EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000004888 (Gene tree)
Gene ID: -
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 5256 bases
Position: chrOOHQ01000103.1:17492880-17498135
Accession: ZDB-GENE-030131-591
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000007838	RRM_1	PF00076.22	1.8e-31	1	2
ENSMAMP00000007838	RRM_1	PF00076.22	1.8e-31	2	2
ENSMAMP00000007582	RRM_1	PF00076.22	4.9e-31	1	2
ENSMAMP00000007582	RRM_1	PF00076.22	4.9e-31	2	2
ENSMAMP00000008041	RRM_1	PF00076.22	1.2e-29	1	2
ENSMAMP00000008041	RRM_1	PF00076.22	1.2e-29	2	2
ENSMAMP00000007721	RRM_1	PF00076.22	6.2e-22	1	1
ENSMAMP00000007355	RRM_1	PF00076.22	5.1e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000007790	-	1080	-	ENSMAMP00000007582	359 (aa)	-	-
ENSMAMT00000007934	-	834	-	ENSMAMP00000007721	277 (aa)	-	-
ENSMAMT00000007559	-	516	-	ENSMAMP00000007355	171 (aa)	-	-
ENSMAMT00000008053	-	771	-	ENSMAMP00000007838	256 (aa)	-	-
ENSMAMT00000008257	-	1059	-	ENSMAMP00000008041	353 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000004888's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000004888's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000004888	srsf4	68	74.468	ENSMAMG00000017161	srsf6a	76	59.848
ENSMAMG00000004888	srsf4	53	74.725	ENSMAMG00000023477	-	98	74.725
ENSMAMG00000004888	srsf4	69	44.355	ENSMAMG00000018454	-	66	47.561
ENSMAMG00000004888	srsf4	69	43.548	ENSMAMG00000019687	-	66	46.914
ENSMAMG00000004888	srsf4	71	39.259	ENSMAMG00000011581	srsf9	73	43.407
ENSMAMG00000004888	srsf4	69	46.774	ENSMAMG00000019691	-	68	47.273
ENSMAMG00000004888	srsf4	69	63.780	ENSMAMG00000002673	srsf5b	61	65.556
ENSMAMG00000004888	srsf4	97	55.639	ENSMAMG00000000192	srsf5a	69	61.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000004888	srsf4	97	75.794	ENSG00000116350	SRSF4	62	82.143	Homo_sapiens
ENSMAMG00000004888	srsf4	68	78.090	ENSAPOG00000023399	-	60	76.243	Acanthochromis_polyacanthus
ENSMAMG00000004888	srsf4	82	95.588	ENSAPOG00000020244	srsf4	86	85.358	Acanthochromis_polyacanthus
ENSMAMG00000004888	srsf4	77	94.118	ENSACIG00000018649	srsf4	90	96.639	Amphilophus_citrinellus
ENSMAMG00000004888	srsf4	70	95.833	ENSAOCG00000005997	srsf4	92	96.875	Amphiprion_ocellaris
ENSMAMG00000004888	srsf4	74	75.094	ENSAPEG00000020826	srsf4	77	79.668	Amphiprion_percula
ENSMAMG00000004888	srsf4	50	98.837	ENSAPEG00000020870	-	67	98.837	Amphiprion_percula
ENSMAMG00000004888	srsf4	80	89.140	ENSATEG00000005680	srsf4	89	78.731	Anabas_testudineus
ENSMAMG00000004888	srsf4	77	95.588	ENSACLG00000003395	srsf4	77	95.588	Astatotilapia_calliptera
