EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000004623 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12999 bases
Position: chrOOHQ01000035.1:9924410-9937408
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000007059	ResIII	PF04851.15	1.7e-11	1	1
ENSMAMP00000006956	ResIII	PF04851.15	1e-10	1	1
ENSMAMP00000007035	ResIII	PF04851.15	1.4e-06	1	1
ENSMAMP00000007059	DEAD	PF00270.29	2.4e-28	1	1
ENSMAMP00000006956	DEAD	PF00270.29	1.1e-27	1	1
ENSMAMP00000007035	DEAD	PF00270.29	7.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000007232	-	2433	-	ENSMAMP00000007035	811 (aa)	-	-
ENSMAMT00000007147	-	2649	-	ENSMAMP00000006956	882 (aa)	-	-
ENSMAMT00000007256	-	867	-	ENSMAMP00000007059	288 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000004623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004623's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000004623	hfm1	78	32.540	ENSMAMG00000005917	ascc3	58	32.540
ENSMAMG00000004623	hfm1	88	31.099	ENSMAMG00000007851	snrnp200	69	31.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004623	hfm1	97	66.908	ENSG00000162669	HFM1	54	70.641	Homo_sapiens
ENSMAMG00000004623	hfm1	100	84.112	ENSAPOG00000005304	hfm1	99	84.112	Acanthochromis_polyacanthus
ENSMAMG00000004623	hfm1	98	66.108	ENSAMEG00000000432	HFM1	56	68.272	Ailuropoda_melanoleuca
ENSMAMG00000004623	hfm1	97	83.942	ENSACIG00000021553	hfm1	82	82.399	Amphilophus_citrinellus
ENSMAMG00000004623	hfm1	100	84.750	ENSAOCG00000022839	hfm1	99	84.750	Amphiprion_ocellaris
ENSMAMG00000004623	hfm1	100	85.047	ENSAPEG00000014316	hfm1	99	85.047	Amphiprion_percula
ENSMAMG00000004623	hfm1	93	91.299	ENSATEG00000019181	hfm1	68	91.299	Anabas_testudineus
ENSMAMG00000004623	hfm1	97	66.104	ENSAPLG00000013639	HFM1	54	70.128	Anas_platyrhynchos
ENSMAMG00000004623	hfm1	97	65.621	ENSANAG00000029513	HFM1	62	64.409	Aotus_nancymaae
ENSMAMG00000004623	hfm1	99	85.455	ENSACLG00000009033	hfm1	100	85.455	Astatotilapia_calliptera
ENSMAMG00000004623	hfm1	91	90.000	ENSAMXG00000006108	hfm1	55	90.000	Astyanax_mexicanus
ENSMAMG00000004623	hfm1	97	66.908	ENSBTAG00000020856	HFM1	54	70.475	Bos_taurus
ENSMAMG00000004623	hfm1	97	66.184	ENSCJAG00000001843	HFM1	58	66.184	Callithrix_jacchus
ENSMAMG00000004623	hfm1	97	66.264	ENSCAFG00000020187	HFM1	54	69.794	Canis_familiaris
ENSMAMG00000004623	hfm1	99	70.202	ENSTSYG00000014250	HFM1	58	66.063	Carlito_syrichta
ENSMAMG00000004623	hfm1	97	65.538	ENSCPOG00000007421	HFM1	56	69.409	Cavia_porcellus
ENSMAMG00000004623	hfm1	97	65.821	ENSCCAG00000033206	HFM1	58	65.821	Cebus_capucinus
ENSMAMG00000004623	hfm1	97	71.357	ENSCATG00000030987	HFM1	54	70.603	Cercocebus_atys
ENSMAMG00000004623	hfm1	97	66.461	ENSCLAG00000005173	HFM1	55	66.461	Chinchilla_lanigera
