EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000005410 (Gene tree)
Gene ID: 113129230
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 3667 bases
Position: chrOOHQ01000036.1:12998960-13002626
Accession: 113129230
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000007935	LSM	PF01423.22	1.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000008151	-	3080	-	ENSMAMP00000007935	103 (aa)	XP_026160892	UPI00022B1445

Gene Model

Click here to download ENSMAMG00000005410's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000005410's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000005410	lsm7	69	38.028	ENSMAMG00000016077	snrpg	83	38.028

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000005410	lsm7	100	94.175	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSMAMG00000005410	lsm7	91	98.936	ENSAPOG00000015573	lsm7	81	98.936	Acanthochromis_polyacanthus
ENSMAMG00000005410	lsm7	100	91.262	ENSAMEG00000005484	LSM7	100	91.262	Ailuropoda_melanoleuca
ENSMAMG00000005410	lsm7	95	100.000	ENSACIG00000006498	lsm7	78	100.000	Amphilophus_citrinellus
ENSMAMG00000005410	lsm7	99	98.039	ENSAOCG00000001077	lsm7	92	99.010	Amphiprion_ocellaris
ENSMAMG00000005410	lsm7	100	99.029	ENSAPEG00000000694	lsm7	100	99.029	Amphiprion_percula
ENSMAMG00000005410	lsm7	100	97.087	ENSAPEG00000024447	lsm7	92	99.010	Amphiprion_percula
ENSMAMG00000005410	lsm7	100	99.029	ENSATEG00000008557	lsm7	100	99.029	Anabas_testudineus
ENSMAMG00000005410	lsm7	100	94.175	ENSANAG00000037196	-	100	94.175	Aotus_nancymaae
ENSMAMG00000005410	lsm7	100	85.437	ENSANAG00000022222	-	100	85.437	Aotus_nancymaae
ENSMAMG00000005410	lsm7	100	100.000	ENSACLG00000021021	lsm7	100	100.000	Astatotilapia_calliptera
ENSMAMG00000005410	lsm7	100	97.087	ENSAMXG00000037622	lsm7	100	97.087	Astyanax_mexicanus
ENSMAMG00000005410	lsm7	100	94.175	ENSBTAG00000004521	LSM7	100	94.175	Bos_taurus
ENSMAMG00000005410	lsm7	97	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSMAMG00000005410	lsm7	69	76.056	ENSCJAG00000039713	-	87	76.056	Callithrix_jacchus
ENSMAMG00000005410	lsm7	98	93.069	ENSCAFG00000019409	LSM7	98	93.069	Canis_familiaris
ENSMAMG00000005410	lsm7	98	93.069	ENSCAFG00020018168	LSM7	74	94.000	Canis_lupus_dingo
ENSMAMG00000005410	lsm7	100	92.233	ENSCHIG00000023663	LSM7	100	92.233	Capra_hircus
ENSMAMG00000005410	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSMAMG00000005410	lsm7	100	94.175	ENSCPOG00000014025	LSM7	100	94.175	Cavia_porcellus
ENSMAMG00000005410	lsm7	98	94.059	ENSCCAG00000035456	LSM7	99	94.059	Cebus_capucinus
ENSMAMG00000005410	lsm7	100	94.175	ENSCATG00000023543	LSM7	100	94.175	Cercocebus_atys
ENSMAMG00000005410	lsm7	100	94.175	ENSCLAG00000011635	LSM7	100	94.175	Chinchilla_lanigera
ENSMAMG00000005410	lsm7	100	94.175	ENSCSAG00000011599	LSM7	100	94.175	Chlorocebus_sabaeus
ENSMAMG00000005410	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSMAMG00000005410	lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSMAMG00000005410	lsm7	100	94.175	ENSCANG00000035525	LSM7	100	94.175	Colobus_angolensis_palliatus
