EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000006190 (Gene tree)
Gene ID: 113139892
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 3023 bases
Position: chrOOHQ01000042.1:6186767-6189789
Accession: 113139892
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009166	LSM	PF01423.22	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000009408	-	1325	XM_026323515	ENSMAMP00000009166	142 (aa)	XP_026179300	UPI000E456FA2

Gene Model

Click here to download ENSMAMG00000006190's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006190's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000006190	lsm4	69	32.673	ENSMAMG00000010053	si:ch73-14h10.2	60	35.000
ENSMAMG00000006190	lsm4	76	34.259	ENSMAMG00000007761	-	97	31.111

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006190	lsm4	77	94.545	ENSG00000130520	LSM4	99	79.710	Homo_sapiens
ENSMAMG00000006190	lsm4	100	91.391	ENSAPOG00000005643	lsm4	100	91.391	Acanthochromis_polyacanthus
ENSMAMG00000006190	lsm4	61	98.851	ENSAMEG00000011162	LSM4	93	79.562	Ailuropoda_melanoleuca
ENSMAMG00000006190	lsm4	100	93.243	ENSAOCG00000006414	lsm4	100	93.243	Amphiprion_ocellaris
ENSMAMG00000006190	lsm4	100	92.617	ENSAPEG00000006238	lsm4	100	92.617	Amphiprion_percula
ENSMAMG00000006190	lsm4	100	88.816	ENSATEG00000016559	lsm4	100	89.474	Anabas_testudineus
ENSMAMG00000006190	lsm4	62	98.864	ENSANAG00000034659	LSM4	99	79.710	Aotus_nancymaae
ENSMAMG00000006190	lsm4	100	93.878	ENSACLG00000022738	lsm4	100	93.878	Astatotilapia_calliptera
ENSMAMG00000006190	lsm4	100	90.210	ENSAMXG00000016932	lsm4	100	90.210	Astyanax_mexicanus
ENSMAMG00000006190	lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	79.710	Bos_taurus
ENSMAMG00000006190	lsm4	58	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSMAMG00000006190	lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	79.710	Callithrix_jacchus
ENSMAMG00000006190	lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	79.710	Canis_familiaris
ENSMAMG00000006190	lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	79.710	Canis_lupus_dingo
ENSMAMG00000006190	lsm4	61	98.851	ENSCHIG00000010928	LSM4	90	79.562	Capra_hircus
ENSMAMG00000006190	lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	78.986	Carlito_syrichta
ENSMAMG00000006190	lsm4	62	97.727	ENSCAPG00000014140	LSM4	96	80.000	Cavia_aperea
ENSMAMG00000006190	lsm4	62	97.727	ENSCPOG00000024117	LSM4	96	80.000	Cavia_porcellus
ENSMAMG00000006190	lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	79.710	Cebus_capucinus
ENSMAMG00000006190	lsm4	76	94.495	ENSCATG00000029311	LSM4	99	79.710	Cercocebus_atys
ENSMAMG00000006190	lsm4	96	76.642	ENSCLAG00000010828	LSM4	99	85.612	Chinchilla_lanigera
ENSMAMG00000006190	lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	79.710	Chlorocebus_sabaeus
ENSMAMG00000006190	lsm4	94	80.597	ENSCPBG00000012925	LSM4	96	88.889	Chrysemys_picta_bellii
ENSMAMG00000006190	lsm4	61	93.023	ENSCING00000007519	-	96	72.519	Ciona_intestinalis
ENSMAMG00000006190	lsm4	61	93.023	ENSCSAVG00000008596	-	97	70.290	Ciona_savignyi
