EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000004333 (Gene tree)
Gene ID: 113127161
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 13845 bases
Position: chrOOHQ01000099.1:2049878-2063722
Accession: 113127161
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000006419	RRM_1	PF00076.22	2.4e-30	1	2
ENSMAMP00000006419	RRM_1	PF00076.22	2.4e-30	2	2
ENSMAMP00000006387	RRM_1	PF00076.22	2.7e-30	1	2
ENSMAMP00000006387	RRM_1	PF00076.22	2.7e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000006568	-	5932	-	ENSMAMP00000006387	529 (aa)	XP_026157263	UPI000E46018F
ENSMAMT00000006599	-	1491	-	ENSMAMP00000006419	496 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000004333's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004333's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000004333	pspc1	62	68.182	ENSMAMG00000007314	nono	80	63.859
ENSMAMG00000004333	pspc1	88	50.873	ENSMAMG00000007875	sfpq	62	58.205

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004333	pspc1	77	71.628	ENSG00000121390	PSPC1	82	78.086	Homo_sapiens
ENSMAMG00000004333	pspc1	100	83.804	ENSAPOG00000015946	pspc1	100	83.992	Acanthochromis_polyacanthus
ENSMAMG00000004333	pspc1	96	58.846	ENSAMEG00000017420	PSPC1	88	67.835	Ailuropoda_melanoleuca
ENSMAMG00000004333	pspc1	100	76.275	ENSACIG00000018695	pspc1	100	76.275	Amphilophus_citrinellus
ENSMAMG00000004333	pspc1	100	84.181	ENSAOCG00000005279	pspc1	100	84.369	Amphiprion_ocellaris
ENSMAMG00000004333	pspc1	100	84.181	ENSAPEG00000015927	pspc1	100	84.369	Amphiprion_percula
ENSMAMG00000004333	pspc1	100	76.413	ENSATEG00000004878	pspc1	100	76.803	Anabas_testudineus
ENSMAMG00000004333	pspc1	68	70.400	ENSAPLG00000006246	PSPC1	100	66.121	Anas_platyrhynchos
ENSMAMG00000004333	pspc1	67	64.444	ENSAPLG00000003643	SFPQ	78	59.091	Anas_platyrhynchos
ENSMAMG00000004333	pspc1	88	64.826	ENSACAG00000002093	PSPC1	88	66.258	Anolis_carolinensis
ENSMAMG00000004333	pspc1	68	56.180	ENSACAG00000013307	-	62	56.618	Anolis_carolinensis
ENSMAMG00000004333	pspc1	91	63.441	ENSANAG00000000059	PSPC1	83	76.852	Aotus_nancymaae
ENSMAMG00000004333	pspc1	100	75.781	ENSACLG00000027220	pspc1	100	75.977	Astatotilapia_calliptera
ENSMAMG00000004333	pspc1	100	64.801	ENSAMXG00000036881	pspc1	100	64.065	Astyanax_mexicanus
ENSMAMG00000004333	pspc1	90	65.180	ENSBTAG00000003934	PSPC1	91	66.331	Bos_taurus
ENSMAMG00000004333	pspc1	91	62.366	ENSCJAG00000004554	PSPC1	88	67.629	Callithrix_jacchus
ENSMAMG00000004333	pspc1	87	62.260	ENSCAFG00020002009	PSPC1	83	78.086	Canis_lupus_dingo
ENSMAMG00000004333	pspc1	90	61.491	ENSCHIG00000016708	PSPC1	91	66.331	Capra_hircus
ENSMAMG00000004333	pspc1	74	65.990	ENSTSYG00000032882	PSPC1	88	67.677	Carlito_syrichta
