EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000003949 (Gene tree)
Gene ID: 113136537
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12744 bases
Position: chrOOHQ01000011.1:4055122-4067865
Accession: 113136537
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000006031	tRNA-synt_1g	PF09334.11	6.7e-13	1	1
ENSMAMP00000005953	tRNA-synt_1g	PF09334.11	7.3e-13	1	1
ENSMAMP00000005988	tRNA-synt_1g	PF09334.11	7.6e-13	1	1
ENSMAMP00000005988	Anticodon_1	PF08264.13	7.4e-35	1	1
ENSMAMP00000005953	Anticodon_1	PF08264.13	8.1e-35	1	1
ENSMAMP00000006031	Anticodon_1	PF08264.13	1.4e-26	1	1
ENSMAMP00000005988	tRNA-synt_1	PF00133.22	3.9e-208	1	1
ENSMAMP00000005953	tRNA-synt_1	PF00133.22	3.9e-208	1	1
ENSMAMP00000006031	tRNA-synt_1	PF00133.22	1.2e-206	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000006122	-	6959	-	ENSMAMP00000005953	1270 (aa)	XP_026173221	UPI000E460FDD
ENSMAMT00000006160	-	4030	-	ENSMAMP00000005988	1283 (aa)	-	-
ENSMAMT00000006203	-	3654	-	ENSMAMP00000006031	1217 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000003949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000003949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000003949	vars	80	47.642	ENSMAMG00000020339	vars2	98	44.911

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000003949	vars	100	64.665	ENSG00000204394	VARS	99	71.779	Homo_sapiens
ENSMAMG00000003949	vars	98	88.593	ENSAPOG00000020691	vars	99	88.593	Acanthochromis_polyacanthus
ENSMAMG00000003949	vars	98	88.593	ENSAPOG00000020921	vars	99	88.593	Acanthochromis_polyacanthus
ENSMAMG00000003949	vars	100	65.160	ENSAMEG00000006417	VARS	100	64.984	Ailuropoda_melanoleuca
ENSMAMG00000003949	vars	100	89.945	ENSACIG00000013752	vars	100	89.945	Amphilophus_citrinellus
ENSMAMG00000003949	vars	100	91.981	ENSAOCG00000002447	vars	99	91.981	Amphiprion_ocellaris
ENSMAMG00000003949	vars	100	92.060	ENSAPEG00000010638	vars	99	92.060	Amphiprion_percula
ENSMAMG00000003949	vars	100	88.763	ENSATEG00000020219	vars	100	88.763	Anabas_testudineus
ENSMAMG00000003949	vars	90	71.799	ENSACAG00000029133	-	99	71.515	Anolis_carolinensis
ENSMAMG00000003949	vars	100	64.536	ENSANAG00000015453	VARS	100	64.413	Aotus_nancymaae
ENSMAMG00000003949	vars	100	90.831	ENSACLG00000025699	vars	97	90.831	Astatotilapia_calliptera
ENSMAMG00000003949	vars	96	81.926	ENSAMXG00000017716	vars	96	82.010	Astyanax_mexicanus
ENSMAMG00000003949	vars	100	64.353	ENSBTAG00000005631	VARS	100	64.491	Bos_taurus
ENSMAMG00000003949	vars	100	64.431	ENSCJAG00000002604	VARS	100	64.180	Callithrix_jacchus
ENSMAMG00000003949	vars	100	64.486	ENSCAFG00000000636	VARS	100	64.391	Canis_familiaris
ENSMAMG00000003949	vars	94	65.615	ENSCAFG00020020790	VARS	96	65.509	Canis_lupus_dingo
ENSMAMG00000003949	vars	100	64.380	ENSCHIG00000011008	VARS	100	64.519	Capra_hircus
ENSMAMG00000003949	vars	100	64.536	ENSTSYG00000001567	VARS	100	64.336	Carlito_syrichta
ENSMAMG00000003949	vars	90	68.842	ENSCAPG00000013736	VARS	97	68.352	Cavia_aperea
ENSMAMG00000003949	vars	100	65.031	ENSCPOG00000000870	VARS	100	64.509	Cavia_porcellus
ENSMAMG00000003949	vars	100	64.743	ENSCCAG00000035656	VARS	100	64.376	Cebus_capucinus
ENSMAMG00000003949	vars	100	65.055	ENSCATG00000022394	VARS	100	64.724	Cercocebus_atys
