EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000005473 (Gene tree)
Gene ID: 113124515
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 14687 bases
Position: chrOOHQ01000096.1:19024807-19039493
Accession: 113124515
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000008126	ResIII	PF04851.15	4e-07	1	1
ENSMAMP00000008191	ResIII	PF04851.15	9.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000008344	-	7222	XM_026297464	ENSMAMP00000008126	1403 (aa)	XP_026153249	UPI000E4629C2
ENSMAMT00000008410	-	4080	-	ENSMAMP00000008191	1359 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000005473's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000005473's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000005473	sbno1	76	59.959	ENSMAMG00000018758	si:ch73-63e15.2	61	64.220

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000005473	sbno1	99	75.828	ENSG00000139697	SBNO1	99	75.687	Homo_sapiens
ENSMAMG00000005473	sbno1	82	95.043	ENSAPOG00000003196	sbno1	98	94.783	Acanthochromis_polyacanthus
ENSMAMG00000005473	sbno1	99	75.809	ENSAMEG00000015151	SBNO1	99	75.668	Ailuropoda_melanoleuca
ENSMAMG00000005473	sbno1	100	87.862	ENSACIG00000008088	sbno1	99	88.003	Amphilophus_citrinellus
ENSMAMG00000005473	sbno1	100	92.390	ENSAOCG00000014859	sbno1	99	92.745	Amphiprion_ocellaris
ENSMAMG00000005473	sbno1	100	92.319	ENSAPEG00000006069	sbno1	99	92.674	Amphiprion_percula
ENSMAMG00000005473	sbno1	100	93.106	ENSATEG00000006667	sbno1	100	92.893	Anabas_testudineus
ENSMAMG00000005473	sbno1	98	76.741	ENSAPLG00000015674	SBNO1	99	76.815	Anas_platyrhynchos
ENSMAMG00000005473	sbno1	98	75.269	ENSACAG00000015441	SBNO1	88	74.947	Anolis_carolinensis
ENSMAMG00000005473	sbno1	95	84.755	ENSANAG00000029958	-	99	75.617	Aotus_nancymaae
ENSMAMG00000005473	sbno1	100	86.467	ENSACLG00000024913	sbno1	100	86.823	Astatotilapia_calliptera
ENSMAMG00000005473	sbno1	100	81.560	ENSAMXG00000019473	sbno1	100	82.057	Astyanax_mexicanus
ENSMAMG00000005473	sbno1	100	76.056	ENSBTAG00000020505	SBNO1	99	75.915	Bos_taurus
ENSMAMG00000005473	sbno1	99	75.687	ENSCJAG00000016599	SBNO1	99	75.546	Callithrix_jacchus
ENSMAMG00000005473	sbno1	99	75.862	ENSCAFG00000007503	SBNO1	97	86.111	Canis_familiaris
ENSMAMG00000005473	sbno1	95	82.491	ENSCAFG00020015363	SBNO1	99	82.491	Canis_lupus_dingo
ENSMAMG00000005473	sbno1	95	84.838	ENSCHIG00000008382	SBNO1	99	84.838	Capra_hircus
ENSMAMG00000005473	sbno1	99	76.039	ENSTSYG00000012749	SBNO1	99	78.333	Carlito_syrichta
ENSMAMG00000005473	sbno1	90	85.172	ENSCAPG00000000384	SBNO1	99	85.172	Cavia_aperea