ENSMAMG00000004333	pspc1	87	61.702	ENSCPOG00000000395	PSPC1	86	76.418	Cavia_porcellus
ENSMAMG00000004333	pspc1	86	67.158	ENSCCAG00000033498	PSPC1	88	67.835	Cebus_capucinus
ENSMAMG00000004333	pspc1	77	71.395	ENSCATG00000036434	PSPC1	90	78.086	Cercocebus_atys
ENSMAMG00000004333	pspc1	67	70.526	ENSCLAG00000005241	PSPC1	92	66.207	Chinchilla_lanigera
ENSMAMG00000004333	pspc1	82	64.602	ENSCHOG00000008913	PSPC1	90	62.880	Choloepus_hoffmanni
ENSMAMG00000004333	pspc1	82	69.180	ENSCPBG00000020859	PSPC1	90	66.397	Chrysemys_picta_bellii
ENSMAMG00000004333	pspc1	58	55.049	ENSCSAVG00000003533	-	53	57.194	Ciona_savignyi
ENSMAMG00000004333	pspc1	71	60.714	ENSCANG00000018948	PSPC1	87	80.153	Colobus_angolensis_palliatus
ENSMAMG00000004333	pspc1	87	62.260	ENSCGRG00001018368	Pspc1	88	67.423	Cricetulus_griseus_chok1gshd
ENSMAMG00000004333	pspc1	87	62.260	ENSCGRG00000011724	Pspc1	88	67.423	Cricetulus_griseus_crigri
ENSMAMG00000004333	pspc1	100	72.368	ENSCVAG00000007679	-	100	72.744	Cyprinodon_variegatus
ENSMAMG00000004333	pspc1	97	63.308	ENSDARG00000006621	pspc1	100	67.064	Danio_rerio
ENSMAMG00000004333	pspc1	88	62.025	ENSDNOG00000011078	PSPC1	90	66.465	Dasypus_novemcinctus
ENSMAMG00000004333	pspc1	87	64.167	ENSDORG00000016050	Pspc1	89	64.490	Dipodomys_ordii
ENSMAMG00000004333	pspc1	87	51.441	ENSEBUG00000003964	-	63	67.045	Eptatretus_burgeri
ENSMAMG00000004333	pspc1	59	43.438	ENSEBUG00000010133	pspc1	75	45.645	Eptatretus_burgeri
ENSMAMG00000004333	pspc1	87	62.687	ENSEASG00005000119	PSPC1	86	75.595	Equus_asinus_asinus
ENSMAMG00000004333	pspc1	87	62.687	ENSECAG00000017286	PSPC1	86	75.595	Equus_caballus
ENSMAMG00000004333	pspc1	57	61.667	ENSEEUG00000011288	-	51	68.462	Erinaceus_europaeus
ENSMAMG00000004333	pspc1	100	64.801	ENSELUG00000003746	pspc1	100	66.546	Esox_lucius
ENSMAMG00000004333	pspc1	77	71.860	ENSFCAG00000027841	PSPC1	83	78.086	Felis_catus
ENSMAMG00000004333	pspc1	81	69.752	ENSFALG00000008750	PSPC1	90	66.197	Ficedula_albicollis
ENSMAMG00000004333	pspc1	91	61.475	ENSFDAG00000002617	PSPC1	93	66.532	Fukomys_damarensis
ENSMAMG00000004333	pspc1	100	60.440	ENSGMOG00000015074	pspc1	100	62.222	Gadus_morhua
ENSMAMG00000004333	pspc1	79	70.670	ENSGALG00000017142	PSPC1	90	66.194	Gallus_gallus
ENSMAMG00000004333	pspc1	73	77.099	ENSGAFG00000006327	pspc1	81	76.845	Gambusia_affinis
ENSMAMG00000004333	pspc1	100	72.608	ENSGACG00000014901	pspc1	94	81.306	Gasterosteus_aculeatus
ENSMAMG00000004333	pspc1	69	62.264	ENSGAGG00000017325	-	64	58.294	Gopherus_agassizii
ENSMAMG00000004333	pspc1	82	69.180	ENSGAGG00000019164	PSPC1	90	66.397	Gopherus_agassizii
ENSMAMG00000004333	pspc1	77	71.628	ENSGGOG00000003414	PSPC1	82	78.086	Gorilla_gorilla
ENSMAMG00000004333	pspc1	100	81.733	ENSHBUG00000001139	pspc1	100	82.298	Haplochromis_burtoni
