EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000006229 (Gene tree)
Gene ID: 113134026
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 14993 bases
Position: chrOOHQ01000035.1:10626982-10641974
Accession: 113134026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009272	UPF1_Zn_bind	PF09416.10	2.1e-75	1	1
ENSMAMP00000009272	ResIII	PF04851.15	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000009519	-	7328	-	ENSMAMP00000009272	1115 (aa)	XP_026168995	UPI000E461984

Gene Model

Click here to download ENSMAMG00000006229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006229's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000006229	upf1	100	92.761	ENSMAMG00000006231	-	100	92.225

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006229	upf1	100	90.589	ENSG00000005007	UPF1	100	89.622	Homo_sapiens
ENSMAMG00000006229	upf1	100	92.844	ENSAPOG00000010916	-	100	92.218	Acanthochromis_polyacanthus
ENSMAMG00000006229	upf1	100	98.297	ENSAPOG00000023773	upf1	100	98.297	Acanthochromis_polyacanthus
ENSMAMG00000006229	upf1	100	90.114	ENSAMEG00000011474	UPF1	100	89.151	Ailuropoda_melanoleuca
ENSMAMG00000006229	upf1	93	92.706	ENSACIG00000010985	-	100	91.563	Amphilophus_citrinellus
ENSMAMG00000006229	upf1	100	96.237	ENSACIG00000019949	upf1	100	96.237	Amphilophus_citrinellus
ENSMAMG00000006229	upf1	100	98.387	ENSAOCG00000018519	upf1	100	98.387	Amphiprion_ocellaris
ENSMAMG00000006229	upf1	100	92.844	ENSAOCG00000006352	-	100	92.218	Amphiprion_ocellaris
ENSMAMG00000006229	upf1	100	98.387	ENSAPEG00000016344	upf1	100	98.387	Amphiprion_percula
ENSMAMG00000006229	upf1	100	92.755	ENSAPEG00000006292	-	100	92.218	Amphiprion_percula
ENSMAMG00000006229	upf1	100	98.386	ENSATEG00000017867	upf1	100	98.386	Anabas_testudineus
ENSMAMG00000006229	upf1	100	92.844	ENSATEG00000016606	-	100	92.129	Anabas_testudineus
ENSMAMG00000006229	upf1	95	92.257	ENSAPLG00000009175	UPF1	100	91.138	Anas_platyrhynchos
ENSMAMG00000006229	upf1	95	90.552	ENSANAG00000024107	UPF1	95	89.429	Aotus_nancymaae
ENSMAMG00000006229	upf1	100	96.326	ENSACLG00000007181	upf1	100	96.326	Astatotilapia_calliptera
ENSMAMG00000006229	upf1	100	92.576	ENSACLG00000022630	-	100	92.039	Astatotilapia_calliptera
ENSMAMG00000006229	upf1	100	93.638	ENSAMXG00000042187	upf1	100	93.100	Astyanax_mexicanus
ENSMAMG00000006229	upf1	100	90.131	ENSBTAG00000020922	UPF1	100	89.170	Bos_taurus
ENSMAMG00000006229	upf1	80	54.464	WBGene00004880	smg-2	83	54.464	Caenorhabditis_elegans
ENSMAMG00000006229	upf1	100	89.721	ENSCJAG00000019627	UPF1	100	88.763	Callithrix_jacchus
ENSMAMG00000006229	upf1	100	89.895	ENSCAFG00000014578	UPF1	100	88.937	Canis_familiaris
ENSMAMG00000006229	upf1	100	90.765	ENSCAFG00020012347	UPF1	100	89.798	Canis_lupus_dingo