ENSMAMG00000005473	sbno1	95	85.172	ENSCPOG00000008109	SBNO1	99	85.172	Cavia_porcellus
ENSMAMG00000005473	sbno1	99	71.479	ENSCCAG00000035316	SBNO1	99	73.646	Cebus_capucinus
ENSMAMG00000005473	sbno1	91	84.560	ENSCATG00000008239	SBNO1	99	84.560	Cercocebus_atys
ENSMAMG00000005473	sbno1	95	85.172	ENSCLAG00000008995	SBNO1	99	85.172	Chinchilla_lanigera
ENSMAMG00000005473	sbno1	84	81.599	ENSCSAG00000002064	SBNO1	99	82.444	Chlorocebus_sabaeus
ENSMAMG00000005473	sbno1	96	74.212	ENSCHOG00000008814	SBNO1	96	73.239	Choloepus_hoffmanni
ENSMAMG00000005473	sbno1	98	76.204	ENSCPBG00000025968	SBNO1	99	75.865	Chrysemys_picta_bellii
ENSMAMG00000005473	sbno1	99	72.234	ENSCANG00000042688	-	99	71.952	Colobus_angolensis_palliatus
ENSMAMG00000005473	sbno1	95	83.604	ENSCGRG00001017470	Sbno1	99	83.604	Cricetulus_griseus_chok1gshd
ENSMAMG00000005473	sbno1	95	83.604	ENSCGRG00000004756	Sbno1	99	83.604	Cricetulus_griseus_crigri
ENSMAMG00000005473	sbno1	100	90.825	ENSCSEG00000011919	sbno1	100	90.612	Cynoglossus_semilaevis
ENSMAMG00000005473	sbno1	100	90.812	ENSCVAG00000007038	sbno1	100	90.812	Cyprinodon_variegatus
ENSMAMG00000005473	sbno1	100	81.476	ENSDARG00000099080	sbno1	100	81.831	Danio_rerio
ENSMAMG00000005473	sbno1	99	78.667	ENSDNOG00000017147	SBNO1	96	78.667	Dasypus_novemcinctus
ENSMAMG00000005473	sbno1	99	70.949	ENSDORG00000015261	Sbno1	99	70.148	Dipodomys_ordii
ENSMAMG00000005473	sbno1	93	72.956	ENSETEG00000005620	SBNO1	93	72.956	Echinops_telfairi
ENSMAMG00000005473	sbno1	75	63.089	ENSEBUG00000013823	sbno1	93	62.712	Eptatretus_burgeri
ENSMAMG00000005473	sbno1	51	73.371	ENSEASG00005012595	-	92	73.588	Equus_asinus_asinus
ENSMAMG00000005473	sbno1	99	76.110	ENSECAG00000006127	SBNO1	99	76.436	Equus_caballus
ENSMAMG00000005473	sbno1	82	79.235	ENSEEUG00000003793	SBNO1	82	79.235	Erinaceus_europaeus
ENSMAMG00000005473	sbno1	100	83.487	ENSELUG00000002886	sbno1	99	83.380	Esox_lucius
ENSMAMG00000005473	sbno1	99	76.039	ENSFCAG00000015331	SBNO1	99	75.899	Felis_catus
ENSMAMG00000005473	sbno1	98	76.813	ENSFALG00000009273	SBNO1	99	76.885	Ficedula_albicollis
ENSMAMG00000005473	sbno1	95	82.246	ENSFDAG00000014232	SBNO1	99	78.761	Fukomys_damarensis
ENSMAMG00000005473	sbno1	100	91.239	ENSFHEG00000007360	sbno1	100	91.239	Fundulus_heteroclitus
ENSMAMG00000005473	sbno1	94	84.725	ENSGMOG00000018229	sbno1	99	85.102	Gadus_morhua
ENSMAMG00000005473	sbno1	89	76.935	ENSGALG00000003392	SBNO1	99	76.855	Gallus_gallus
ENSMAMG00000005473	sbno1	100	91.518	ENSGAFG00000003960	sbno1	100	91.518	Gambusia_affinis