ENSMAMG00000006190	lsm4	62	98.864	ENSCANG00000043686	LSM4	99	79.710	Colobus_angolensis_palliatus
ENSMAMG00000006190	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	77.536	Cricetulus_griseus_chok1gshd
ENSMAMG00000006190	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	99	77.372	Cricetulus_griseus_crigri
ENSMAMG00000006190	lsm4	100	95.070	ENSCSEG00000016127	lsm4	100	95.070	Cynoglossus_semilaevis
ENSMAMG00000006190	lsm4	89	92.969	ENSCVAG00000021828	lsm4	98	92.969	Cyprinodon_variegatus
ENSMAMG00000006190	lsm4	100	93.706	ENSCVAG00000010601	lsm4	100	93.706	Cyprinodon_variegatus
ENSMAMG00000006190	lsm4	96	85.315	ENSDARG00000023852	lsm4	99	88.112	Danio_rerio
ENSMAMG00000006190	lsm4	96	76.642	ENSDORG00000024225	Lsm4	99	78.986	Dipodomys_ordii
ENSMAMG00000006190	lsm4	70	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSMAMG00000006190	lsm4	86	74.590	ENSETEG00000007762	-	98	77.236	Echinops_telfairi
ENSMAMG00000006190	lsm4	53	93.333	ENSEBUG00000003639	-	84	68.504	Eptatretus_burgeri
ENSMAMG00000006190	lsm4	62	98.864	ENSECAG00000010141	LSM4	56	79.710	Equus_caballus
ENSMAMG00000006190	lsm4	93	91.667	ENSELUG00000012821	lsm4	100	91.667	Esox_lucius
ENSMAMG00000006190	lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	79.710	Felis_catus
ENSMAMG00000006190	lsm4	94	79.699	ENSFALG00000009478	LSM4	96	88.806	Ficedula_albicollis
ENSMAMG00000006190	lsm4	61	98.851	ENSFDAG00000010124	LSM4	99	79.562	Fukomys_damarensis
ENSMAMG00000006190	lsm4	99	82.993	ENSGMOG00000007729	lsm4	99	83.673	Gadus_morhua
ENSMAMG00000006190	lsm4	94	79.851	ENSGALG00000003385	LSM4	96	88.889	Gallus_gallus
ENSMAMG00000006190	lsm4	100	93.706	ENSGAFG00000004903	lsm4	97	91.406	Gambusia_affinis
ENSMAMG00000006190	lsm4	100	84.667	ENSGACG00000008140	lsm4	100	88.667	Gasterosteus_aculeatus
ENSMAMG00000006190	lsm4	94	80.597	ENSGAGG00000017812	LSM4	96	88.889	Gopherus_agassizii
ENSMAMG00000006190	lsm4	77	94.545	ENSGGOG00000012914	-	99	79.710	Gorilla_gorilla
ENSMAMG00000006190	lsm4	100	94.521	ENSHBUG00000008858	lsm4	80	94.521	Haplochromis_burtoni
ENSMAMG00000006190	lsm4	96	76.642	ENSHGLG00000006568	LSM4	99	84.892	Heterocephalus_glaber_female
ENSMAMG00000006190	lsm4	65	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSMAMG00000006190	lsm4	100	95.775	ENSHCOG00000008819	lsm4	100	95.775	Hippocampus_comes
ENSMAMG00000006190	lsm4	100	90.210	ENSIPUG00000005368	Lsm4	100	90.210	Ictalurus_punctatus
ENSMAMG00000006190	lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	79.710	Ictidomys_tridecemlineatus
ENSMAMG00000006190	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	78.261	Jaculus_jaculus
ENSMAMG00000006190	lsm4	100	92.361	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSMAMG00000006190	lsm4	100	92.617	ENSLBEG00000027930	lsm4	100	92.617	Labrus_bergylta
ENSMAMG00000006190	lsm4	96	84.672	ENSLACG00000015861	LSM4	99	84.173	Latimeria_chalumnae
ENSMAMG00000006190	lsm4	89	90.625	ENSLOCG00000002025	lsm4	100	88.811	Lepisosteus_oculatus
ENSMAMG00000006190	lsm4	96	77.206	ENSLAFG00000017459	LSM4	98	79.562	Loxodonta_africana
ENSMAMG00000006190	lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	79.710	Macaca_fascicularis