ENSMAMG00000006229	upf1	100	91.005	ENSCHIG00000011018	UPF1	100	90.035	Capra_hircus
ENSMAMG00000006229	upf1	95	91.955	ENSTSYG00000008877	UPF1	98	90.833	Carlito_syrichta
ENSMAMG00000006229	upf1	96	91.304	ENSCAPG00000005758	UPF1	95	90.739	Cavia_aperea
ENSMAMG00000006229	upf1	100	91.054	ENSCPOG00000025463	UPF1	100	89.903	Cavia_porcellus
ENSMAMG00000006229	upf1	100	90.589	ENSCCAG00000032175	UPF1	100	89.622	Cebus_capucinus
ENSMAMG00000006229	upf1	94	91.925	ENSCATG00000040306	UPF1	98	90.645	Cercocebus_atys
ENSMAMG00000006229	upf1	95	91.955	ENSCLAG00000004037	UPF1	99	90.833	Chinchilla_lanigera
ENSMAMG00000006229	upf1	100	90.589	ENSCSAG00000005276	UPF1	100	89.622	Chlorocebus_sabaeus
ENSMAMG00000006229	upf1	100	91.335	ENSCPBG00000012513	UPF1	100	90.186	Chrysemys_picta_bellii
ENSMAMG00000006229	upf1	76	80.164	ENSCING00000021399	-	99	79.812	Ciona_intestinalis
ENSMAMG00000006229	upf1	99	72.011	ENSCSAVG00000006533	-	99	71.555	Ciona_savignyi
ENSMAMG00000006229	upf1	95	91.862	ENSCANG00000029819	UPF1	97	90.739	Colobus_angolensis_palliatus
ENSMAMG00000006229	upf1	100	90.813	ENSCGRG00001021067	Upf1	100	89.841	Cricetulus_griseus_chok1gshd
ENSMAMG00000006229	upf1	95	91.674	ENSCGRG00000013480	Upf1	98	90.552	Cricetulus_griseus_crigri
ENSMAMG00000006229	upf1	100	89.884	ENSCSEG00000017239	upf1	100	89.615	Cynoglossus_semilaevis
ENSMAMG00000006229	upf1	100	93.286	ENSCSEG00000016159	-	100	91.943	Cynoglossus_semilaevis
ENSMAMG00000006229	upf1	100	92.129	ENSCVAG00000010561	upf1	100	91.592	Cyprinodon_variegatus
ENSMAMG00000006229	upf1	100	93.459	ENSDARG00000016302	upf1	100	92.832	Danio_rerio
ENSMAMG00000006229	upf1	95	89.533	ENSDORG00000009984	Upf1	95	88.505	Dipodomys_ordii
ENSMAMG00000006229	upf1	83	72.572	FBgn0030354	Upf1	81	71.443	Drosophila_melanogaster
ENSMAMG00000006229	upf1	53	87.252	ENSEBUG00000010069	upf1	96	87.583	Eptatretus_burgeri
ENSMAMG00000006229	upf1	100	91.093	ENSEASG00005006549	UPF1	100	90.035	Equus_asinus_asinus
ENSMAMG00000006229	upf1	100	91.093	ENSECAG00000010639	UPF1	100	90.035	Equus_caballus
ENSMAMG00000006229	upf1	100	94.086	ENSELUG00000020917	upf1	100	93.369	Esox_lucius
ENSMAMG00000006229	upf1	100	92.335	ENSELUG00000012916	-	100	92.157	Esox_lucius
ENSMAMG00000006229	upf1	100	89.895	ENSFCAG00000009757	UPF1	100	88.937	Felis_catus
ENSMAMG00000006229	upf1	95	92.864	ENSFALG00000009312	UPF1	96	91.643	Ficedula_albicollis
ENSMAMG00000006229	upf1	95	91.862	ENSFDAG00000014816	UPF1	99	90.739	Fukomys_damarensis
ENSMAMG00000006229	upf1	100	92.864	ENSFHEG00000006428	upf1	100	91.436	Fundulus_heteroclitus
ENSMAMG00000006229	upf1	87	95.012	ENSFHEG00000016276	-	96	95.012	Fundulus_heteroclitus
ENSMAMG00000006229	upf1	100	90.885	ENSGMOG00000007541	upf1	100	90.619	Gadus_morhua