ENSMAMG00000005473	sbno1	94	89.331	ENSGACG00000015633	sbno1	99	89.632	Gasterosteus_aculeatus
ENSMAMG00000005473	sbno1	95	83.647	ENSGAGG00000001065	SBNO1	99	83.746	Gopherus_agassizii
ENSMAMG00000005473	sbno1	95	84.991	ENSGGOG00000015000	SBNO1	99	84.991	Gorilla_gorilla
ENSMAMG00000005473	sbno1	100	80.242	ENSHBUG00000011910	sbno1	100	80.455	Haplochromis_burtoni
ENSMAMG00000005473	sbno1	95	85.299	ENSHGLG00000014165	-	99	81.900	Heterocephalus_glaber_female
ENSMAMG00000005473	sbno1	91	94.455	ENSHCOG00000003246	sbno1	95	94.455	Hippocampus_comes
ENSMAMG00000005473	sbno1	100	82.224	ENSIPUG00000015830	Sbno1	98	82.955	Ictalurus_punctatus
ENSMAMG00000005473	sbno1	95	84.838	ENSSTOG00000023221	SBNO1	99	84.838	Ictidomys_tridecemlineatus
ENSMAMG00000005473	sbno1	95	81.227	ENSJJAG00000001741	Sbno1	99	81.227	Jaculus_jaculus
ENSMAMG00000005473	sbno1	100	91.388	ENSKMAG00000009696	sbno1	100	91.601	Kryptolebias_marmoratus
ENSMAMG00000005473	sbno1	100	90.780	ENSLBEG00000007623	sbno1	100	90.780	Labrus_bergylta
ENSMAMG00000005473	sbno1	100	72.986	ENSLACG00000017227	SBNO1	99	75.081	Latimeria_chalumnae
ENSMAMG00000005473	sbno1	100	80.634	ENSLOCG00000005725	sbno1	97	80.845	Lepisosteus_oculatus
ENSMAMG00000005473	sbno1	99	75.035	ENSLAFG00000002135	SBNO1	99	75.405	Loxodonta_africana
ENSMAMG00000005473	sbno1	95	81.607	ENSMFAG00000031429	SBNO1	99	81.607	Macaca_fascicularis
ENSMAMG00000005473	sbno1	95	81.607	ENSMMUG00000011496	SBNO1	99	81.607	Macaca_mulatta
ENSMAMG00000005473	sbno1	95	84.838	ENSMLEG00000033260	SBNO1	99	84.838	Mandrillus_leucophaeus
ENSMAMG00000005473	sbno1	98	76.923	ENSMGAG00000003274	SBNO1	99	76.855	Meleagris_gallopavo
ENSMAMG00000005473	sbno1	50	73.593	ENSMAUG00000004834	-	99	73.593	Mesocricetus_auratus
ENSMAMG00000005473	sbno1	95	81.851	ENSMICG00000006573	-	99	74.560	Microcebus_murinus
ENSMAMG00000005473	sbno1	95	84.477	ENSMOCG00000009390	Sbno1	99	84.477	Microtus_ochrogaster
ENSMAMG00000005473	sbno1	100	84.424	ENSMMOG00000008691	sbno1	99	84.861	Mola_mola
ENSMAMG00000005473	sbno1	99	75.989	ENSMODG00000012470	SBNO1	98	76.076	Monodelphis_domestica
ENSMAMG00000005473	sbno1	100	92.040	ENSMALG00000001056	sbno1	100	91.827	Monopterus_albus
ENSMAMG00000005473	sbno1	99	75.476	MGP_CAROLIEiJ_G0027749	Sbno1	95	90.789	Mus_caroli
ENSMAMG00000005473	sbno1	99	75.811	ENSMUSG00000038095	Sbno1	94	90.789	Mus_musculus
ENSMAMG00000005473	sbno1	99	75.634	MGP_PahariEiJ_G0024329	Sbno1	95	90.789	Mus_pahari
ENSMAMG00000005473	sbno1	99	75.811	MGP_SPRETEiJ_G0028747	Sbno1	95	90.789	Mus_spretus
ENSMAMG00000005473	sbno1	99	76.039	ENSMPUG00000001658	SBNO1	99	75.899	Mustela_putorius_furo