ENSMAMG00000006190	lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	79.710	Macaca_mulatta
ENSMAMG00000006190	lsm4	73	94.231	ENSMNEG00000042899	LSM4	99	79.710	Macaca_nemestrina
ENSMAMG00000006190	lsm4	76	94.495	ENSMLEG00000027948	LSM4	99	79.710	Mandrillus_leucophaeus
ENSMAMG00000006190	lsm4	100	94.521	ENSMZEG00005016420	lsm4	100	94.521	Maylandia_zebra
ENSMAMG00000006190	lsm4	94	78.519	ENSMGAG00000004976	LSM4	96	81.955	Meleagris_gallopavo
ENSMAMG00000006190	lsm4	96	76.642	ENSMICG00000000222	LSM4	99	78.986	Microcebus_murinus
ENSMAMG00000006190	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	77.536	Microtus_ochrogaster
ENSMAMG00000006190	lsm4	86	76.230	ENSMODG00000015044	-	98	78.862	Monodelphis_domestica
ENSMAMG00000006190	lsm4	100	94.406	ENSMALG00000018159	lsm4	100	94.406	Monopterus_albus
ENSMAMG00000006190	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	77.536	Mus_caroli
ENSMAMG00000006190	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSMAMG00000006190	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	77.536	Mus_pahari
ENSMAMG00000006190	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	77.536	Mus_spretus
ENSMAMG00000006190	lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	79.710	Mustela_putorius_furo
ENSMAMG00000006190	lsm4	61	98.851	ENSMLUG00000004010	LSM4	98	79.562	Myotis_lucifugus
ENSMAMG00000006190	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	77.536	Nannospalax_galili
ENSMAMG00000006190	lsm4	76	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSMAMG00000006190	lsm4	51	95.890	ENSMEUG00000013229	LSM4	98	74.797	Notamacropus_eugenii
ENSMAMG00000006190	lsm4	54	97.403	ENSOPRG00000005575	LSM4	98	75.610	Ochotona_princeps
ENSMAMG00000006190	lsm4	96	77.372	ENSODEG00000020549	-	99	79.710	Octodon_degus
ENSMAMG00000006190	lsm4	62	88.636	ENSODEG00000004519	-	99	67.114	Octodon_degus
ENSMAMG00000006190	lsm4	65	54.206	ENSODEG00000011712	-	98	51.825	Octodon_degus
ENSMAMG00000006190	lsm4	100	93.878	ENSONIG00000012724	lsm4	100	93.878	Oreochromis_niloticus
ENSMAMG00000006190	lsm4	61	94.505	ENSOANG00000007434	LSM4	97	80.315	Ornithorhynchus_anatinus
ENSMAMG00000006190	lsm4	100	93.750	ENSORLG00000008391	lsm4	100	93.750	Oryzias_latipes
ENSMAMG00000006190	lsm4	100	94.444	ENSORLG00020014829	lsm4	100	94.444	Oryzias_latipes_hni
ENSMAMG00000006190	lsm4	100	95.139	ENSORLG00015010205	lsm4	100	95.139	Oryzias_latipes_hsok
ENSMAMG00000006190	lsm4	100	93.056	ENSOMEG00000003606	lsm4	100	93.056	Oryzias_melastigma
ENSMAMG00000006190	lsm4	69	95.918	ENSOGAG00000027992	LSM4	99	80.000	Otolemur_garnettii
ENSMAMG00000006190	lsm4	85	76.033	ENSOARG00000012553	LSM4	95	78.689	Ovis_aries
ENSMAMG00000006190	lsm4	77	94.545	ENSPPAG00000044045	-	99	79.710	Pan_paniscus
ENSMAMG00000006190	lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	79.710	Panthera_pardus
ENSMAMG00000006190	lsm4	61	98.851	ENSPTIG00000006306	LSM4	99	79.562	Panthera_tigris_altaica
ENSMAMG00000006190	lsm4	77	94.545	ENSPTRG00000031470	LSM4	99	79.710	Pan_troglodytes
