EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000004532 (Gene tree)
Gene ID: 113127063
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 39688 bases
Position: chrOOHQ01000099.1:2131327-2171014
Accession: 113127063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000006776	R3H	PF01424.22	1.1e-12	1	1
ENSMAMP00000006879	R3H	PF01424.22	1.1e-12	1	1
ENSMAMP00000006820	R3H	PF01424.22	1.2e-12	1	1
ENSMAMP00000006701	R3H	PF01424.22	1.3e-12	1	1
ENSMAMP00000006748	R3H	PF01424.22	1.3e-12	1	1
ENSMAMP00000006654	R3H	PF01424.22	1.3e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000007008	-	5090	-	ENSMAMP00000006820	997 (aa)	-	-
ENSMAMT00000006886	-	5198	-	ENSMAMP00000006701	1033 (aa)	-	-
ENSMAMT00000006962	-	5108	-	ENSMAMP00000006776	1003 (aa)	-	-
ENSMAMT00000006934	-	5120	-	ENSMAMP00000006748	1007 (aa)	-	-
ENSMAMT00000007067	-	4657	-	ENSMAMP00000006879	1003 (aa)	-	-
ENSMAMT00000006839	-	5216	-	ENSMAMP00000006654	1039 (aa)	XP_026157048	UPI000E45F1D7

Gene Model

Click here to download ENSMAMG00000004532's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004532's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000004532	r3hdm1	77	62.455	ENSMAMG00000009793	r3hdm2	83	55.764
ENSMAMG00000004532	r3hdm1	54	37.193	ENSMAMG00000011755	-	68	45.531

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004532	r3hdm1	91	57.635	ENSG00000048991	R3HDM1	97	65.248	Homo_sapiens
ENSMAMG00000004532	r3hdm1	100	88.868	ENSAPOG00000020850	r3hdm1	96	88.868	Acanthochromis_polyacanthus
ENSMAMG00000004532	r3hdm1	93	54.598	ENSAMEG00000014886	R3HDM1	89	48.946	Ailuropoda_melanoleuca
ENSMAMG00000004532	r3hdm1	100	87.859	ENSAOCG00000005192	r3hdm1	100	88.145	Amphiprion_ocellaris
ENSMAMG00000004532	r3hdm1	100	87.068	ENSAPEG00000016108	r3hdm1	100	87.364	Amphiprion_percula
ENSMAMG00000004532	r3hdm1	100	88.668	ENSATEG00000000232	r3hdm1	100	88.668	Anabas_testudineus
ENSMAMG00000004532	r3hdm1	99	48.335	ENSAPLG00000015231	R3HDM1	89	49.182	Anas_platyrhynchos
ENSMAMG00000004532	r3hdm1	99	48.706	ENSACAG00000001676	R3HDM1	89	49.309	Anolis_carolinensis
ENSMAMG00000004532	r3hdm1	91	57.635	ENSANAG00000035334	R3HDM1	87	62.466	Aotus_nancymaae
ENSMAMG00000004532	r3hdm1	100	82.766	ENSACLG00000027282	r3hdm1	100	82.766	Astatotilapia_calliptera
ENSMAMG00000004532	r3hdm1	87	71.296	ENSAMXG00000003536	r3hdm1	81	70.774	Astyanax_mexicanus
ENSMAMG00000004532	r3hdm1	57	36.469	ENSAMXG00000020587	arpp21	69	35.727	Astyanax_mexicanus
ENSMAMG00000004532	r3hdm1	86	71.429	ENSAMXG00000012861	R3HDM1	89	62.954	Astyanax_mexicanus
ENSMAMG00000004532	r3hdm1	99	49.162	ENSBTAG00000013302	R3HDM1	89	49.445	Bos_taurus
ENSMAMG00000004532	r3hdm1	91	57.389	ENSCJAG00000011718	R3HDM1	87	62.198	Callithrix_jacchus