ENSMAMG00000004623	hfm1	81	49.930	ENSCSAVG00000005094	-	100	51.671	Ciona_savignyi
ENSMAMG00000004623	hfm1	88	72.362	ENSCANG00000034052	-	54	72.362	Colobus_angolensis_palliatus
ENSMAMG00000004623	hfm1	94	62.687	ENSCGRG00001016995	Hfm1	55	64.789	Cricetulus_griseus_chok1gshd
ENSMAMG00000004623	hfm1	97	64.734	ENSCGRG00000017181	Hfm1	56	67.293	Cricetulus_griseus_crigri
ENSMAMG00000004623	hfm1	97	80.680	ENSCSEG00000017659	hfm1	74	84.487	Cynoglossus_semilaevis
ENSMAMG00000004623	hfm1	81	83.966	ENSCVAG00000005075	hfm1	86	83.966	Cyprinodon_variegatus
ENSMAMG00000004623	hfm1	97	73.366	ENSDARG00000104288	hfm1	75	73.366	Danio_rerio
ENSMAMG00000004623	hfm1	97	65.777	ENSDNOG00000004776	HFM1	52	69.806	Dasypus_novemcinctus
ENSMAMG00000004623	hfm1	97	64.024	ENSDORG00000014661	Hfm1	55	67.714	Dipodomys_ordii
ENSMAMG00000004623	hfm1	68	62.189	ENSEBUG00000006133	-	89	64.858	Eptatretus_burgeri
ENSMAMG00000004623	hfm1	94	66.625	ENSEASG00005015424	HFM1	84	66.389	Equus_asinus_asinus
ENSMAMG00000004623	hfm1	97	66.546	ENSECAG00000024039	HFM1	53	70.218	Equus_caballus
ENSMAMG00000004623	hfm1	100	76.601	ENSELUG00000018944	hfm1	98	76.601	Esox_lucius
ENSMAMG00000004623	hfm1	97	65.942	ENSFCAG00000029116	HFM1	54	69.448	Felis_catus
ENSMAMG00000004623	hfm1	97	66.345	ENSFALG00000001781	HFM1	55	70.128	Ficedula_albicollis
ENSMAMG00000004623	hfm1	97	66.063	ENSFDAG00000020816	HFM1	56	66.063	Fukomys_damarensis
ENSMAMG00000004623	hfm1	97	73.325	ENSGMOG00000017436	hfm1	85	73.325	Gadus_morhua
ENSMAMG00000004623	hfm1	99	78.911	ENSGAFG00000018093	hfm1	100	78.563	Gambusia_affinis
ENSMAMG00000004623	hfm1	97	80.732	ENSGACG00000015686	hfm1	83	84.123	Gasterosteus_aculeatus
ENSMAMG00000004623	hfm1	100	57.807	ENSGAGG00000025197	-	89	57.807	Gopherus_agassizii
ENSMAMG00000004623	hfm1	97	71.357	ENSGGOG00000038524	HFM1	54	70.475	Gorilla_gorilla
ENSMAMG00000004623	hfm1	98	82.198	ENSHBUG00000007309	hfm1	83	81.393	Haplochromis_burtoni
ENSMAMG00000004623	hfm1	99	83.271	ENSHCOG00000019632	hfm1	100	83.271	Hippocampus_comes
ENSMAMG00000004623	hfm1	92	80.769	ENSIPUG00000017020	hfm1	91	74.751	Ictalurus_punctatus
ENSMAMG00000004623	hfm1	97	64.976	ENSJJAG00000017198	Hfm1	56	68.421	Jaculus_jaculus
ENSMAMG00000004623	hfm1	97	81.655	ENSKMAG00000002282	hfm1	92	78.062	Kryptolebias_marmoratus
ENSMAMG00000004623	hfm1	100	86.941	ENSLBEG00000006759	hfm1	99	86.941	Labrus_bergylta
ENSMAMG00000004623	hfm1	97	67.587	ENSLACG00000010698	HFM1	78	67.707	Latimeria_chalumnae
ENSMAMG00000004623	hfm1	97	72.256	ENSLOCG00000004931	hfm1	72	76.953	Lepisosteus_oculatus
ENSMAMG00000004623	hfm1	76	71.833	ENSLAFG00000015903	-	90	71.833	Loxodonta_africana