ENSMAMG00000005473	sbno1	99	75.617	ENSMLUG00000017159	SBNO1	99	75.476	Myotis_lucifugus
ENSMAMG00000005473	sbno1	92	86.051	ENSNGAG00000012620	Sbno1	98	86.051	Nannospalax_galili
ENSMAMG00000005473	sbno1	100	87.179	ENSNBRG00000019189	sbno1	100	87.393	Neolamprologus_brichardi
ENSMAMG00000005473	sbno1	99	72.849	ENSNLEG00000001502	SBNO1	99	76.715	Nomascus_leucogenys
ENSMAMG00000005473	sbno1	62	74.051	ENSMEUG00000008768	-	93	77.358	Notamacropus_eugenii
ENSMAMG00000005473	sbno1	99	74.982	ENSOPRG00000011054	SBNO1	99	74.982	Ochotona_princeps
ENSMAMG00000005473	sbno1	95	85.172	ENSODEG00000009997	SBNO1	99	85.172	Octodon_degus
ENSMAMG00000005473	sbno1	100	91.542	ENSONIG00000015348	sbno1	100	91.684	Oreochromis_niloticus
ENSMAMG00000005473	sbno1	98	75.000	ENSOCUG00000002441	SBNO1	95	74.857	Oryctolagus_cuniculus
ENSMAMG00000005473	sbno1	100	90.547	ENSORLG00000001593	sbno1	100	90.547	Oryzias_latipes
ENSMAMG00000005473	sbno1	100	90.398	ENSORLG00020015216	sbno1	100	90.327	Oryzias_latipes_hni
ENSMAMG00000005473	sbno1	100	90.612	ENSORLG00015002726	sbno1	100	90.541	Oryzias_latipes_hsok
ENSMAMG00000005473	sbno1	99	90.150	ENSOMEG00000019313	sbno1	99	90.293	Oryzias_melastigma
ENSMAMG00000005473	sbno1	50	72.793	ENSOGAG00000010781	-	99	73.016	Otolemur_garnettii
ENSMAMG00000005473	sbno1	100	75.862	ENSOARG00000004404	SBNO1	99	75.721	Ovis_aries
ENSMAMG00000005473	sbno1	95	84.991	ENSPPAG00000024635	SBNO1	99	84.991	Pan_paniscus
ENSMAMG00000005473	sbno1	99	76.039	ENSPPRG00000022092	SBNO1	99	75.899	Panthera_pardus
ENSMAMG00000005473	sbno1	99	75.989	ENSPTIG00000017803	SBNO1	99	75.847	Panthera_tigris_altaica
ENSMAMG00000005473	sbno1	95	84.991	ENSPTRG00000005597	SBNO1	99	84.991	Pan_troglodytes
ENSMAMG00000005473	sbno1	95	84.838	ENSPANG00000011640	SBNO1	99	84.838	Papio_anubis
ENSMAMG00000005473	sbno1	100	80.989	ENSPKIG00000001441	sbno1	100	81.060	Paramormyrops_kingsleyae
ENSMAMG00000005473	sbno1	98	75.720	ENSPSIG00000009572	-	99	75.545	Pelodiscus_sinensis
ENSMAMG00000005473	sbno1	91	74.272	ENSPSIG00000009256	-	98	74.430	Pelodiscus_sinensis
ENSMAMG00000005473	sbno1	95	84.116	ENSPEMG00000016087	Sbno1	99	84.116	Peromyscus_maniculatus_bairdii
ENSMAMG00000005473	sbno1	99	75.865	ENSPCIG00000010985	SBNO1	99	76.006	Phascolarctos_cinereus
ENSMAMG00000005473	sbno1	100	91.382	ENSPFOG00000005069	sbno1	100	91.595	Poecilia_formosa
ENSMAMG00000005473	sbno1	100	91.524	ENSPLAG00000015015	sbno1	100	91.738	Poecilia_latipinna
ENSMAMG00000005473	sbno1	100	91.388	ENSPMEG00000021212	sbno1	100	91.601	Poecilia_mexicana