ENSMAMG00000006190	lsm4	76	94.495	ENSPANG00000014399	LSM4	99	79.710	Papio_anubis
ENSMAMG00000006190	lsm4	100	83.803	ENSPKIG00000006154	lsm4	100	89.510	Paramormyrops_kingsleyae
ENSMAMG00000006190	lsm4	94	79.699	ENSPSIG00000012358	LSM4	96	88.060	Pelodiscus_sinensis
ENSMAMG00000006190	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	77.536	Peromyscus_maniculatus_bairdii
ENSMAMG00000006190	lsm4	100	93.007	ENSPFOG00000000570	lsm4	76	93.007	Poecilia_formosa
ENSMAMG00000006190	lsm4	100	92.308	ENSPLAG00000016267	lsm4	100	92.308	Poecilia_latipinna
ENSMAMG00000006190	lsm4	100	93.007	ENSPMEG00000016378	lsm4	100	93.007	Poecilia_mexicana
ENSMAMG00000006190	lsm4	100	93.007	ENSPREG00000011290	lsm4	76	93.007	Poecilia_reticulata
ENSMAMG00000006190	lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	79.710	Pongo_abelii
ENSMAMG00000006190	lsm4	86	74.590	ENSPCAG00000008513	LSM4	98	77.236	Procavia_capensis
ENSMAMG00000006190	lsm4	96	76.642	ENSPCOG00000019837	LSM4	99	78.986	Propithecus_coquereli
ENSMAMG00000006190	lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	79.710	Pteropus_vampyrus
ENSMAMG00000006190	lsm4	100	94.521	ENSPNYG00000016794	lsm4	100	94.521	Pundamilia_nyererei
ENSMAMG00000006190	lsm4	95	91.852	ENSPNAG00000016598	lsm4	100	91.852	Pygocentrus_nattereri
ENSMAMG00000006190	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	77.536	Rattus_norvegicus
ENSMAMG00000006190	lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	79.710	Rhinopithecus_bieti
ENSMAMG00000006190	lsm4	76	94.495	ENSRROG00000045706	LSM4	99	79.710	Rhinopithecus_roxellana
ENSMAMG00000006190	lsm4	58	40.860	YER112W	LSM4	55	38.235	Saccharomyces_cerevisiae
ENSMAMG00000006190	lsm4	52	98.649	ENSSBOG00000022455	LSM4	98	77.419	Saimiri_boliviensis_boliviensis
ENSMAMG00000006190	lsm4	96	78.832	ENSSHAG00000011559	LSM4	99	81.159	Sarcophilus_harrisii
ENSMAMG00000006190	lsm4	100	89.510	ENSSFOG00015021067	lsm4	100	89.510	Scleropages_formosus
ENSMAMG00000006190	lsm4	100	82.000	ENSSMAG00000021020	lsm4	100	92.000	Scophthalmus_maximus
ENSMAMG00000006190	lsm4	100	83.234	ENSSDUG00000009588	lsm4	100	83.234	Seriola_dumerili
ENSMAMG00000006190	lsm4	100	82.738	ENSSLDG00000006827	lsm4	100	82.738	Seriola_lalandi_dorsalis
ENSMAMG00000006190	lsm4	61	100.000	ENSSPUG00000010166	LSM4	70	83.740	Sphenodon_punctatus
ENSMAMG00000006190	lsm4	100	91.391	ENSSPAG00000011615	lsm4	100	91.391	Stegastes_partitus
ENSMAMG00000006190	lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	79.710	Sus_scrofa
ENSMAMG00000006190	lsm4	100	95.804	ENSTRUG00000021737	lsm4	100	95.804	Takifugu_rubripes
ENSMAMG00000006190	lsm4	100	88.889	ENSTNIG00000010191	lsm4	100	88.889	Tetraodon_nigroviridis
ENSMAMG00000006190	lsm4	77	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSMAMG00000006190	lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	79.710	Ursus_maritimus
ENSMAMG00000006190	lsm4	61	98.851	ENSVVUG00000008136	LSM4	70	79.562	Vulpes_vulpes
ENSMAMG00000006190	lsm4	96	83.942	ENSXETG00000024933	lsm4	99	87.681	Xenopus_tropicalis
ENSMAMG00000006190	lsm4	100	93.007	ENSXMAG00000026672	lsm4	76	93.007	Xiphophorus_maculatus