ENSMAMG00000005410	lsm7	87	83.333	ENSCGRG00001016005	-	92	83.333	Cricetulus_griseus_chok1gshd
ENSMAMG00000005410	lsm7	100	93.204	ENSCGRG00001000807	-	100	93.204	Cricetulus_griseus_chok1gshd
ENSMAMG00000005410	lsm7	98	93.069	ENSCGRG00000014355	-	97	93.069	Cricetulus_griseus_crigri
ENSMAMG00000005410	lsm7	87	83.333	ENSCGRG00000006821	-	92	83.333	Cricetulus_griseus_crigri
ENSMAMG00000005410	lsm7	98	99.010	ENSCSEG00000014900	lsm7	86	99.010	Cynoglossus_semilaevis
ENSMAMG00000005410	lsm7	98	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSMAMG00000005410	lsm7	100	98.058	ENSDARG00000058328	lsm7	100	98.058	Danio_rerio
ENSMAMG00000005410	lsm7	99	92.157	ENSDORG00000024460	Lsm7	100	92.157	Dipodomys_ordii
ENSMAMG00000005410	lsm7	94	72.449	FBgn0261068	LSm7	89	72.449	Drosophila_melanogaster
ENSMAMG00000005410	lsm7	98	91.089	ENSETEG00000012788	LSM7	99	91.089	Echinops_telfairi
ENSMAMG00000005410	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSMAMG00000005410	lsm7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSMAMG00000005410	lsm7	100	90.291	ENSECAG00000001440	LSM7	66	90.291	Equus_caballus
ENSMAMG00000005410	lsm7	100	93.204	ENSFCAG00000003445	LSM7	100	93.204	Felis_catus
ENSMAMG00000005410	lsm7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSMAMG00000005410	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSMAMG00000005410	lsm7	98	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSMAMG00000005410	lsm7	100	95.146	ENSGMOG00000013320	lsm7	100	95.146	Gadus_morhua
ENSMAMG00000005410	lsm7	100	98.058	ENSGAFG00000013902	lsm7	100	98.058	Gambusia_affinis
ENSMAMG00000005410	lsm7	100	96.117	ENSGACG00000010390	lsm7	100	96.117	Gasterosteus_aculeatus
ENSMAMG00000005410	lsm7	100	94.175	ENSGGOG00000010172	LSM7	100	94.175	Gorilla_gorilla
ENSMAMG00000005410	lsm7	100	100.000	ENSHBUG00000004616	lsm7	100	100.000	Haplochromis_burtoni
ENSMAMG00000005410	lsm7	100	94.175	ENSHGLG00000010587	LSM7	100	94.175	Heterocephalus_glaber_female
ENSMAMG00000005410	lsm7	100	94.175	ENSHGLG00100000852	LSM7	100	94.175	Heterocephalus_glaber_male
ENSMAMG00000005410	lsm7	98	100.000	ENSHCOG00000020252	lsm7	100	100.000	Hippocampus_comes
ENSMAMG00000005410	lsm7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSMAMG00000005410	lsm7	98	94.059	ENSSTOG00000028372	LSM7	99	94.059	Ictidomys_tridecemlineatus
ENSMAMG00000005410	lsm7	97	94.000	ENSJJAG00000001936	Lsm7	97	94.000	Jaculus_jaculus
ENSMAMG00000005410	lsm7	100	98.058	ENSKMAG00000022151	lsm7	100	98.058	Kryptolebias_marmoratus
ENSMAMG00000005410	lsm7	100	98.058	ENSLBEG00000005203	lsm7	100	98.058	Labrus_bergylta
ENSMAMG00000005410	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	93.204	Latimeria_chalumnae
ENSMAMG00000005410	lsm7	98	96.040	ENSLOCG00000004356	lsm7	98	96.040	Lepisosteus_oculatus
ENSMAMG00000005410	lsm7	98	94.059	ENSLAFG00000029302	LSM7	98	94.059	Loxodonta_africana
ENSMAMG00000005410	lsm7	100	94.175	ENSMFAG00000044572	LSM7	100	94.175	Macaca_fascicularis
ENSMAMG00000005410	lsm7	100	94.175	ENSMMUG00000000452	LSM7	100	94.175	Macaca_mulatta
