EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000004279 (Gene tree)
Gene ID: 113135078
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 7002 bases
Position: chrOOHQ01000019.1:16378752-16385753
Accession: 113135078
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000006298	AD	PF09793.9	1.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000006474	-	2013	-	ENSMAMP00000006298	196 (aa)	XP_026170499	UPI000E4553B2

Gene Model

Click here to download ENSMAMG00000004279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004279	lsm12b	100	85.204	ENSG00000161654	LSM12	100	85.204	Homo_sapiens
ENSMAMG00000004279	lsm12b	100	98.980	ENSAPOG00000007907	lsm12b	100	98.980	Acanthochromis_polyacanthus
ENSMAMG00000004279	lsm12b	100	83.417	ENSAMEG00000018321	LSM12	100	83.417	Ailuropoda_melanoleuca
ENSMAMG00000004279	lsm12b	100	97.449	ENSACIG00000008538	lsm12b	100	97.449	Amphilophus_citrinellus
ENSMAMG00000004279	lsm12b	100	99.490	ENSAOCG00000021847	lsm12b	88	99.490	Amphiprion_ocellaris
ENSMAMG00000004279	lsm12b	100	99.490	ENSAPEG00000002252	lsm12b	100	99.490	Amphiprion_percula
ENSMAMG00000004279	lsm12b	100	97.959	ENSATEG00000005705	lsm12b	100	97.959	Anabas_testudineus
ENSMAMG00000004279	lsm12b	100	84.184	ENSACAG00000004618	LSM12	100	84.184	Anolis_carolinensis
ENSMAMG00000004279	lsm12b	100	85.204	ENSANAG00000029011	LSM12	100	85.204	Aotus_nancymaae
ENSMAMG00000004279	lsm12b	100	97.959	ENSACLG00000026332	lsm12b	100	97.959	Astatotilapia_calliptera
ENSMAMG00000004279	lsm12b	100	86.735	ENSAMXG00000036117	lsm12a	91	86.735	Astyanax_mexicanus
ENSMAMG00000004279	lsm12b	100	94.388	ENSAMXG00000032952	lsm12b	100	94.388	Astyanax_mexicanus
ENSMAMG00000004279	lsm12b	100	85.204	ENSBTAG00000016252	LSM12	100	85.204	Bos_taurus
ENSMAMG00000004279	lsm12b	100	85.204	ENSCJAG00000048480	LSM12	100	85.204	Callithrix_jacchus
ENSMAMG00000004279	lsm12b	100	85.204	ENSCAFG00000014379	LSM12	92	85.204	Canis_familiaris
ENSMAMG00000004279	lsm12b	100	85.204	ENSCAFG00020012173	LSM12	100	85.204	Canis_lupus_dingo
ENSMAMG00000004279	lsm12b	100	85.204	ENSCHIG00000018175	LSM12	100	85.204	Capra_hircus
ENSMAMG00000004279	lsm12b	100	85.204	ENSTSYG00000036361	LSM12	100	85.204	Carlito_syrichta
ENSMAMG00000004279	lsm12b	83	80.864	ENSCAPG00000009647	LSM12	89	80.864	Cavia_aperea
ENSMAMG00000004279	lsm12b	100	84.184	ENSCPOG00000012860	LSM12	100	84.184	Cavia_porcellus
ENSMAMG00000004279	lsm12b	100	85.204	ENSCCAG00000032905	LSM12	100	85.204	Cebus_capucinus
ENSMAMG00000004279	lsm12b	100	85.204	ENSCATG00000030577	-	100	85.204	Cercocebus_atys
ENSMAMG00000004279	lsm12b	100	84.694	ENSCLAG00000015759	LSM12	100	84.694	Chinchilla_lanigera
ENSMAMG00000004279	lsm12b	100	85.714	ENSCSAG00000003486	LSM12	100	85.714	Chlorocebus_sabaeus
ENSMAMG00000004279	lsm12b	56	86.239	ENSCHOG00000001198	LSM12	100	86.239	Choloepus_hoffmanni
ENSMAMG00000004279	lsm12b	100	85.714	ENSCPBG00000027105	LSM12	100	85.714	Chrysemys_picta_bellii