ENSMAMG00000005473	sbno1	100	90.819	ENSPREG00000017746	sbno1	100	91.032	Poecilia_reticulata
ENSMAMG00000005473	sbno1	99	75.562	ENSPPYG00000005084	SBNO1	99	76.006	Pongo_abelii
ENSMAMG00000005473	sbno1	84	77.828	ENSPCAG00000008634	SBNO1	88	68.980	Procavia_capensis
ENSMAMG00000005473	sbno1	95	84.699	ENSPCOG00000024277	SBNO1	99	84.699	Propithecus_coquereli
ENSMAMG00000005473	sbno1	87	84.692	ENSPVAG00000015304	SBNO1	87	84.692	Pteropus_vampyrus
ENSMAMG00000005473	sbno1	100	91.116	ENSPNYG00000004291	sbno1	100	91.400	Pundamilia_nyererei
ENSMAMG00000005473	sbno1	100	82.069	ENSPNAG00000015622	sbno1	100	81.928	Pygocentrus_nattereri
ENSMAMG00000005473	sbno1	95	84.477	ENSRNOG00000001064	Sbno1	99	84.629	Rattus_norvegicus
ENSMAMG00000005473	sbno1	95	84.838	ENSRROG00000034230	SBNO1	99	84.838	Rhinopithecus_roxellana
ENSMAMG00000005473	sbno1	97	73.611	ENSSBOG00000015422	SBNO1	99	73.465	Saimiri_boliviensis_boliviensis
ENSMAMG00000005473	sbno1	100	81.780	ENSSFOG00015019025	sbno1	100	81.709	Scleropages_formosus
ENSMAMG00000005473	sbno1	100	92.242	ENSSMAG00000013640	sbno1	100	92.456	Scophthalmus_maximus
ENSMAMG00000005473	sbno1	100	93.888	ENSSDUG00000023480	sbno1	100	93.674	Seriola_dumerili
ENSMAMG00000005473	sbno1	100	93.603	ENSSLDG00000007928	sbno1	100	93.390	Seriola_lalandi_dorsalis
ENSMAMG00000005473	sbno1	89	81.745	ENSSARG00000002594	SBNO1	89	81.745	Sorex_araneus
ENSMAMG00000005473	sbno1	98	75.902	ENSSPUG00000012640	SBNO1	99	75.496	Sphenodon_punctatus
ENSMAMG00000005473	sbno1	100	92.964	ENSSPAG00000016244	sbno1	100	93.177	Stegastes_partitus
ENSMAMG00000005473	sbno1	99	75.809	ENSSSCG00000009776	SBNO1	99	75.668	Sus_scrofa
ENSMAMG00000005473	sbno1	98	76.619	ENSTGUG00000005380	SBNO1	99	76.695	Taeniopygia_guttata
ENSMAMG00000005473	sbno1	99	87.633	ENSTRUG00000018490	sbno1	99	87.989	Takifugu_rubripes
ENSMAMG00000005473	sbno1	57	85.056	ENSTNIG00000013506	sbno1	99	85.338	Tetraodon_nigroviridis
ENSMAMG00000005473	sbno1	99	76.039	ENSUAMG00000019671	SBNO1	99	75.899	Ursus_americanus
ENSMAMG00000005473	sbno1	99	76.039	ENSUMAG00000004002	SBNO1	99	75.899	Ursus_maritimus
ENSMAMG00000005473	sbno1	95	71.111	ENSVPAG00000007024	SBNO1	95	71.111	Vicugna_pacos
ENSMAMG00000005473	sbno1	99	75.969	ENSVVUG00000027807	SBNO1	99	75.828	Vulpes_vulpes
ENSMAMG00000005473	sbno1	99	73.258	ENSXETG00000031930	SBNO1	99	73.167	Xenopus_tropicalis
ENSMAMG00000005473	sbno1	89	88.061	ENSXCOG00000011607	sbno1	99	86.509	Xiphophorus_couchianus
ENSMAMG00000005473	sbno1	100	91.174	ENSXMAG00000002140	sbno1	100	91.388	Xiphophorus_maculatus