ENSMAMG00000004333	pspc1	89	62.083	ENSHGLG00000018811	PSPC1	91	66.532	Heterocephalus_glaber_female
ENSMAMG00000004333	pspc1	57	76.490	ENSHGLG00100007962	PSPC1	91	77.181	Heterocephalus_glaber_male
ENSMAMG00000004333	pspc1	78	78.606	ENSHCOG00000013251	pspc1	98	74.603	Hippocampus_comes
ENSMAMG00000004333	pspc1	100	66.176	ENSIPUG00000013192	pspc1	100	66.728	Ictalurus_punctatus
ENSMAMG00000004333	pspc1	89	61.925	ENSSTOG00000026833	PSPC1	85	76.577	Ictidomys_tridecemlineatus
ENSMAMG00000004333	pspc1	75	73.236	ENSJJAG00000018334	Pspc1	88	67.216	Jaculus_jaculus
ENSMAMG00000004333	pspc1	100	62.664	ENSKMAG00000013525	-	98	70.986	Kryptolebias_marmoratus
ENSMAMG00000004333	pspc1	99	77.024	ENSLBEG00000004474	pspc1	99	76.648	Labrus_bergylta
ENSMAMG00000004333	pspc1	100	54.935	ENSLACG00000010762	PSPC1	88	65.638	Latimeria_chalumnae
ENSMAMG00000004333	pspc1	83	70.897	ENSLOCG00000010832	pspc1	91	70.021	Lepisosteus_oculatus
ENSMAMG00000004333	pspc1	79	70.748	ENSLAFG00000010968	PSPC1	90	66.532	Loxodonta_africana
ENSMAMG00000004333	pspc1	77	71.395	ENSMFAG00000032728	PSPC1	91	78.154	Macaca_fascicularis
ENSMAMG00000004333	pspc1	77	71.395	ENSMMUG00000020262	PSPC1	88	78.086	Macaca_mulatta
ENSMAMG00000004333	pspc1	77	71.395	ENSMNEG00000027401	PSPC1	85	73.201	Macaca_nemestrina
ENSMAMG00000004333	pspc1	66	71.739	ENSMLEG00000039043	PSPC1	94	67.139	Mandrillus_leucophaeus
ENSMAMG00000004333	pspc1	100	75.781	ENSMZEG00005005726	pspc1	100	75.977	Maylandia_zebra
ENSMAMG00000004333	pspc1	68	70.292	ENSMGAG00000015134	PSPC1	100	66.047	Meleagris_gallopavo
ENSMAMG00000004333	pspc1	76	68.702	ENSMAUG00000021067	Pspc1	85	69.133	Mesocricetus_auratus
ENSMAMG00000004333	pspc1	88	68.041	ENSMICG00000013970	PSPC1	83	78.086	Microcebus_murinus
ENSMAMG00000004333	pspc1	87	61.834	ENSMOCG00000006060	Pspc1	88	67.010	Microtus_ochrogaster
ENSMAMG00000004333	pspc1	74	85.714	ENSMMOG00000004352	pspc1	66	85.714	Mola_mola
ENSMAMG00000004333	pspc1	75	73.966	ENSMODG00000008029	PSPC1	66	73.966	Monodelphis_domestica
ENSMAMG00000004333	pspc1	100	80.755	ENSMALG00000008914	pspc1	100	80.377	Monopterus_albus
ENSMAMG00000004333	pspc1	75	73.058	MGP_CAROLIEiJ_G0019341	Pspc1	86	72.772	Mus_caroli
ENSMAMG00000004333	pspc1	87	61.915	ENSMUSG00000021938	Pspc1	86	72.772	Mus_musculus
ENSMAMG00000004333	pspc1	87	62.128	MGP_PahariEiJ_G0030359	Pspc1	86	72.772	Mus_pahari
ENSMAMG00000004333	pspc1	87	61.915	MGP_SPRETEiJ_G0020232	Pspc1	86	72.772	Mus_spretus
ENSMAMG00000004333	pspc1	87	62.260	ENSMPUG00000013347	PSPC1	88	67.835	Mustela_putorius_furo
ENSMAMG00000004333	pspc1	88	61.845	ENSMLUG00000017663	PSPC1	90	66.531	Myotis_lucifugus
ENSMAMG00000004333	pspc1	88	67.216	ENSNGAG00000011271	Pspc1	88	67.490	Nannospalax_galili