ENSMAMG00000006229	upf1	100	91.013	ENSGALG00000003220	UPF1	100	89.868	Gallus_gallus
ENSMAMG00000006229	upf1	100	92.308	ENSGAFG00000004831	upf1	100	91.682	Gambusia_affinis
ENSMAMG00000006229	upf1	62	96.542	ENSGAFG00000015443	-	85	96.542	Gambusia_affinis
ENSMAMG00000006229	upf1	100	91.474	ENSGAGG00000022217	UPF1	100	90.764	Gopherus_agassizii
ENSMAMG00000006229	upf1	95	92.817	ENSGGOG00000002608	UPF1	99	91.682	Gorilla_gorilla
ENSMAMG00000006229	upf1	85	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMAMG00000006229	upf1	88	96.154	ENSHBUG00000014694	upf1	100	96.154	Haplochromis_burtoni
ENSMAMG00000006229	upf1	100	89.634	ENSHGLG00000010900	UPF1	100	88.850	Heterocephalus_glaber_female
ENSMAMG00000006229	upf1	95	90.084	ENSHGLG00100005904	UPF1	96	89.149	Heterocephalus_glaber_male
ENSMAMG00000006229	upf1	100	92.218	ENSHCOG00000008918	upf1	100	92.129	Hippocampus_comes
ENSMAMG00000006229	upf1	100	93.728	ENSIPUG00000005108	UPF1	100	93.190	Ictalurus_punctatus
ENSMAMG00000006229	upf1	100	90.501	ENSSTOG00000009196	UPF1	100	89.622	Ictidomys_tridecemlineatus
ENSMAMG00000006229	upf1	100	90.096	ENSJJAG00000023151	Upf1	100	89.132	Jaculus_jaculus
ENSMAMG00000006229	upf1	100	92.218	ENSKMAG00000004962	upf1	100	91.592	Kryptolebias_marmoratus
ENSMAMG00000006229	upf1	100	92.583	ENSLBEG00000027848	-	100	91.868	Labrus_bergylta
ENSMAMG00000006229	upf1	100	97.491	ENSLBEG00000014862	upf1	100	97.491	Labrus_bergylta
ENSMAMG00000006229	upf1	64	92.297	ENSLACG00000008482	UPF1	100	90.336	Latimeria_chalumnae
ENSMAMG00000006229	upf1	100	93.286	ENSLOCG00000002072	upf1	100	92.659	Lepisosteus_oculatus
ENSMAMG00000006229	upf1	100	89.791	ENSLAFG00000014963	UPF1	100	88.743	Loxodonta_africana
ENSMAMG00000006229	upf1	100	90.351	ENSMFAG00000037748	UPF1	100	89.386	Macaca_fascicularis
ENSMAMG00000006229	upf1	100	90.114	ENSMMUG00000023286	UPF1	100	89.151	Macaca_mulatta
ENSMAMG00000006229	upf1	100	90.351	ENSMNEG00000000046	UPF1	100	89.386	Macaca_nemestrina
ENSMAMG00000006229	upf1	95	91.862	ENSMLEG00000028404	UPF1	99	90.739	Mandrillus_leucophaeus
ENSMAMG00000006229	upf1	100	97.312	ENSMZEG00005003489	upf1	100	97.312	Maylandia_zebra
ENSMAMG00000006229	upf1	100	92.576	ENSMZEG00005016386	-	100	92.039	Maylandia_zebra
ENSMAMG00000006229	upf1	95	91.869	ENSMGAG00000004745	UPF1	100	90.748	Meleagris_gallopavo
ENSMAMG00000006229	upf1	95	91.674	ENSMAUG00000011398	Upf1	95	90.552	Mesocricetus_auratus
ENSMAMG00000006229	upf1	100	90.765	ENSMICG00000001659	UPF1	100	89.710	Microcebus_murinus
ENSMAMG00000006229	upf1	100	89.939	ENSMOCG00000005699	Upf1	100	89.064	Microtus_ochrogaster
ENSMAMG00000006229	upf1	100	95.785	ENSMMOG00000007881	upf1	100	95.785	Mola_mola