ENSMAMG00000003949	vars	90	65.228	ENSCLAG00000009470	VARS	93	64.915	Chinchilla_lanigera
ENSMAMG00000003949	vars	100	64.899	ENSCSAG00000008784	VARS	100	64.491	Chlorocebus_sabaeus
ENSMAMG00000003949	vars	79	73.998	ENSCPBG00000007943	VARS	96	73.846	Chrysemys_picta_bellii
ENSMAMG00000003949	vars	100	65.055	ENSCANG00000033570	VARS	100	64.646	Colobus_angolensis_palliatus
ENSMAMG00000003949	vars	100	64.567	ENSCGRG00001005686	Vars	100	64.724	Cricetulus_griseus_chok1gshd
ENSMAMG00000003949	vars	93	62.667	ENSCGRG00000013352	Vars	78	62.833	Cricetulus_griseus_crigri
ENSMAMG00000003949	vars	100	83.399	ENSCSEG00000019652	vars	100	83.255	Cynoglossus_semilaevis
ENSMAMG00000003949	vars	100	89.577	ENSCVAG00000022398	vars	100	89.577	Cyprinodon_variegatus
ENSMAMG00000003949	vars	100	84.248	ENSDARG00000044575	vars	100	84.169	Danio_rerio
ENSMAMG00000003949	vars	82	71.292	ENSDORG00000016433	Vars	93	71.388	Dipodomys_ordii
ENSMAMG00000003949	vars	68	73.960	ENSETEG00000003824	VARS	77	73.960	Echinops_telfairi
ENSMAMG00000003949	vars	52	71.629	ENSEBUG00000007086	vars	82	72.444	Eptatretus_burgeri
ENSMAMG00000003949	vars	59	63.649	ENSEBUG00000004637	vars	100	64.843	Eptatretus_burgeri
ENSMAMG00000003949	vars	100	65.211	ENSEASG00005015673	VARS	100	64.957	Equus_asinus_asinus
ENSMAMG00000003949	vars	100	65.160	ENSECAG00000014620	VARS	100	64.984	Equus_caballus
ENSMAMG00000003949	vars	71	71.429	ENSEEUG00000004116	VARS	73	71.429	Erinaceus_europaeus
ENSMAMG00000003949	vars	100	84.309	ENSELUG00000006550	vars	97	84.062	Esox_lucius
ENSMAMG00000003949	vars	100	64.875	ENSFCAG00000004510	VARS	100	64.771	Felis_catus
ENSMAMG00000003949	vars	83	69.821	ENSFDAG00000011401	VARS	100	70.213	Fukomys_damarensis
ENSMAMG00000003949	vars	100	88.088	ENSFHEG00000010672	vars	100	88.245	Fundulus_heteroclitus
ENSMAMG00000003949	vars	100	81.182	ENSGMOG00000014908	vars	100	81.138	Gadus_morhua
ENSMAMG00000003949	vars	100	88.697	ENSGAFG00000021630	vars	100	88.697	Gambusia_affinis
ENSMAMG00000003949	vars	93	90.512	ENSGACG00000009601	vars	100	86.531	Gasterosteus_aculeatus
ENSMAMG00000003949	vars	50	60.063	ENSGAGG00000006508	-	91	62.086	Gopherus_agassizii
ENSMAMG00000003949	vars	100	65.055	ENSGGOG00000011364	VARS	100	64.646	Gorilla_gorilla
ENSMAMG00000003949	vars	100	90.831	ENSHBUG00000017151	vars	97	90.831	Haplochromis_burtoni
ENSMAMG00000003949	vars	100	64.431	ENSHGLG00000011646	VARS	100	64.325	Heterocephalus_glaber_female
ENSMAMG00000003949	vars	93	61.629	ENSHGLG00100018062	VARS	99	61.629	Heterocephalus_glaber_male
ENSMAMG00000003949	vars	99	85.211	ENSHCOG00000012198	vars	99	85.446	Hippocampus_comes
ENSMAMG00000003949	vars	100	83.438	ENSIPUG00000005218	vars	100	83.542	Ictalurus_punctatus
ENSMAMG00000003949	vars	100	65.133	ENSSTOG00000013112	VARS	100	64.981	Ictidomys_tridecemlineatus
ENSMAMG00000003949	vars	100	63.906	ENSJJAG00000019749	-	100	63.931	Jaculus_jaculus
ENSMAMG00000003949	vars	100	52.471	ENSJJAG00000015343	-	98	54.319	Jaculus_jaculus
ENSMAMG00000003949	vars	100	87.390	ENSKMAG00000009455	vars	100	87.390	Kryptolebias_marmoratus
ENSMAMG00000003949	vars	100	87.918	ENSLBEG00000010341	vars	100	87.918	Labrus_bergylta
ENSMAMG00000003949	vars	94	66.008	ENSLACG00000015232	VARS	99	66.530	Latimeria_chalumnae