ENSMAMG00000004279	lsm12b	100	85.204	ENSCANG00000043328	LSM12	100	85.204	Colobus_angolensis_palliatus
ENSMAMG00000004279	lsm12b	100	85.204	ENSCGRG00001002094	Lsm12	100	85.204	Cricetulus_griseus_chok1gshd
ENSMAMG00000004279	lsm12b	89	77.011	ENSCGRG00000004316	Lsm12	98	77.011	Cricetulus_griseus_crigri
ENSMAMG00000004279	lsm12b	100	97.959	ENSCSEG00000008434	lsm12b	100	97.959	Cynoglossus_semilaevis
ENSMAMG00000004279	lsm12b	100	97.449	ENSCVAG00000008755	lsm12b	100	97.449	Cyprinodon_variegatus
ENSMAMG00000004279	lsm12b	100	87.755	ENSDARG00000028848	lsm12a	100	87.755	Danio_rerio
ENSMAMG00000004279	lsm12b	100	94.898	ENSDARG00000109510	lsm12b	100	94.898	Danio_rerio
ENSMAMG00000004279	lsm12b	100	85.204	ENSDNOG00000002418	LSM12	91	85.204	Dasypus_novemcinctus
ENSMAMG00000004279	lsm12b	100	85.204	ENSDORG00000016381	Lsm12	100	85.204	Dipodomys_ordii
ENSMAMG00000004279	lsm12b	83	33.735	FBgn0030364	Lsm12	76	33.735	Drosophila_melanogaster
ENSMAMG00000004279	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSMAMG00000004279	lsm12b	88	76.301	ENSETEG00000011012	-	99	76.301	Echinops_telfairi
ENSMAMG00000004279	lsm12b	100	84.694	ENSETEG00000008374	LSM12	100	84.694	Echinops_telfairi
ENSMAMG00000004279	lsm12b	85	67.066	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSMAMG00000004279	lsm12b	100	85.204	ENSEASG00005010155	LSM12	100	85.204	Equus_asinus_asinus
ENSMAMG00000004279	lsm12b	100	85.204	ENSECAG00000009071	LSM12	100	85.204	Equus_caballus
ENSMAMG00000004279	lsm12b	78	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSMAMG00000004279	lsm12b	100	92.347	ENSELUG00000000256	-	100	92.347	Esox_lucius
ENSMAMG00000004279	lsm12b	100	94.898	ENSELUG00000015538	lsm12b	100	90.306	Esox_lucius
ENSMAMG00000004279	lsm12b	100	85.204	ENSFCAG00000037021	LSM12	100	85.204	Felis_catus
ENSMAMG00000004279	lsm12b	80	81.410	ENSFDAG00000008954	LSM12	91	81.410	Fukomys_damarensis
ENSMAMG00000004279	lsm12b	100	97.449	ENSFHEG00000019913	lsm12b	100	97.449	Fundulus_heteroclitus
ENSMAMG00000004279	lsm12b	81	98.101	ENSGMOG00000015449	lsm12b	100	98.101	Gadus_morhua
ENSMAMG00000004279	lsm12b	78	85.621	ENSGALG00000039803	LSM12	100	85.621	Gallus_gallus
ENSMAMG00000004279	lsm12b	100	97.449	ENSGAFG00000011829	lsm12b	100	97.449	Gambusia_affinis
ENSMAMG00000004279	lsm12b	81	98.734	ENSGACG00000003428	lsm12b	100	98.734	Gasterosteus_aculeatus
ENSMAMG00000004279	lsm12b	100	84.694	ENSGAGG00000021965	LSM12	100	84.694	Gopherus_agassizii
ENSMAMG00000004279	lsm12b	100	85.204	ENSGGOG00000010589	-	100	85.204	Gorilla_gorilla
ENSMAMG00000004279	lsm12b	85	97.605	ENSHBUG00000007667	lsm12b	74	97.605	Haplochromis_burtoni
ENSMAMG00000004279	lsm12b	100	85.204	ENSHGLG00000011411	LSM12	100	85.204	Heterocephalus_glaber_female
ENSMAMG00000004279	lsm12b	79	84.416	ENSHGLG00100000241	LSM12	82	84.416	Heterocephalus_glaber_male
ENSMAMG00000004279	lsm12b	100	95.408	ENSHCOG00000002094	lsm12b	100	95.408	Hippocampus_comes