ENSMAMG00000005410	lsm7	100	94.175	ENSMNEG00000004393	LSM7	100	94.175	Macaca_nemestrina
ENSMAMG00000005410	lsm7	100	94.175	ENSMLEG00000030852	LSM7	100	94.175	Mandrillus_leucophaeus
ENSMAMG00000005410	lsm7	100	100.000	ENSMZEG00005028055	lsm7	100	100.000	Maylandia_zebra
ENSMAMG00000005410	lsm7	100	96.117	ENSMGAG00000000750	LSM7	89	96.117	Meleagris_gallopavo
ENSMAMG00000005410	lsm7	100	93.204	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSMAMG00000005410	lsm7	100	93.204	ENSMICG00000009988	-	100	93.204	Microcebus_murinus
ENSMAMG00000005410	lsm7	100	94.175	ENSMICG00000028619	-	100	94.175	Microcebus_murinus
ENSMAMG00000005410	lsm7	100	93.204	ENSMOCG00000016925	Lsm7	100	93.204	Microtus_ochrogaster
ENSMAMG00000005410	lsm7	100	99.029	ENSMMOG00000019645	lsm7	98	99.029	Mola_mola
ENSMAMG00000005410	lsm7	100	95.146	ENSMODG00000004722	LSM7	100	95.146	Monodelphis_domestica
ENSMAMG00000005410	lsm7	100	100.000	ENSMALG00000014511	lsm7	79	100.000	Monopterus_albus
ENSMAMG00000005410	lsm7	99	93.137	MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	Mus_caroli
ENSMAMG00000005410	lsm7	99	93.137	ENSMUSG00000035215	Lsm7	99	93.137	Mus_musculus
ENSMAMG00000005410	lsm7	99	93.137	MGP_PahariEiJ_G0031020	Lsm7	99	93.137	Mus_pahari
ENSMAMG00000005410	lsm7	99	93.137	MGP_SPRETEiJ_G0016425	Lsm7	99	93.137	Mus_spretus
ENSMAMG00000005410	lsm7	100	91.262	ENSMLUG00000013097	-	100	91.262	Myotis_lucifugus
ENSMAMG00000005410	lsm7	99	88.235	ENSMLUG00000024002	-	94	88.235	Myotis_lucifugus
ENSMAMG00000005410	lsm7	100	92.233	ENSNGAG00000021637	Lsm7	100	92.233	Nannospalax_galili
ENSMAMG00000005410	lsm7	100	98.058	ENSNBRG00000001237	-	82	98.058	Neolamprologus_brichardi
ENSMAMG00000005410	lsm7	98	100.000	ENSNBRG00000015770	lsm7	87	100.000	Neolamprologus_brichardi
ENSMAMG00000005410	lsm7	100	94.175	ENSNLEG00000002265	LSM7	100	94.175	Nomascus_leucogenys
ENSMAMG00000005410	lsm7	100	74.757	ENSODEG00000008190	-	100	74.757	Octodon_degus
ENSMAMG00000005410	lsm7	100	94.175	ENSODEG00000013590	-	100	94.175	Octodon_degus
ENSMAMG00000005410	lsm7	100	87.379	ENSODEG00000018769	-	100	87.379	Octodon_degus
ENSMAMG00000005410	lsm7	100	100.000	ENSONIG00000001801	lsm7	89	100.000	Oreochromis_niloticus
ENSMAMG00000005410	lsm7	100	99.029	ENSORLG00000023951	lsm7	100	99.029	Oryzias_latipes
ENSMAMG00000005410	lsm7	100	99.029	ENSORLG00020022226	lsm7	100	99.029	Oryzias_latipes_hni
ENSMAMG00000005410	lsm7	100	97.087	ENSORLG00015020044	lsm7	94	99.010	Oryzias_latipes_hsok
ENSMAMG00000005410	lsm7	100	99.029	ENSOMEG00000012806	lsm7	100	99.029	Oryzias_melastigma
ENSMAMG00000005410	lsm7	100	82.524	ENSOGAG00000024373	-	100	82.524	Otolemur_garnettii
ENSMAMG00000005410	lsm7	98	92.079	ENSOGAG00000000144	-	99	92.079	Otolemur_garnettii
ENSMAMG00000005410	lsm7	100	92.233	ENSOARG00000014013	LSM7	100	92.233	Ovis_aries
ENSMAMG00000005410	lsm7	100	94.175	ENSPPAG00000026500	LSM7	100	94.175	Pan_paniscus
ENSMAMG00000005410	lsm7	100	93.204	ENSPPRG00000008624	LSM7	100	93.204	Panthera_pardus
ENSMAMG00000005410	lsm7	90	93.548	ENSPTIG00000016252	LSM7	98	93.069	Panthera_tigris_altaica