ENSMAMG00000004532	r3hdm1	93	58.429	ENSCAFG00000005075	R3HDM1	89	48.706	Canis_familiaris
ENSMAMG00000004532	r3hdm1	92	58.429	ENSCAFG00020016119	R3HDM1	92	58.301	Canis_lupus_dingo
ENSMAMG00000004532	r3hdm1	99	49.162	ENSCHIG00000020851	R3HDM1	89	49.628	Capra_hircus
ENSMAMG00000004532	r3hdm1	99	47.349	ENSCPOG00000012784	R3HDM1	100	61.092	Cavia_porcellus
ENSMAMG00000004532	r3hdm1	91	56.897	ENSCCAG00000027199	R3HDM1	87	61.662	Cebus_capucinus
ENSMAMG00000004532	r3hdm1	93	59.004	ENSCATG00000023642	R3HDM1	87	62.466	Cercocebus_atys
ENSMAMG00000004532	r3hdm1	99	47.335	ENSCLAG00000007962	R3HDM1	100	63.481	Chinchilla_lanigera
ENSMAMG00000004532	r3hdm1	99	47.606	ENSCSAG00000016356	R3HDM1	89	48.479	Chlorocebus_sabaeus
ENSMAMG00000004532	r3hdm1	77	64.341	ENSCHOG00000013638	R3HDM1	68	64.341	Choloepus_hoffmanni
ENSMAMG00000004532	r3hdm1	82	69.784	ENSCPBG00000009645	R3HDM1	86	69.784	Chrysemys_picta_bellii
ENSMAMG00000004532	r3hdm1	93	58.812	ENSCANG00000034748	R3HDM1	87	62.198	Colobus_angolensis_palliatus
ENSMAMG00000004532	r3hdm1	99	48.004	ENSCGRG00001012357	R3hdm1	86	48.026	Cricetulus_griseus_chok1gshd
ENSMAMG00000004532	r3hdm1	92	58.969	ENSCGRG00000012080	R3hdm1	100	65.188	Cricetulus_griseus_crigri
ENSMAMG00000004532	r3hdm1	100	70.315	ENSCSEG00000008944	r3hdm1	100	71.548	Cynoglossus_semilaevis
ENSMAMG00000004532	r3hdm1	100	80.211	ENSCVAG00000007582	r3hdm1	100	80.307	Cyprinodon_variegatus
ENSMAMG00000004532	r3hdm1	92	55.660	ENSDNOG00000000771	R3HDM1	89	47.373	Dasypus_novemcinctus
ENSMAMG00000004532	r3hdm1	78	58.185	ENSETEG00000013606	R3HDM1	81	53.025	Echinops_telfairi
ENSMAMG00000004532	r3hdm1	91	60.859	ENSEASG00005007392	R3HDM1	88	60.859	Equus_asinus_asinus
ENSMAMG00000004532	r3hdm1	91	60.859	ENSECAG00000019114	R3HDM1	88	60.859	Equus_caballus
ENSMAMG00000004532	r3hdm1	58	53.167	ENSEEUG00000012589	R3HDM1	54	52.591	Erinaceus_europaeus
ENSMAMG00000004532	r3hdm1	93	51.449	ENSELUG00000014413	r3hdm1	86	52.223	Esox_lucius
ENSMAMG00000004532	r3hdm1	96	51.393	ENSELUG00000004909	R3HDM1	86	52.053	Esox_lucius
ENSMAMG00000004532	r3hdm1	91	60.911	ENSFCAG00000027113	R3HDM1	88	60.911	Felis_catus
ENSMAMG00000004532	r3hdm1	84	49.503	ENSFALG00000013731	R3HDM1	90	45.079	Ficedula_albicollis
ENSMAMG00000004532	r3hdm1	99	47.930	ENSFDAG00000016478	R3HDM1	100	64.505	Fukomys_damarensis
ENSMAMG00000004532	r3hdm1	100	80.362	ENSFHEG00000018713	r3hdm1	100	80.553	Fundulus_heteroclitus
ENSMAMG00000004532	r3hdm1	67	63.848	ENSGMOG00000006042	-	79	56.775	Gadus_morhua
ENSMAMG00000004532	r3hdm1	87	60.477	ENSGALG00000012246	R3HDM1	84	64.803	Gallus_gallus
ENSMAMG00000004532	r3hdm1	100	74.303	ENSGAFG00000006203	r3hdm1	100	75.000	Gambusia_affinis
ENSMAMG00000004532	r3hdm1	95	82.175	ENSGACG00000014925	r3hdm1	95	82.276	Gasterosteus_aculeatus