ENSMAMG00000004623	hfm1	97	71.357	ENSMFAG00000003649	HFM1	57	64.364	Macaca_fascicularis
ENSMAMG00000004623	hfm1	97	71.357	ENSMMUG00000006819	HFM1	54	70.475	Macaca_mulatta
ENSMAMG00000004623	hfm1	97	72.362	ENSMNEG00000039833	-	62	72.362	Macaca_nemestrina
ENSMAMG00000004623	hfm1	97	72.362	ENSMLEG00000027571	-	62	72.362	Mandrillus_leucophaeus
ENSMAMG00000004623	hfm1	99	85.455	ENSMZEG00005004679	hfm1	100	85.455	Maylandia_zebra
ENSMAMG00000004623	hfm1	90	65.319	ENSMGAG00000008437	HFM1	95	65.319	Meleagris_gallopavo
ENSMAMG00000004623	hfm1	99	71.212	ENSMAUG00000018858	Hfm1	55	67.378	Mesocricetus_auratus
ENSMAMG00000004623	hfm1	97	66.224	ENSMICG00000037935	HFM1	54	70.142	Microcebus_murinus
ENSMAMG00000004623	hfm1	97	65.054	ENSMOCG00000014812	Hfm1	58	65.054	Microtus_ochrogaster
ENSMAMG00000004623	hfm1	100	83.935	ENSMMOG00000006148	hfm1	99	83.935	Mola_mola
ENSMAMG00000004623	hfm1	100	87.279	ENSMALG00000002401	hfm1	99	87.279	Monopterus_albus
ENSMAMG00000004623	hfm1	88	71.186	MGP_CAROLIEiJ_G0027496	Hfm1	53	71.186	Mus_caroli
ENSMAMG00000004623	hfm1	97	64.933	ENSMUSG00000043410	Hfm1	55	67.754	Mus_musculus
ENSMAMG00000004623	hfm1	97	65.054	MGP_PahariEiJ_G0017268	Hfm1	54	69.023	Mus_pahari
ENSMAMG00000004623	hfm1	97	65.417	MGP_SPRETEiJ_G0028495	Hfm1	55	68.381	Mus_spretus
ENSMAMG00000004623	hfm1	97	66.063	ENSMPUG00000004594	HFM1	56	66.063	Mustela_putorius_furo
ENSMAMG00000004623	hfm1	97	65.700	ENSMLUG00000010200	HFM1	54	69.063	Myotis_lucifugus
ENSMAMG00000004623	hfm1	99	86.152	ENSNBRG00000002910	hfm1	100	86.152	Neolamprologus_brichardi
ENSMAMG00000004623	hfm1	97	65.538	ENSNLEG00000010285	HFM1	57	65.538	Nomascus_leucogenys
ENSMAMG00000004623	hfm1	88	62.667	ENSMEUG00000015788	HFM1	51	62.667	Notamacropus_eugenii
ENSMAMG00000004623	hfm1	97	61.017	ENSOPRG00000013916	HFM1	58	61.017	Ochotona_princeps
ENSMAMG00000004623	hfm1	93	89.172	ENSONIG00000010590	hfm1	78	89.172	Oreochromis_niloticus
ENSMAMG00000004623	hfm1	96	83.079	ENSORLG00000026844	hfm1	99	83.079	Oryzias_latipes
ENSMAMG00000004623	hfm1	87	89.231	ENSORLG00020002951	hfm1	61	75.064	Oryzias_latipes_hni
ENSMAMG00000004623	hfm1	97	79.782	ENSOMEG00000016474	hfm1	54	84.872	Oryzias_melastigma
ENSMAMG00000004623	hfm1	98	70.352	ENSOGAG00000032369	HFM1	67	65.742	Otolemur_garnettii
ENSMAMG00000004623	hfm1	97	67.029	ENSOARG00000015812	HFM1	54	70.603	Ovis_aries
ENSMAMG00000004623	hfm1	97	67.150	ENSPPAG00000024582	HFM1	59	70.897	Pan_paniscus
ENSMAMG00000004623	hfm1	97	65.942	ENSPPRG00000003270	HFM1	54	69.448	Panthera_pardus
ENSMAMG00000004623	hfm1	97	65.942	ENSPTIG00000018881	HFM1	54	69.487	Panthera_tigris_altaica
ENSMAMG00000004623	hfm1	97	67.029	ENSPTRG00000000948	HFM1	54	70.769	Pan_troglodytes
ENSMAMG00000004623	hfm1	97	71.357	ENSPANG00000009838	HFM1	54	70.347	Papio_anubis