ENSMAMG00000004333	pspc1	76	80.311	ENSNBRG00000014059	pspc1	92	79.534	Neolamprologus_brichardi
ENSMAMG00000004333	pspc1	77	71.628	ENSNLEG00000001294	PSPC1	88	67.629	Nomascus_leucogenys
ENSMAMG00000004333	pspc1	78	50.913	ENSMEUG00000000476	PSPC1	76	73.232	Notamacropus_eugenii
ENSMAMG00000004333	pspc1	87	57.113	ENSODEG00000007817	-	90	60.377	Octodon_degus
ENSMAMG00000004333	pspc1	87	59.188	ENSODEG00000019012	-	91	62.222	Octodon_degus
ENSMAMG00000004333	pspc1	100	82.863	ENSONIG00000012010	pspc1	99	83.239	Oreochromis_niloticus
ENSMAMG00000004333	pspc1	85	53.103	ENSOANG00000011381	-	92	52.423	Ornithorhynchus_anatinus
ENSMAMG00000004333	pspc1	67	70.933	ENSOANG00000009017	-	100	66.430	Ornithorhynchus_anatinus
ENSMAMG00000004333	pspc1	89	61.715	ENSOCUG00000006153	PSPC1	88	67.423	Oryctolagus_cuniculus
ENSMAMG00000004333	pspc1	100	74.812	ENSORLG00000004232	-	100	75.330	Oryzias_latipes
ENSMAMG00000004333	pspc1	100	75.330	ENSORLG00020000578	PSPC1	100	75.330	Oryzias_latipes_hni
ENSMAMG00000004333	pspc1	100	74.812	ENSORLG00015017480	pspc1	100	75.330	Oryzias_latipes_hsok
ENSMAMG00000004333	pspc1	77	71.860	ENSOGAG00000012643	PSPC1	88	67.629	Otolemur_garnettii
ENSMAMG00000004333	pspc1	86	62.741	ENSOARG00000014163	PSPC1	95	65.631	Ovis_aries
ENSMAMG00000004333	pspc1	82	65.000	ENSPPAG00000009836	PSPC1	92	78.086	Pan_paniscus
ENSMAMG00000004333	pspc1	77	71.860	ENSPPRG00000008833	PSPC1	88	67.629	Panthera_pardus
ENSMAMG00000004333	pspc1	74	66.019	ENSPTIG00000016917	PSPC1	90	62.313	Panthera_tigris_altaica
ENSMAMG00000004333	pspc1	75	73.479	ENSPTRG00000005677	PSPC1	82	78.086	Pan_troglodytes
ENSMAMG00000004333	pspc1	77	71.395	ENSPANG00000001992	PSPC1	89	78.154	Papio_anubis
ENSMAMG00000004333	pspc1	100	66.544	ENSPKIG00000003578	pspc1	100	66.850	Paramormyrops_kingsleyae
ENSMAMG00000004333	pspc1	89	60.996	ENSPSIG00000005168	PSPC1	90	65.462	Pelodiscus_sinensis
ENSMAMG00000004333	pspc1	67	72.207	ENSPMGG00000015135	pspc1	98	72.753	Periophthalmus_magnuspinnatus
ENSMAMG00000004333	pspc1	77	71.395	ENSPEMG00000015214	Pspc1	88	67.216	Peromyscus_maniculatus_bairdii
ENSMAMG00000004333	pspc1	58	41.638	ENSPMAG00000004618	pspc1	85	43.011	Petromyzon_marinus
ENSMAMG00000004333	pspc1	82	69.584	ENSPCIG00000017680	PSPC1	88	67.835	Phascolarctos_cinereus
ENSMAMG00000004333	pspc1	99	76.181	ENSPFOG00000003362	pspc1	99	76.560	Poecilia_formosa
ENSMAMG00000004333	pspc1	78	51.157	ENSPLAG00000004407	-	53	53.704	Poecilia_latipinna
ENSMAMG00000004333	pspc1	100	75.978	ENSPLAG00000011540	pspc1	100	76.350	Poecilia_latipinna
ENSMAMG00000004333	pspc1	78	51.300	ENSPMEG00000001025	-	52	54.233	Poecilia_mexicana
ENSMAMG00000004333	pspc1	100	75.791	ENSPMEG00000008322	pspc1	100	76.164	Poecilia_mexicana
ENSMAMG00000004333	pspc1	100	75.047	ENSPREG00000007786	pspc1	100	75.419	Poecilia_reticulata
