CPSF1	97	79.279	Ursus_americanus
ENSMAMG00000003803	cpsf1	100	87.772	ENSXCOG00000003608	cpsf1	100	87.636	Xiphophorus_couchianus
ENSMAMG00000003803	cpsf1	100	87.033	ENSXMAG00000005798	cpsf1	100	86.897	Xiphophorus_maculatus