ENSMAMG00000005410	lsm7	100	94.175	ENSPTRG00000010233	LSM7	100	94.175	Pan_troglodytes
ENSMAMG00000005410	lsm7	100	94.175	ENSPANG00000020668	LSM7	100	94.175	Papio_anubis
ENSMAMG00000005410	lsm7	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSMAMG00000005410	lsm7	98	96.040	ENSPSIG00000017149	LSM7	89	96.040	Pelodiscus_sinensis
ENSMAMG00000005410	lsm7	100	99.029	ENSPMGG00000006498	lsm7	100	99.029	Periophthalmus_magnuspinnatus
ENSMAMG00000005410	lsm7	100	95.146	ENSPCIG00000030454	LSM7	100	95.146	Phascolarctos_cinereus
ENSMAMG00000005410	lsm7	100	95.146	ENSPFOG00000012467	lsm7	91	95.146	Poecilia_formosa
ENSMAMG00000005410	lsm7	100	95.146	ENSPLAG00000000252	lsm7	94	96.078	Poecilia_latipinna
ENSMAMG00000005410	lsm7	100	95.146	ENSPMEG00000000587	lsm7	94	96.078	Poecilia_mexicana
ENSMAMG00000005410	lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSMAMG00000005410	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSMAMG00000005410	lsm7	100	94.175	ENSPCOG00000017177	LSM7	100	94.175	Propithecus_coquereli
ENSMAMG00000005410	lsm7	100	100.000	ENSPNYG00000006938	lsm7	100	100.000	Pundamilia_nyererei
ENSMAMG00000005410	lsm7	100	97.087	ENSPNAG00000010141	lsm7	100	97.087	Pygocentrus_nattereri
ENSMAMG00000005410	lsm7	99	94.118	ENSRNOG00000019552	Lsm7	99	94.118	Rattus_norvegicus
ENSMAMG00000005410	lsm7	100	94.175	ENSRBIG00000035978	LSM7	100	94.175	Rhinopithecus_bieti
ENSMAMG00000005410	lsm7	100	94.175	ENSRROG00000034044	LSM7	100	94.175	Rhinopithecus_roxellana
ENSMAMG00000005410	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSMAMG00000005410	lsm7	100	94.175	ENSSBOG00000034899	LSM7	100	94.175	Saimiri_boliviensis_boliviensis
ENSMAMG00000005410	lsm7	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSMAMG00000005410	lsm7	100	97.087	ENSSMAG00000004195	lsm7	93	99.010	Scophthalmus_maximus
ENSMAMG00000005410	lsm7	100	99.029	ENSSDUG00000001863	lsm7	100	99.029	Seriola_dumerili
ENSMAMG00000005410	lsm7	100	99.029	ENSSLDG00000016339	lsm7	100	99.029	Seriola_lalandi_dorsalis
ENSMAMG00000005410	lsm7	100	99.029	ENSSPAG00000015221	lsm7	100	99.029	Stegastes_partitus
ENSMAMG00000005410	lsm7	98	94.059	ENSSSCG00000013463	LSM7	99	94.059	Sus_scrofa
ENSMAMG00000005410	lsm7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSMAMG00000005410	lsm7	100	97.087	ENSTRUG00000022913	lsm7	100	97.087	Takifugu_rubripes
ENSMAMG00000005410	lsm7	100	97.087	ENSTNIG00000015525	lsm7	100	97.087	Tetraodon_nigroviridis
ENSMAMG00000005410	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSMAMG00000005410	lsm7	100	91.262	ENSUAMG00000000912	LSM7	86	91.262	Ursus_americanus
ENSMAMG00000005410	lsm7	90	93.548	ENSUMAG00000006556	LSM7	78	94.000	Ursus_maritimus
ENSMAMG00000005410	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSMAMG00000005410	lsm7	98	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSMAMG00000005410	lsm7	99	97.059	ENSXCOG00000002572	lsm7	100	97.059	Xiphophorus_couchianus
ENSMAMG00000005410	lsm7	100	98.058	ENSXMAG00000018630	lsm7	100	98.058	Xiphophorus_maculatus