ENSMAMG00000004333	pspc1	77	71.163	ENSPPYG00000005186	PSPC1	85	73.449	Pongo_abelii
ENSMAMG00000004333	pspc1	88	64.330	ENSPCOG00000014364	PSPC1	88	63.711	Propithecus_coquereli
ENSMAMG00000004333	pspc1	88	66.392	ENSPVAG00000005036	PSPC1	89	66.392	Pteropus_vampyrus
ENSMAMG00000004333	pspc1	100	75.977	ENSPNYG00000008893	pspc1	100	76.367	Pundamilia_nyererei
ENSMAMG00000004333	pspc1	100	66.543	ENSPNAG00000016511	pspc1	100	67.096	Pygocentrus_nattereri
ENSMAMG00000004333	pspc1	87	62.047	ENSRNOG00000020782	Pspc1	86	72.953	Rattus_norvegicus
ENSMAMG00000004333	pspc1	83	68.996	ENSRBIG00000036057	PSPC1	91	78.086	Rhinopithecus_bieti
ENSMAMG00000004333	pspc1	83	68.996	ENSRROG00000036334	PSPC1	82	78.086	Rhinopithecus_roxellana
ENSMAMG00000004333	pspc1	77	62.162	ENSSBOG00000028172	PSPC1	90	77.536	Saimiri_boliviensis_boliviensis
ENSMAMG00000004333	pspc1	92	62.551	ENSSHAG00000004696	PSPC1	90	64.990	Sarcophilus_harrisii
ENSMAMG00000004333	pspc1	88	71.102	ENSSFOG00015001395	pspc1	99	73.431	Scleropages_formosus
ENSMAMG00000004333	pspc1	100	80.443	ENSSMAG00000001761	pspc1	100	79.705	Scophthalmus_maximus
ENSMAMG00000004333	pspc1	100	82.963	ENSSDUG00000010651	pspc1	100	85.185	Seriola_dumerili
ENSMAMG00000004333	pspc1	100	79.600	ENSSLDG00000004284	pspc1	100	80.400	Seriola_lalandi_dorsalis
ENSMAMG00000004333	pspc1	82	65.581	ENSSARG00000000888	PSPC1	89	64.163	Sorex_araneus
ENSMAMG00000004333	pspc1	90	59.034	ENSSPUG00000008550	PSPC1	89	60.768	Sphenodon_punctatus
ENSMAMG00000004333	pspc1	86	45.133	ENSSPUG00000001136	-	59	52.605	Sphenodon_punctatus
ENSMAMG00000004333	pspc1	100	84.181	ENSSPAG00000001921	pspc1	100	84.369	Stegastes_partitus
ENSMAMG00000004333	pspc1	77	71.628	ENSSSCG00000009569	PSPC1	84	77.778	Sus_scrofa
ENSMAMG00000004333	pspc1	80	70.091	ENSTGUG00000011295	PSPC1	100	66.395	Taeniopygia_guttata
ENSMAMG00000004333	pspc1	100	73.446	ENSTRUG00000011335	pspc1	100	72.693	Takifugu_rubripes
ENSMAMG00000004333	pspc1	98	71.923	ENSTNIG00000010358	pspc1	98	72.692	Tetraodon_nigroviridis
ENSMAMG00000004333	pspc1	88	58.737	ENSTBEG00000002361	PSPC1	88	57.884	Tupaia_belangeri
ENSMAMG00000004333	pspc1	86	67.789	ENSTTRG00000003343	PSPC1	89	67.423	Tursiops_truncatus
ENSMAMG00000004333	pspc1	55	78.893	ENSUAMG00000012309	PSPC1	82	79.371	Ursus_americanus
ENSMAMG00000004333	pspc1	93	60.161	ENSUMAG00000013993	PSPC1	91	77.778	Ursus_maritimus
ENSMAMG00000004333	pspc1	66	72.011	ENSVPAG00000010029	PSPC1	100	66.903	Vicugna_pacos
ENSMAMG00000004333	pspc1	87	62.260	ENSVVUG00000006414	PSPC1	84	78.086	Vulpes_vulpes
ENSMAMG00000004333	pspc1	73	78.372	ENSXCOG00000017438	pspc1	93	78.117	Xiphophorus_couchianus
ENSMAMG00000004333	pspc1	73	78.626	ENSXMAG00000007929	pspc1	93	78.372	Xiphophorus_maculatus