ENSMAMG00000004279	lsm12b	99	83.505	ENSIPUG00000008936	lsm12a	99	83.505	Ictalurus_punctatus
ENSMAMG00000004279	lsm12b	100	94.388	ENSIPUG00000014800	lsm12	100	94.388	Ictalurus_punctatus
ENSMAMG00000004279	lsm12b	100	85.204	ENSSTOG00000007403	LSM12	100	85.204	Ictidomys_tridecemlineatus
ENSMAMG00000004279	lsm12b	100	84.184	ENSJJAG00000004364	-	100	84.685	Jaculus_jaculus
ENSMAMG00000004279	lsm12b	96	75.789	ENSJJAG00000011793	-	100	75.789	Jaculus_jaculus
ENSMAMG00000004279	lsm12b	80	72.956	ENSJJAG00000014652	-	95	72.956	Jaculus_jaculus
ENSMAMG00000004279	lsm12b	85	97.006	ENSKMAG00000007704	lsm12b	56	97.006	Kryptolebias_marmoratus
ENSMAMG00000004279	lsm12b	100	98.980	ENSLBEG00000027999	lsm12b	100	98.980	Labrus_bergylta
ENSMAMG00000004279	lsm12b	100	87.755	ENSLACG00000015981	LSM12	100	87.755	Latimeria_chalumnae
ENSMAMG00000004279	lsm12b	100	93.367	ENSLOCG00000013079	lsm12b	99	93.367	Lepisosteus_oculatus
ENSMAMG00000004279	lsm12b	100	85.204	ENSLAFG00000005202	LSM12	100	85.204	Loxodonta_africana
ENSMAMG00000004279	lsm12b	100	85.204	ENSMFAG00000031376	LSM12	100	85.204	Macaca_fascicularis
ENSMAMG00000004279	lsm12b	100	85.204	ENSMMUG00000006804	LSM12	100	85.204	Macaca_mulatta
ENSMAMG00000004279	lsm12b	65	74.713	ENSMMUG00000042106	-	100	74.713	Macaca_mulatta
ENSMAMG00000004279	lsm12b	100	85.204	ENSMNEG00000030594	-	100	85.204	Macaca_nemestrina
ENSMAMG00000004279	lsm12b	100	85.204	ENSMLEG00000039934	LSM12	100	85.204	Mandrillus_leucophaeus
ENSMAMG00000004279	lsm12b	100	97.959	ENSMZEG00005005754	lsm12b	100	97.959	Maylandia_zebra
ENSMAMG00000004279	lsm12b	100	85.714	ENSMICG00000037219	LSM12	100	85.714	Microcebus_murinus
ENSMAMG00000004279	lsm12b	100	73.469	ENSMOCG00000017015	-	86	73.469	Microtus_ochrogaster
ENSMAMG00000004279	lsm12b	100	85.204	ENSMOCG00000019878	-	100	85.204	Microtus_ochrogaster
ENSMAMG00000004279	lsm12b	100	98.980	ENSMMOG00000020848	lsm12b	100	98.980	Mola_mola
ENSMAMG00000004279	lsm12b	100	98.980	ENSMALG00000007578	lsm12b	100	98.980	Monopterus_albus
ENSMAMG00000004279	lsm12b	100	84.694	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.694	Mus_caroli
ENSMAMG00000004279	lsm12b	100	85.204	ENSMUSG00000020922	Lsm12	100	85.204	Mus_musculus
ENSMAMG00000004279	lsm12b	100	78.404	MGP_PahariEiJ_G0018371	Lsm12	100	78.404	Mus_pahari
ENSMAMG00000004279	lsm12b	100	84.694	MGP_SPRETEiJ_G0018084	Lsm12	100	84.694	Mus_spretus
ENSMAMG00000004279	lsm12b	100	85.714	ENSMLUG00000006391	LSM12	100	85.714	Myotis_lucifugus
ENSMAMG00000004279	lsm12b	100	58.621	ENSNGAG00000015429	-	100	58.621	Nannospalax_galili
ENSMAMG00000004279	lsm12b	100	85.204	ENSNGAG00000001870	Lsm12	100	85.204	Nannospalax_galili
ENSMAMG00000004279	lsm12b	100	97.959	ENSNBRG00000006266	lsm12b	100	97.959	Neolamprologus_brichardi
ENSMAMG00000004279	lsm12b	100	85.204	ENSNLEG00000005580	-	100	85.204	Nomascus_leucogenys
ENSMAMG00000004279	lsm12b	85	84.940	ENSMEUG00000007501	-	100	84.940	Notamacropus_eugenii