ENSMAMG00000004888	srsf4	68	76.923	ENSACLG00000021269	-	97	55.372	Astatotilapia_calliptera
ENSMAMG00000004888	srsf4	69	91.573	ENSAMXG00000034811	srsf4	91	83.871	Astyanax_mexicanus
ENSMAMG00000004888	srsf4	70	51.389	WBGene00004698	rsp-1	99	52.703	Caenorhabditis_elegans
ENSMAMG00000004888	srsf4	96	70.656	ENSCHIG00000022096	SRSF4	57	85.507	Capra_hircus
ENSMAMG00000004888	srsf4	68	88.136	ENSCPBG00000009020	SRSF4	53	85.507	Chrysemys_picta_bellii
ENSMAMG00000004888	srsf4	70	59.124	ENSCING00000020631	-	79	62.694	Ciona_intestinalis
ENSMAMG00000004888	srsf4	96	42.071	ENSCING00000024718	-	56	57.576	Ciona_intestinalis
ENSMAMG00000004888	srsf4	67	61.111	ENSCING00000012370	-	68	62.814	Ciona_intestinalis
ENSMAMG00000004888	srsf4	67	58.602	ENSCING00000011362	-	65	58.602	Ciona_intestinalis
ENSMAMG00000004888	srsf4	70	63.415	ENSCSAVG00000002581	-	70	64.130	Ciona_savignyi
ENSMAMG00000004888	srsf4	86	79.487	ENSCSEG00000010058	srsf4	83	95.588	Cynoglossus_semilaevis
ENSMAMG00000004888	srsf4	83	66.129	ENSCVAG00000004342	srsf4	79	68.559	Cyprinodon_variegatus
ENSMAMG00000004888	srsf4	98	85.915	ENSDARG00000105293	srsf4	74	92.308	Danio_rerio
ENSMAMG00000004888	srsf4	67	62.295	FBgn0004587	B52	97	62.121	Drosophila_melanogaster
ENSMAMG00000004888	srsf4	70	62.097	ENSEBUG00000001681	srsf4	67	62.778	Eptatretus_burgeri
ENSMAMG00000004888	srsf4	60	60.377	ENSEBUG00000003129	srsf4	69	62.092	Eptatretus_burgeri
ENSMAMG00000004888	srsf4	100	61.513	ENSELUG00000017551	srsf4	95	77.273	Esox_lucius
ENSMAMG00000004888	srsf4	87	82.166	ENSFHEG00000007472	srsf4	95	95.455	Fundulus_heteroclitus
ENSMAMG00000004888	srsf4	70	90.083	ENSGMOG00000012906	srsf4	57	89.560	Gadus_morhua
ENSMAMG00000004888	srsf4	89	95.588	ENSGAFG00000018496	srsf4	83	95.588	Gambusia_affinis
ENSMAMG00000004888	srsf4	70	94.215	ENSGACG00000002389	srsf4	86	78.467	Gasterosteus_aculeatus
ENSMAMG00000004888	srsf4	65	79.916	ENSHBUG00000016905	srsf4	71	80.519	Haplochromis_burtoni
ENSMAMG00000004888	srsf4	99	50.000	ENSHBUG00000011326	-	51	77.473	Haplochromis_burtoni
ENSMAMG00000004888	srsf4	68	88.136	ENSHGLG00000011842	SRSF4	55	65.543	Heterocephalus_glaber_female
ENSMAMG00000004888	srsf4	68	88.136	ENSHGLG00100017279	SRSF4	55	65.543	Heterocephalus_glaber_male
ENSMAMG00000004888	srsf4	82	94.118	ENSHCOG00000012540	srsf4	78	98.485	Hippocampus_comes
ENSMAMG00000004888	srsf4	77	95.588	ENSKMAG00000013631	srsf4	90	77.068	Kryptolebias_marmoratus
ENSMAMG00000004888	srsf4	67	75.138	ENSLOCG00000001442	-	60	78.261	Lepisosteus_oculatus
ENSMAMG00000004888	srsf4	68	88.136	ENSLAFG00000002575	SRSF4	61	68.702	Loxodonta_africana
ENSMAMG00000004888	srsf4	77	95.588	ENSMZEG00005026275	srsf4	82	87.171	Maylandia_zebra