ENSMAMG00000004532	r3hdm1	85	66.774	ENSGAGG00000007840	R3HDM1	84	60.294	Gopherus_agassizii
ENSMAMG00000004532	r3hdm1	91	57.635	ENSGGOG00000008156	R3HDM1	87	62.466	Gorilla_gorilla
ENSMAMG00000004532	r3hdm1	55	85.199	ENSHBUG00000015737	R3HDM1	96	87.175	Haplochromis_burtoni
ENSMAMG00000004532	r3hdm1	99	48.378	ENSHGLG00000015718	R3HDM1	100	64.846	Heterocephalus_glaber_female
ENSMAMG00000004532	r3hdm1	99	48.285	ENSHGLG00100003184	-	100	65.188	Heterocephalus_glaber_male
ENSMAMG00000004532	r3hdm1	83	47.983	ENSHGLG00100015374	-	91	38.499	Heterocephalus_glaber_male
ENSMAMG00000004532	r3hdm1	100	70.010	ENSHCOG00000013366	r3hdm1	100	70.010	Hippocampus_comes
ENSMAMG00000004532	r3hdm1	84	69.329	ENSIPUG00000013629	r3hdm1	82	68.371	Ictalurus_punctatus
ENSMAMG00000004532	r3hdm1	87	68.997	ENSIPUG00000001676	R3HDM1	100	62.716	Ictalurus_punctatus
ENSMAMG00000004532	r3hdm1	99	48.790	ENSSTOG00000007572	R3HDM1	100	64.846	Ictidomys_tridecemlineatus
ENSMAMG00000004532	r3hdm1	91	61.939	ENSLACG00000005334	R3HDM1	89	61.229	Latimeria_chalumnae
ENSMAMG00000004532	r3hdm1	99	51.257	ENSLOCG00000001641	r3hdm1	90	51.763	Lepisosteus_oculatus
ENSMAMG00000004532	r3hdm1	86	66.254	ENSLAFG00000009065	R3HDM1	86	66.011	Loxodonta_africana
ENSMAMG00000004532	r3hdm1	91	61.391	ENSMFAG00000030331	R3HDM1	87	62.466	Macaca_fascicularis
ENSMAMG00000004532	r3hdm1	92	58.812	ENSMMUG00000009844	R3HDM1	87	62.466	Macaca_mulatta
ENSMAMG00000004532	r3hdm1	91	61.391	ENSMNEG00000027793	R3HDM1	87	62.466	Macaca_nemestrina
ENSMAMG00000004532	r3hdm1	93	59.004	ENSMLEG00000043189	R3HDM1	87	62.466	Mandrillus_leucophaeus
ENSMAMG00000004532	r3hdm1	100	86.273	ENSMZEG00005003157	r3hdm1	100	86.273	Maylandia_zebra
ENSMAMG00000004532	r3hdm1	96	48.913	ENSMGAG00000012461	R3HDM1	88	48.942	Meleagris_gallopavo
ENSMAMG00000004532	r3hdm1	99	48.656	ENSMAUG00000010315	R3hdm1	100	65.188	Mesocricetus_auratus
ENSMAMG00000004532	r3hdm1	92	58.812	ENSMICG00000005900	-	87	62.466	Microcebus_murinus
ENSMAMG00000004532	r3hdm1	91	57.389	ENSMICG00000042655	-	92	62.198	Microcebus_murinus
ENSMAMG00000004532	r3hdm1	50	58.588	ENSMOCG00000019833	-	100	64.846	Microtus_ochrogaster
ENSMAMG00000004532	r3hdm1	99	46.649	ENSMODG00000000923	R3HDM1	96	46.320	Monodelphis_domestica
ENSMAMG00000004532	r3hdm1	100	88.008	ENSMALG00000009000	r3hdm1	90	87.911	Monopterus_albus
ENSMAMG00000004532	r3hdm1	99	47.232	MGP_CAROLIEiJ_G0014543	R3hdm1	100	65.188	Mus_caroli
ENSMAMG00000004532	r3hdm1	99	47.398	ENSMUSG00000056211	R3hdm1	100	65.188	Mus_musculus
ENSMAMG00000004532	r3hdm1	99	46.728	MGP_PahariEiJ_G0027779	R3hdm1	100	65.188	Mus_pahari
ENSMAMG00000004532	r3hdm1	99	47.097	MGP_SPRETEiJ_G0015350	R3hdm1	100	65.188	Mus_spretus