ENSMAMG00000004279	lsm12b	100	85.204	ENSOPRG00000008552	LSM12	100	85.204	Ochotona_princeps
ENSMAMG00000004279	lsm12b	99	85.052	ENSODEG00000017998	-	99	85.052	Octodon_degus
ENSMAMG00000004279	lsm12b	100	77.551	ENSODEG00000007886	-	74	77.551	Octodon_degus
ENSMAMG00000004279	lsm12b	100	97.959	ENSONIG00000007933	lsm12b	100	97.959	Oreochromis_niloticus
ENSMAMG00000004279	lsm12b	99	79.487	ENSOCUG00000027889	-	100	79.487	Oryctolagus_cuniculus
ENSMAMG00000004279	lsm12b	99	80.000	ENSOCUG00000021254	-	100	80.000	Oryctolagus_cuniculus
ENSMAMG00000004279	lsm12b	100	83.417	ENSOCUG00000008566	-	100	83.417	Oryctolagus_cuniculus
ENSMAMG00000004279	lsm12b	99	78.974	ENSOCUG00000024823	-	100	78.974	Oryctolagus_cuniculus
ENSMAMG00000004279	lsm12b	100	97.449	ENSORLG00000011310	lsm12b	100	97.449	Oryzias_latipes
ENSMAMG00000004279	lsm12b	100	97.449	ENSORLG00020002060	lsm12b	92	97.449	Oryzias_latipes_hni
ENSMAMG00000004279	lsm12b	100	97.449	ENSORLG00015001647	lsm12b	92	97.449	Oryzias_latipes_hsok
ENSMAMG00000004279	lsm12b	100	98.469	ENSOMEG00000006184	lsm12b	92	98.469	Oryzias_melastigma
ENSMAMG00000004279	lsm12b	100	85.714	ENSOGAG00000010489	LSM12	100	85.714	Otolemur_garnettii
ENSMAMG00000004279	lsm12b	100	82.178	ENSOARG00000006589	LSM12	100	82.178	Ovis_aries
ENSMAMG00000004279	lsm12b	100	75.510	ENSPPAG00000034974	-	100	75.510	Pan_paniscus
ENSMAMG00000004279	lsm12b	100	85.204	ENSPPRG00000023420	LSM12	100	85.204	Panthera_pardus
ENSMAMG00000004279	lsm12b	73	83.784	ENSPTIG00000014850	-	100	83.784	Panthera_tigris_altaica
ENSMAMG00000004279	lsm12b	78	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSMAMG00000004279	lsm12b	100	85.204	ENSPTRG00000009261	LSM12	100	85.204	Pan_troglodytes
ENSMAMG00000004279	lsm12b	100	85.204	ENSPANG00000021315	-	100	85.204	Papio_anubis
ENSMAMG00000004279	lsm12b	100	84.694	ENSPKIG00000017932	-	100	84.694	Paramormyrops_kingsleyae
ENSMAMG00000004279	lsm12b	100	93.878	ENSPKIG00000021058	lsm12b	100	93.878	Paramormyrops_kingsleyae
ENSMAMG00000004279	lsm12b	100	97.959	ENSPMGG00000021344	lsm12b	100	97.959	Periophthalmus_magnuspinnatus
ENSMAMG00000004279	lsm12b	100	85.204	ENSPEMG00000012199	Lsm12	100	85.204	Peromyscus_maniculatus_bairdii
ENSMAMG00000004279	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSMAMG00000004279	lsm12b	100	85.204	ENSPCIG00000020244	LSM12	100	85.204	Phascolarctos_cinereus
ENSMAMG00000004279	lsm12b	100	96.939	ENSPFOG00000015930	lsm12b	100	96.939	Poecilia_formosa
ENSMAMG00000004279	lsm12b	100	96.939	ENSPLAG00000021089	lsm12b	100	96.939	Poecilia_latipinna
ENSMAMG00000004279	lsm12b	100	96.939	ENSPMEG00000012961	lsm12b	100	96.939	Poecilia_mexicana
ENSMAMG00000004279	lsm12b	87	97.661	ENSPREG00000010236	lsm12b	95	97.661	Poecilia_reticulata
ENSMAMG00000004279	lsm12b	100	85.204	ENSPPYG00000008344	LSM12	100	85.204	Pongo_abelii
ENSMAMG00000004279	lsm12b	81	85.535	ENSPCAG00000008790	LSM12	100	85.535	Procavia_capensis