ENSMAMG00000006229	upf1	95	90.301	ENSMMOG00000007537	-	99	89.642	Mola_mola
ENSMAMG00000006229	upf1	100	89.922	ENSMODG00000003689	UPF1	100	89.053	Monodelphis_domestica
ENSMAMG00000006229	upf1	100	95.247	ENSMALG00000000144	upf1	100	95.336	Monopterus_albus
ENSMAMG00000006229	upf1	100	91.444	ENSMALG00000018100	-	100	90.820	Monopterus_albus
ENSMAMG00000006229	upf1	100	90.724	MGP_CAROLIEiJ_G0031142	Upf1	100	89.753	Mus_caroli
ENSMAMG00000006229	upf1	100	90.724	ENSMUSG00000058301	Upf1	100	89.753	Mus_musculus
ENSMAMG00000006229	upf1	100	90.724	MGP_PahariEiJ_G0021607	Upf1	100	89.753	Mus_pahari
ENSMAMG00000006229	upf1	100	90.724	MGP_SPRETEiJ_G0032260	Upf1	100	89.753	Mus_spretus
ENSMAMG00000006229	upf1	100	90.765	ENSMPUG00000015516	UPF1	100	89.798	Mustela_putorius_furo
ENSMAMG00000006229	upf1	99	90.644	ENSMLUG00000012122	UPF1	99	89.673	Myotis_lucifugus
ENSMAMG00000006229	upf1	100	89.529	ENSNGAG00000024107	Upf1	100	88.569	Nannospalax_galili
ENSMAMG00000006229	upf1	100	89.215	ENSNBRG00000022069	-	100	91.109	Neolamprologus_brichardi
ENSMAMG00000006229	upf1	100	93.638	ENSNBRG00000000670	upf1	100	93.004	Neolamprologus_brichardi
ENSMAMG00000006229	upf1	95	86.249	ENSNLEG00000006062	UPF1	99	85.126	Nomascus_leucogenys
ENSMAMG00000006229	upf1	83	85.795	ENSMEUG00000014146	-	83	83.523	Notamacropus_eugenii
ENSMAMG00000006229	upf1	95	86.295	ENSOPRG00000014018	UPF1	88	90.033	Ochotona_princeps
ENSMAMG00000006229	upf1	100	90.957	ENSODEG00000012426	UPF1	100	89.982	Octodon_degus
ENSMAMG00000006229	upf1	100	92.576	ENSONIG00000012729	-	100	92.039	Oreochromis_niloticus
ENSMAMG00000006229	upf1	100	97.401	ENSONIG00000010452	upf1	100	97.401	Oreochromis_niloticus
ENSMAMG00000006229	upf1	100	90.227	ENSOANG00000004568	UPF1	100	89.092	Ornithorhynchus_anatinus
ENSMAMG00000006229	upf1	100	92.576	ENSORLG00000008453	upf1	100	91.503	Oryzias_latipes
ENSMAMG00000006229	upf1	100	92.493	ENSORLG00020014758	upf1	100	91.421	Oryzias_latipes_hni
ENSMAMG00000006229	upf1	100	92.493	ENSORLG00015010165	upf1	100	91.421	Oryzias_latipes_hsok
ENSMAMG00000006229	upf1	100	92.934	ENSOMEG00000003665	upf1	100	91.860	Oryzias_melastigma
ENSMAMG00000006229	upf1	100	90.677	ENSOGAG00000012866	UPF1	100	89.710	Otolemur_garnettii
ENSMAMG00000006229	upf1	96	89.040	ENSOARG00000010739	UPF1	100	87.953	Ovis_aries
ENSMAMG00000006229	upf1	95	91.862	ENSPPAG00000043884	UPF1	96	90.739	Pan_paniscus
ENSMAMG00000006229	upf1	100	89.895	ENSPPRG00000023470	UPF1	100	88.937	Panthera_pardus
ENSMAMG00000006229	upf1	95	90.755	ENSPTIG00000010159	UPF1	99	89.623	Panthera_tigris_altaica
ENSMAMG00000006229	upf1	100	90.351	ENSPTRG00000010721	UPF1	100	89.386	Pan_troglodytes
ENSMAMG00000006229	upf1	100	90.351	ENSPANG00000008847	UPF1	100	89.386	Papio_anubis