ENSMAMG00000004532	r3hdm1	93	58.621	ENSMPUG00000002412	R3HDM1	89	49.136	Mustela_putorius_furo
ENSMAMG00000004532	r3hdm1	99	48.184	ENSMLUG00000013824	R3HDM1	89	48.427	Myotis_lucifugus
ENSMAMG00000004532	r3hdm1	93	59.004	ENSNLEG00000008622	R3HDM1	87	62.466	Nomascus_leucogenys
ENSMAMG00000004532	r3hdm1	94	42.897	ENSMEUG00000011784	R3HDM1	93	42.976	Notamacropus_eugenii
ENSMAMG00000004532	r3hdm1	99	47.393	ENSODEG00000008607	R3HDM1	100	64.164	Octodon_degus
ENSMAMG00000004532	r3hdm1	95	83.625	ENSONIG00000012017	r3hdm1	89	83.625	Oreochromis_niloticus
ENSMAMG00000004532	r3hdm1	99	46.782	ENSOANG00000007987	R3HDM1	89	47.514	Ornithorhynchus_anatinus
ENSMAMG00000004532	r3hdm1	92	58.621	ENSOCUG00000017366	R3HDM1	97	48.851	Oryctolagus_cuniculus
ENSMAMG00000004532	r3hdm1	100	74.928	ENSORLG00000004297	r3hdm1	100	75.313	Oryzias_latipes
ENSMAMG00000004532	r3hdm1	100	75.000	ENSORLG00015017355	r3hdm1	100	75.400	Oryzias_latipes_hsok
ENSMAMG00000004532	r3hdm1	52	81.154	ENSOMEG00000003882	-	97	81.731	Oryzias_melastigma
ENSMAMG00000004532	r3hdm1	93	55.385	ENSOGAG00000003136	R3HDM1	89	48.846	Otolemur_garnettii
ENSMAMG00000004532	r3hdm1	99	49.031	ENSOARG00000010788	R3HDM1	89	49.516	Ovis_aries
ENSMAMG00000004532	r3hdm1	91	57.635	ENSPPAG00000027858	R3HDM1	87	62.466	Pan_paniscus
ENSMAMG00000004532	r3hdm1	91	57.143	ENSPPRG00000002626	R3HDM1	87	61.930	Panthera_pardus
ENSMAMG00000004532	r3hdm1	91	57.389	ENSPTIG00000016581	R3HDM1	87	62.198	Panthera_tigris_altaica
ENSMAMG00000004532	r3hdm1	91	57.635	ENSPTRG00000012494	R3HDM1	87	62.466	Pan_troglodytes
ENSMAMG00000004532	r3hdm1	93	59.004	ENSPANG00000026448	R3HDM1	87	62.466	Papio_anubis
ENSMAMG00000004532	r3hdm1	85	74.342	ENSPKIG00000004328	r3hdm1	78	73.355	Paramormyrops_kingsleyae
ENSMAMG00000004532	r3hdm1	99	47.919	ENSPSIG00000012915	R3HDM1	88	48.750	Pelodiscus_sinensis
ENSMAMG00000004532	r3hdm1	99	47.286	ENSPEMG00000015187	R3hdm1	100	65.188	Peromyscus_maniculatus_bairdii
ENSMAMG00000004532	r3hdm1	95	38.476	ENSPMAG00000003369	-	94	39.524	Petromyzon_marinus
ENSMAMG00000004532	r3hdm1	91	59.382	ENSPCIG00000002491	R3HDM1	88	59.382	Phascolarctos_cinereus
ENSMAMG00000004532	r3hdm1	100	79.314	ENSPFOG00000015036	r3hdm1	100	79.314	Poecilia_formosa
ENSMAMG00000004532	r3hdm1	100	75.348	ENSPLAG00000018042	r3hdm1	100	75.348	Poecilia_latipinna
ENSMAMG00000004532	r3hdm1	100	75.273	ENSPMEG00000023947	r3hdm1	100	75.273	Poecilia_mexicana
ENSMAMG00000004532	r3hdm1	100	78.585	ENSPREG00000007902	r3hdm1	100	78.872	Poecilia_reticulata
ENSMAMG00000004532	r3hdm1	92	57.744	ENSPPYG00000012815	R3HDM1	89	47.751	Pongo_abelii
ENSMAMG00000004532	r3hdm1	93	59.226	ENSPCAG00000006208	R3HDM1	82	59.050	Procavia_capensis
ENSMAMG00000004532	r3hdm1	92	56.538	ENSPCOG00000012698	R3HDM1	87	60.000	Propithecus_coquereli