ENSMAMG00000003949	vars	100	74.764	ENSLOCG00000004240	vars	100	75.157	Lepisosteus_oculatus
ENSMAMG00000003949	vars	100	64.715	ENSLAFG00000023090	VARS	100	64.481	Loxodonta_africana
ENSMAMG00000003949	vars	100	64.899	ENSMFAG00000001032	VARS	100	64.569	Macaca_fascicularis
ENSMAMG00000003949	vars	100	64.899	ENSMMUG00000006828	VARS	100	64.569	Macaca_mulatta
ENSMAMG00000003949	vars	100	64.899	ENSMNEG00000042072	VARS	100	64.569	Macaca_nemestrina
ENSMAMG00000003949	vars	100	64.977	ENSMLEG00000039307	VARS	100	64.646	Mandrillus_leucophaeus
ENSMAMG00000003949	vars	100	90.831	ENSMZEG00005018327	vars	97	90.831	Maylandia_zebra
ENSMAMG00000003949	vars	100	64.460	ENSMAUG00000006715	Vars	100	64.618	Mesocricetus_auratus
ENSMAMG00000003949	vars	100	64.977	ENSMICG00000003548	VARS	100	64.514	Microcebus_murinus
ENSMAMG00000003949	vars	100	63.803	ENSMOCG00000015404	Vars	100	64.121	Microtus_ochrogaster
ENSMAMG00000003949	vars	100	87.480	ENSMMOG00000015801	vars	100	87.323	Mola_mola
ENSMAMG00000003949	vars	100	65.367	ENSMODG00000015204	-	100	65.012	Monodelphis_domestica
ENSMAMG00000003949	vars	99	91.301	ENSMALG00000022532	vars	99	91.301	Monopterus_albus
ENSMAMG00000003949	vars	100	65.183	MGP_CAROLIEiJ_G0021491	Vars	100	65.160	Mus_caroli
ENSMAMG00000003949	vars	100	65.027	ENSMUSG00000007029	Vars	100	65.183	Mus_musculus
ENSMAMG00000003949	vars	100	64.949	MGP_PahariEiJ_G0020486	Vars	100	64.926	Mus_pahari
ENSMAMG00000003949	vars	100	65.105	MGP_SPRETEiJ_G0022396	Vars	100	65.262	Mus_spretus
ENSMAMG00000003949	vars	100	64.665	ENSMPUG00000010821	VARS	100	64.646	Mustela_putorius_furo
ENSMAMG00000003949	vars	78	67.700	ENSMLUG00000013126	VARS	100	67.363	Myotis_lucifugus
ENSMAMG00000003949	vars	100	64.793	ENSNGAG00000012151	Vars	100	64.899	Nannospalax_galili
ENSMAMG00000003949	vars	100	90.439	ENSNBRG00000020520	vars	100	90.439	Neolamprologus_brichardi
ENSMAMG00000003949	vars	100	64.821	ENSNLEG00000006351	VARS	100	64.646	Nomascus_leucogenys
ENSMAMG00000003949	vars	96	72.029	ENSMEUG00000011378	VARS	100	63.551	Notamacropus_eugenii
ENSMAMG00000003949	vars	100	64.899	ENSOPRG00000003607	VARS	100	64.880	Ochotona_princeps
ENSMAMG00000003949	vars	100	64.091	ENSODEG00000017681	VARS	100	63.934	Octodon_degus
ENSMAMG00000003949	vars	100	90.211	ENSONIG00000013064	vars	100	92.334	Oreochromis_niloticus
ENSMAMG00000003949	vars	77	67.337	ENSOANG00000005400	VARS	98	66.942	Ornithorhynchus_anatinus
ENSMAMG00000003949	vars	100	63.310	ENSOCUG00000022463	VARS	100	63.141	Oryctolagus_cuniculus
ENSMAMG00000003949	vars	100	87.539	ENSORLG00000013063	vars	100	87.539	Oryzias_latipes
ENSMAMG00000003949	vars	100	88.106	ENSORLG00020003504	vars	100	87.950	Oryzias_latipes_hni
ENSMAMG00000003949	vars	100	88.254	ENSORLG00015009001	vars	100	88.097	Oryzias_latipes_hsok
ENSMAMG00000003949	vars	100	88.880	ENSOMEG00000015016	vars	100	88.880	Oryzias_melastigma
ENSMAMG00000003949	vars	100	64.509	ENSOGAG00000007515	VARS	100	64.376	Otolemur_garnettii
ENSMAMG00000003949	vars	100	64.665	ENSPPAG00000034012	VARS	100	64.413	Pan_paniscus
ENSMAMG00000003949	vars	100	64.875	ENSPPRG00000014855	VARS	100	64.701	Panthera_pardus
ENSMAMG00000003949	vars	86	68.556	ENSPTIG00000010462	VARS	93	68.558	Panthera_tigris_altaica