ENSMAMG00000004888	srsf4	77	95.588	ENSMMOG00000013653	srsf4	77	95.588	Mola_mola
ENSMAMG00000004888	srsf4	68	88.701	ENSMODG00000011052	SRSF4	55	85.714	Monodelphis_domestica
ENSMAMG00000004888	srsf4	99	87.252	ENSMALG00000013392	srsf4	90	95.588	Monopterus_albus
ENSMAMG00000004888	srsf4	65	79.916	ENSNBRG00000014848	srsf4	71	80.519	Neolamprologus_brichardi
ENSMAMG00000004888	srsf4	68	72.000	ENSNLEG00000030787	-	62	70.056	Nomascus_leucogenys
ENSMAMG00000004888	srsf4	87	75.841	ENSONIG00000013730	srsf4	83	81.651	Oreochromis_niloticus
ENSMAMG00000004888	srsf4	70	95.041	ENSORLG00020016052	srsf4	80	88.372	Oryzias_latipes_hni
ENSMAMG00000004888	srsf4	83	95.588	ENSORLG00015007566	srsf4	85	95.588	Oryzias_latipes_hsok
ENSMAMG00000004888	srsf4	77	95.588	ENSOMEG00000005541	srsf4	84	81.000	Oryzias_melastigma
ENSMAMG00000004888	srsf4	54	87.234	ENSOARG00000002451	SRSF4	50	78.065	Ovis_aries
ENSMAMG00000004888	srsf4	51	53.846	ENSOARG00000017944	-	70	47.090	Ovis_aries
ENSMAMG00000004888	srsf4	81	82.128	ENSPMGG00000013436	srsf4	95	92.969	Periophthalmus_magnuspinnatus
ENSMAMG00000004888	srsf4	70	63.780	ENSPMAG00000009397	srsf4	89	58.300	Petromyzon_marinus
ENSMAMG00000004888	srsf4	93	95.588	ENSPFOG00000001306	srsf4	76	94.203	Poecilia_formosa
ENSMAMG00000004888	srsf4	78	98.507	ENSPLAG00000008812	srsf4	81	95.652	Poecilia_latipinna
ENSMAMG00000004888	srsf4	93	95.588	ENSPMEG00000023638	srsf4	94	95.652	Poecilia_mexicana
ENSMAMG00000004888	srsf4	93	94.118	ENSPREG00000009639	srsf4	81	95.652	Poecilia_reticulata
ENSMAMG00000004888	srsf4	69	92.308	ENSPNYG00000003796	srsf4	80	71.044	Pundamilia_nyererei
ENSMAMG00000004888	srsf4	67	93.023	ENSPNAG00000023844	srsf4	53	92.442	Pygocentrus_nattereri
ENSMAMG00000004888	srsf4	56	86.301	ENSSHAG00000012407	SRSF4	51	82.781	Sarcophilus_harrisii
ENSMAMG00000004888	srsf4	68	93.064	ENSSFOG00015020292	srsf4	94	82.443	Scleropages_formosus
ENSMAMG00000004888	srsf4	81	95.588	ENSSMAG00000001707	srsf4	84	81.433	Scophthalmus_maximus
ENSMAMG00000004888	srsf4	90	95.588	ENSSDUG00000007387	srsf4	92	82.831	Seriola_dumerili
ENSMAMG00000004888	srsf4	69	80.791	ENSSLDG00000009745	srsf4	89	66.802	Seriola_lalandi_dorsalis
ENSMAMG00000004888	srsf4	84	95.588	ENSSPAG00000014538	srsf4	83	97.458	Stegastes_partitus
ENSMAMG00000004888	srsf4	83	92.647	ENSTRUG00000011891	srsf4	79	92.754	Takifugu_rubripes
ENSMAMG00000004888	srsf4	70	96.667	ENSTNIG00000005573	srsf4	76	92.754	Tetraodon_nigroviridis
ENSMAMG00000004888	srsf4	68	71.809	ENSXCOG00000003212	-	55	74.468	Xiphophorus_couchianus
ENSMAMG00000004888	srsf4	99	95.588	ENSXCOG00000018826	srsf4	89	93.220	Xiphophorus_couchianus