EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000004406 (Gene tree)
Gene ID: 113131235
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein Q
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 6966 bases
Position: chrOOHQ01000014.1:950393-957358
Accession: 113131235
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000006482	RRM_1	PF00076.22	4.4e-43	1	3
ENSMAMP00000006482	RRM_1	PF00076.22	4.4e-43	2	3
ENSMAMP00000006482	RRM_1	PF00076.22	4.4e-43	3	3
ENSMAMP00000006464	RRM_1	PF00076.22	4.6e-43	1	3
ENSMAMP00000006464	RRM_1	PF00076.22	4.6e-43	2	3
ENSMAMP00000006464	RRM_1	PF00076.22	4.6e-43	3	3
ENSMAMP00000006506	RRM_1	PF00076.22	1.5e-38	1	3
ENSMAMP00000006506	RRM_1	PF00076.22	1.5e-38	2	3
ENSMAMP00000006506	RRM_1	PF00076.22	1.5e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000006647	-	2428	-	ENSMAMP00000006464	620 (aa)	XP_026164063	UPI000E4559B0
ENSMAMT00000006665	-	2945	-	ENSMAMP00000006482	613 (aa)	XP_026164067	UPI000E462FE8
ENSMAMT00000006690	-	1878	-	ENSMAMP00000006506	625 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000004406's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004406's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000004406	-	99	71.661	ENSMAMG00000001632	hnrnpr	69	78.140
ENSMAMG00000004406	-	50	51.780	ENSMAMG00000019143	rbm47	56	51.987
ENSMAMG00000004406	-	90	87.067	ENSMAMG00000007903	syncripl	78	92.019

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004406	-	77	76.190	ENSCHIG00000025862	-	78	86.842	Capra_hircus
ENSMAMG00000004406	-	77	54.149	FBgn0038826	Syp	75	60.349	Drosophila_melanogaster
ENSMAMG00000004406	-	75	85.000	ENSGMOG00000002822	-	74	85.000	Gadus_morhua
ENSMAMG00000004406	-	84	52.523	ENSGGOG00000036671	-	61	61.774	Gorilla_gorilla
ENSMAMG00000004406	-	84	52.652	ENSODEG00000005445	-	73	83.607	Octodon_degus
ENSMAMG00000004406	-	91	62.281	ENSODEG00000004900	-	64	76.819	Octodon_degus
ENSMAMG00000004406	-	99	61.889	ENSPCOG00000014665	-	69	65.236	Propithecus_coquereli
ENSMAMG00000004406	-	99	86.423	ENSTGUG00000012478	-	51	95.074	Taeniopygia_guttata
ENSMAMG00000004406	-	99	68.831	ENSTBEG00000002251	-	68	74.478	Tupaia_belangeri
ENSMAMG00000004406	-	86	88.800	ENSTTRG00000004471	-	54	93.780	Tursiops_truncatus
ENSMAMG00000004406	-	86	75.000	ENSTTRG00000007752	-	61	75.000	Tursiops_truncatus
ENSMAMG00000004406	-	75	90.000	ENSVPAG00000006411	-	72	90.000	Vicugna_pacos