ENSMAMG00000004279	lsm12b	100	85.204	ENSPCOG00000027951	LSM12	100	85.204	Propithecus_coquereli
ENSMAMG00000004279	lsm12b	100	85.714	ENSPVAG00000013706	LSM12	100	85.714	Pteropus_vampyrus
ENSMAMG00000004279	lsm12b	100	97.959	ENSPNYG00000003386	lsm12b	100	97.959	Pundamilia_nyererei
ENSMAMG00000004279	lsm12b	100	94.388	ENSPNAG00000004186	lsm12b	100	94.388	Pygocentrus_nattereri
ENSMAMG00000004279	lsm12b	100	85.714	ENSPNAG00000018435	lsm12a	100	85.714	Pygocentrus_nattereri
ENSMAMG00000004279	lsm12b	100	85.204	ENSRNOG00000020894	Lsm12	100	85.204	Rattus_norvegicus
ENSMAMG00000004279	lsm12b	100	85.204	ENSRBIG00000027910	LSM12	100	85.204	Rhinopithecus_bieti
ENSMAMG00000004279	lsm12b	99	53.093	ENSRROG00000000537	-	99	53.093	Rhinopithecus_roxellana
ENSMAMG00000004279	lsm12b	100	85.204	ENSRROG00000045530	-	100	85.204	Rhinopithecus_roxellana
ENSMAMG00000004279	lsm12b	100	85.204	ENSSBOG00000025310	LSM12	100	85.204	Saimiri_boliviensis_boliviensis
ENSMAMG00000004279	lsm12b	81	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSMAMG00000004279	lsm12b	100	94.898	ENSSFOG00015009612	lsm12	100	94.898	Scleropages_formosus
ENSMAMG00000004279	lsm12b	100	94.898	ENSSFOG00015020392	lsm12a	100	94.898	Scleropages_formosus
ENSMAMG00000004279	lsm12b	100	98.980	ENSSMAG00000008089	lsm12b	100	98.980	Scophthalmus_maximus
ENSMAMG00000004279	lsm12b	100	98.980	ENSSDUG00000012711	lsm12b	100	98.980	Seriola_dumerili
ENSMAMG00000004279	lsm12b	100	98.980	ENSSLDG00000007404	lsm12b	100	98.980	Seriola_lalandi_dorsalis
ENSMAMG00000004279	lsm12b	78	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSMAMG00000004279	lsm12b	100	85.714	ENSSPUG00000011984	LSM12	100	85.714	Sphenodon_punctatus
ENSMAMG00000004279	lsm12b	100	99.490	ENSSPAG00000017058	lsm12b	100	99.490	Stegastes_partitus
ENSMAMG00000004279	lsm12b	100	85.204	ENSSSCG00000032394	LSM12	100	85.204	Sus_scrofa
ENSMAMG00000004279	lsm12b	100	97.959	ENSTRUG00000007121	lsm12b	100	97.959	Takifugu_rubripes
ENSMAMG00000004279	lsm12b	100	96.939	ENSTNIG00000014436	lsm12b	100	96.939	Tetraodon_nigroviridis
ENSMAMG00000004279	lsm12b	100	84.694	ENSTBEG00000012523	-	100	84.694	Tupaia_belangeri
ENSMAMG00000004279	lsm12b	100	82.653	ENSTBEG00000012392	-	100	82.653	Tupaia_belangeri
ENSMAMG00000004279	lsm12b	100	85.204	ENSTTRG00000010433	LSM12	100	85.204	Tursiops_truncatus
ENSMAMG00000004279	lsm12b	100	85.204	ENSUAMG00000006313	LSM12	100	85.204	Ursus_americanus
ENSMAMG00000004279	lsm12b	81	82.278	ENSUMAG00000012987	LSM12	90	82.278	Ursus_maritimus
ENSMAMG00000004279	lsm12b	100	80.612	ENSVPAG00000011145	LSM12	100	80.612	Vicugna_pacos
ENSMAMG00000004279	lsm12b	100	85.204	ENSVVUG00000017581	LSM12	100	85.204	Vulpes_vulpes
ENSMAMG00000004279	lsm12b	82	61.250	ENSXETG00000003371	lsm12	77	61.250	Xenopus_tropicalis
ENSMAMG00000004279	lsm12b	100	97.449	ENSXCOG00000003994	lsm12b	100	97.449	Xiphophorus_couchianus
ENSMAMG00000004279	lsm12b	100	97.449	ENSXMAG00000020950	lsm12b	100	97.449	Xiphophorus_maculatus