ENSMAMG00000003949	vars	100	64.587	ENSPTRG00000017985	VARS	100	64.336	Pan_troglodytes
ENSMAMG00000003949	vars	100	63.411	ENSPANG00000014565	VARS	100	63.089	Papio_anubis
ENSMAMG00000003949	vars	100	81.464	ENSPKIG00000016304	vars	100	81.386	Paramormyrops_kingsleyae
ENSMAMG00000003949	vars	100	85.039	ENSPMGG00000023909	vars	100	84.882	Periophthalmus_magnuspinnatus
ENSMAMG00000003949	vars	100	64.536	ENSPEMG00000006639	Vars	100	64.534	Peromyscus_maniculatus_bairdii
ENSMAMG00000003949	vars	100	65.211	ENSPCIG00000018553	VARS	100	64.850	Phascolarctos_cinereus
ENSMAMG00000003949	vars	100	88.932	ENSPFOG00000015690	vars	100	88.932	Poecilia_formosa
ENSMAMG00000003949	vars	100	88.776	ENSPLAG00000009590	vars	100	88.776	Poecilia_latipinna
ENSMAMG00000003949	vars	100	88.932	ENSPMEG00000004708	vars	100	88.932	Poecilia_mexicana
ENSMAMG00000003949	vars	100	84.559	ENSPREG00000013264	vars	97	92.292	Poecilia_reticulata
ENSMAMG00000003949	vars	100	63.339	ENSPPYG00000016460	VARS	100	63.283	Pongo_abelii
ENSMAMG00000003949	vars	86	66.075	ENSPCAG00000013565	VARS	86	66.369	Procavia_capensis
ENSMAMG00000003949	vars	100	64.642	ENSPCOG00000010942	VARS	100	64.596	Propithecus_coquereli
ENSMAMG00000003949	vars	100	62.461	ENSPVAG00000012403	VARS	100	62.335	Pteropus_vampyrus
ENSMAMG00000003949	vars	100	90.831	ENSPNYG00000022511	vars	100	90.831	Pundamilia_nyererei
ENSMAMG00000003949	vars	100	84.832	ENSPNAG00000020962	vars	100	84.910	Pygocentrus_nattereri
ENSMAMG00000003949	vars	100	64.743	ENSRNOG00000000867	Vars	100	64.771	Rattus_norvegicus
ENSMAMG00000003949	vars	100	64.977	ENSRBIG00000041669	VARS	100	64.569	Rhinopithecus_bieti
ENSMAMG00000003949	vars	100	64.977	ENSRROG00000045490	VARS	100	64.569	Rhinopithecus_roxellana
ENSMAMG00000003949	vars	100	64.509	ENSSBOG00000035402	VARS	100	64.376	Saimiri_boliviensis_boliviensis
ENSMAMG00000003949	vars	100	64.434	ENSSHAG00000006937	VARS	100	63.595	Sarcophilus_harrisii
ENSMAMG00000003949	vars	100	80.577	ENSSFOG00015014272	vars	98	85.366	Scleropages_formosus
ENSMAMG00000003949	vars	100	89.428	ENSSMAG00000009596	vars	99	89.428	Scophthalmus_maximus
ENSMAMG00000003949	vars	100	92.169	ENSSDUG00000014177	vars	100	92.169	Seriola_dumerili
ENSMAMG00000003949	vars	100	91.778	ENSSLDG00000025316	vars	100	91.778	Seriola_lalandi_dorsalis
ENSMAMG00000003949	vars	100	91.352	ENSSPAG00000017068	vars	100	91.667	Stegastes_partitus
ENSMAMG00000003949	vars	100	64.224	ENSSSCG00000038950	VARS	100	64.208	Sus_scrofa
ENSMAMG00000003949	vars	81	83.400	ENSTRUG00000012307	vars	98	81.853	Takifugu_rubripes
ENSMAMG00000003949	vars	100	87.264	ENSTNIG00000008011	vars	100	87.107	Tetraodon_nigroviridis
ENSMAMG00000003949	vars	100	59.023	ENSTTRG00000014128	VARS	100	59.023	Tursiops_truncatus
ENSMAMG00000003949	vars	100	63.170	ENSUAMG00000010424	VARS	100	63.178	Ursus_americanus
ENSMAMG00000003949	vars	100	59.782	ENSUMAG00000013486	VARS	100	59.782	Ursus_maritimus
ENSMAMG00000003949	vars	100	64.697	ENSVVUG00000021323	VARS	100	64.622	Vulpes_vulpes
ENSMAMG00000003949	vars	100	64.252	ENSXETG00000024076	vars	100	64.025	Xenopus_tropicalis
ENSMAMG00000003949	vars	100	87.018	ENSXCOG00000019172	vars	100	87.018	Xiphophorus_couchianus
ENSMAMG00000003949	vars	100	88.619	ENSXMAG00000010927	vars	100	88.540	Xiphophorus_maculatus