ENSMAMG00000004623	hfm1	99	72.401	ENSPKIG00000003810	hfm1	99	72.401	Paramormyrops_kingsleyae
ENSMAMG00000004623	hfm1	97	82.264	ENSPMGG00000011059	hfm1	99	82.264	Periophthalmus_magnuspinnatus
ENSMAMG00000004623	hfm1	97	64.933	ENSPEMG00000022852	Hfm1	55	67.503	Peromyscus_maniculatus_bairdii
ENSMAMG00000004623	hfm1	97	65.942	ENSPCIG00000014233	HFM1	55	67.407	Phascolarctos_cinereus
ENSMAMG00000004623	hfm1	97	81.477	ENSPFOG00000017194	hfm1	76	86.486	Poecilia_formosa
ENSMAMG00000004623	hfm1	97	81.356	ENSPLAG00000000571	hfm1	73	86.136	Poecilia_latipinna
ENSMAMG00000004623	hfm1	97	81.356	ENSPMEG00000019475	hfm1	74	86.136	Poecilia_mexicana
ENSMAMG00000004623	hfm1	97	81.114	ENSPREG00000007803	hfm1	100	78.513	Poecilia_reticulata
ENSMAMG00000004623	hfm1	97	66.908	ENSPPYG00000001163	HFM1	54	70.475	Pongo_abelii
ENSMAMG00000004623	hfm1	97	60.870	ENSPVAG00000009713	HFM1	59	60.870	Pteropus_vampyrus
ENSMAMG00000004623	hfm1	99	85.109	ENSPNYG00000001795	hfm1	100	85.109	Pundamilia_nyererei
ENSMAMG00000004623	hfm1	97	76.683	ENSPNAG00000010865	hfm1	82	76.683	Pygocentrus_nattereri
ENSMAMG00000004623	hfm1	97	65.054	ENSRNOG00000023299	Hfm1	55	67.754	Rattus_norvegicus
ENSMAMG00000004623	hfm1	88	71.859	ENSRBIG00000033899	-	54	71.859	Rhinopithecus_bieti
ENSMAMG00000004623	hfm1	97	66.546	ENSRROG00000045569	HFM1	54	70.603	Rhinopithecus_roxellana
ENSMAMG00000004623	hfm1	97	66.304	ENSSBOG00000027456	HFM1	59	66.304	Saimiri_boliviensis_boliviensis
ENSMAMG00000004623	hfm1	72	65.581	ENSSHAG00000014616	-	69	69.243	Sarcophilus_harrisii
ENSMAMG00000004623	hfm1	91	85.000	ENSSFOG00015020129	hfm1	52	78.691	Scleropages_formosus
ENSMAMG00000004623	hfm1	97	85.439	ENSSMAG00000006907	hfm1	90	81.937	Scophthalmus_maximus
ENSMAMG00000004623	hfm1	100	85.930	ENSSDUG00000011424	hfm1	99	85.930	Seriola_dumerili
ENSMAMG00000004623	hfm1	100	84.828	ENSSLDG00000016386	hfm1	99	84.828	Seriola_lalandi_dorsalis
ENSMAMG00000004623	hfm1	86	70.854	ENSSPUG00000003380	-	64	70.854	Sphenodon_punctatus
ENSMAMG00000004623	hfm1	100	84.070	ENSSPAG00000001023	hfm1	99	84.070	Stegastes_partitus
ENSMAMG00000004623	hfm1	97	67.029	ENSSSCG00000006912	HFM1	58	69.549	Sus_scrofa
ENSMAMG00000004623	hfm1	97	66.184	ENSTGUG00000006172	HFM1	86	66.184	Taeniopygia_guttata
ENSMAMG00000004623	hfm1	71	79.024	ENSTNIG00000006962	hfm1	98	82.218	Tetraodon_nigroviridis
ENSMAMG00000004623	hfm1	99	65.914	ENSTTRG00000013933	HFM1	55	70.090	Tursiops_truncatus
ENSMAMG00000004623	hfm1	97	64.010	ENSVPAG00000011331	HFM1	54	67.137	Vicugna_pacos
ENSMAMG00000004623	hfm1	95	66.255	ENSVVUG00000020760	HFM1	84	66.548	Vulpes_vulpes
ENSMAMG00000004623	hfm1	97	84.237	ENSXMAG00000004178	hfm1	91	84.237	Xiphophorus_maculatus