ENSMAMG00000004532	r3hdm1	92	54.598	ENSPVAG00000006098	R3HDM1	89	43.145	Pteropus_vampyrus
ENSMAMG00000004532	r3hdm1	64	49.640	ENSPNAG00000004162	arpp21	92	44.077	Pygocentrus_nattereri
ENSMAMG00000004532	r3hdm1	83	69.906	ENSPNAG00000005436	R3HDM1	87	70.550	Pygocentrus_nattereri
ENSMAMG00000004532	r3hdm1	83	72.930	ENSPNAG00000013952	r3hdm1	84	67.553	Pygocentrus_nattereri
ENSMAMG00000004532	r3hdm1	99	46.820	ENSRNOG00000004099	R3hdm1	89	47.330	Rattus_norvegicus
ENSMAMG00000004532	r3hdm1	78	71.739	ENSRBIG00000033317	R3HDM1	86	71.739	Rhinopithecus_bieti
ENSMAMG00000004532	r3hdm1	92	59.623	ENSRROG00000034534	R3HDM1	87	62.466	Rhinopithecus_roxellana
ENSMAMG00000004532	r3hdm1	91	57.143	ENSSBOG00000020389	R3HDM1	87	61.930	Saimiri_boliviensis_boliviensis
ENSMAMG00000004532	r3hdm1	92	57.884	ENSSHAG00000016999	R3HDM1	89	47.927	Sarcophilus_harrisii
ENSMAMG00000004532	r3hdm1	86	72.611	ENSSFOG00015014134	r3hdm1	88	64.548	Scleropages_formosus
ENSMAMG00000004532	r3hdm1	100	49.807	ENSSFOG00015019851	-	93	55.556	Scleropages_formosus
ENSMAMG00000004532	r3hdm1	100	80.607	ENSSMAG00000001669	r3hdm1	90	80.607	Scophthalmus_maximus
ENSMAMG00000004532	r3hdm1	100	85.785	ENSSDUG00000010749	r3hdm1	100	86.278	Seriola_dumerili
ENSMAMG00000004532	r3hdm1	100	87.363	ENSSLDG00000004499	r3hdm1	90	87.761	Seriola_lalandi_dorsalis
ENSMAMG00000004532	r3hdm1	55	53.094	ENSSARG00000000352	-	52	53.094	Sorex_araneus
ENSMAMG00000004532	r3hdm1	99	47.909	ENSSPUG00000004167	R3HDM1	88	49.229	Sphenodon_punctatus
ENSMAMG00000004532	r3hdm1	100	88.142	ENSSPAG00000004648	r3hdm1	100	88.142	Stegastes_partitus
ENSMAMG00000004532	r3hdm1	91	59.409	ENSSSCG00000015692	R3HDM1	87	59.409	Sus_scrofa
ENSMAMG00000004532	r3hdm1	96	48.800	ENSTGUG00000011750	R3HDM1	89	48.266	Taeniopygia_guttata
ENSMAMG00000004532	r3hdm1	100	77.734	ENSTRUG00000011654	r3hdm1	99	77.734	Takifugu_rubripes
ENSMAMG00000004532	r3hdm1	98	72.189	ENSTNIG00000010362	r3hdm1	99	72.636	Tetraodon_nigroviridis
ENSMAMG00000004532	r3hdm1	86	63.196	ENSTTRG00000003935	R3HDM1	89	45.684	Tursiops_truncatus
ENSMAMG00000004532	r3hdm1	79	51.043	ENSUAMG00000024806	R3HDM1	93	62.198	Ursus_americanus
ENSMAMG00000004532	r3hdm1	91	57.389	ENSUMAG00000005552	R3HDM1	87	62.198	Ursus_maritimus
ENSMAMG00000004532	r3hdm1	79	63.089	ENSVPAG00000007333	R3HDM1	73	50.292	Vicugna_pacos
ENSMAMG00000004532	r3hdm1	91	62.198	ENSVVUG00000006457	R3HDM1	88	62.198	Vulpes_vulpes
ENSMAMG00000004532	r3hdm1	87	60.628	ENSXETG00000019330	r3hdm1	99	44.765	Xenopus_tropicalis
ENSMAMG00000004532	r3hdm1	79	70.301	ENSXCOG00000017448	r3hdm1	93	75.265	Xiphophorus_couchianus
ENSMAMG00000004532	r3hdm1	100	78.065	ENSXMAG00000007885	r3hdm1	100	78.831	Xiphophorus_maculatus