ENSMAMG00000006229	upf1	90	95.626	ENSPKIG00000006069	upf1	97	95.626	Paramormyrops_kingsleyae
ENSMAMG00000006229	upf1	70	91.315	ENSPSIG00000009491	UPF1	100	89.655	Pelodiscus_sinensis
ENSMAMG00000006229	upf1	100	92.576	ENSPMGG00000017327	upf1	100	90.828	Periophthalmus_magnuspinnatus
ENSMAMG00000006229	upf1	100	89.939	ENSPEMG00000001085	Upf1	100	88.976	Peromyscus_maniculatus_bairdii
ENSMAMG00000006229	upf1	100	86.667	ENSPMAG00000001206	upf1	100	85.600	Petromyzon_marinus
ENSMAMG00000006229	upf1	100	91.285	ENSPCIG00000006156	UPF1	100	90.317	Phascolarctos_cinereus
ENSMAMG00000006229	upf1	100	94.260	ENSPLAG00000018155	-	100	93.094	Poecilia_latipinna
ENSMAMG00000006229	upf1	100	92.487	ENSPLAG00000016232	-	100	91.771	Poecilia_latipinna
ENSMAMG00000006229	upf1	100	92.404	ENSPMEG00000016319	-	100	91.689	Poecilia_mexicana
ENSMAMG00000006229	upf1	100	93.991	ENSPMEG00000011443	-	100	93.004	Poecilia_mexicana
ENSMAMG00000006229	upf1	100	92.308	ENSPREG00000011247	-	100	91.592	Poecilia_reticulata
ENSMAMG00000006229	upf1	100	94.002	ENSPREG00000009940	upf1	100	92.927	Poecilia_reticulata
ENSMAMG00000006229	upf1	100	84.756	ENSPPYG00000009752	UPF1	100	83.972	Pongo_abelii
ENSMAMG00000006229	upf1	76	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSMAMG00000006229	upf1	100	90.455	ENSPCOG00000023813	UPF1	100	89.405	Propithecus_coquereli
ENSMAMG00000006229	upf1	67	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMAMG00000006229	upf1	100	92.576	ENSPNYG00000016731	-	100	92.039	Pundamilia_nyererei
ENSMAMG00000006229	upf1	100	97.312	ENSPNYG00000003694	upf1	100	97.312	Pundamilia_nyererei
ENSMAMG00000006229	upf1	100	93.548	ENSPNAG00000025614	upf1	100	93.011	Pygocentrus_nattereri
ENSMAMG00000006229	upf1	100	90.724	ENSRNOG00000020134	Upf1	100	89.753	Rattus_norvegicus
ENSMAMG00000006229	upf1	95	89.523	ENSRBIG00000013894	UPF1	98	91.407	Rhinopithecus_bieti
ENSMAMG00000006229	upf1	95	91.862	ENSRROG00000040935	UPF1	98	91.407	Rhinopithecus_roxellana
ENSMAMG00000006229	upf1	73	56.916	YMR080C	NAM7	84	56.916	Saccharomyces_cerevisiae
ENSMAMG00000006229	upf1	95	91.620	ENSSBOG00000023632	UPF1	96	90.503	Saimiri_boliviensis_boliviensis
ENSMAMG00000006229	upf1	95	92.250	ENSSHAG00000010499	UPF1	100	91.130	Sarcophilus_harrisii
ENSMAMG00000006229	upf1	100	93.381	ENSSFOG00015021095	upf1	100	92.576	Scleropages_formosus
ENSMAMG00000006229	upf1	100	92.672	ENSSMAG00000021018	-	100	91.868	Scophthalmus_maximus
ENSMAMG00000006229	upf1	100	96.685	ENSSMAG00000005055	upf1	100	96.685	Scophthalmus_maximus
ENSMAMG00000006229	upf1	100	99.013	ENSSDUG00000013320	upf1	100	99.013	Seriola_dumerili
ENSMAMG00000006229	upf1	100	92.851	ENSSDUG00000009629	-	100	92.225	Seriola_dumerili
ENSMAMG00000006229	upf1	100	92.851	ENSSLDG00000006878	-	100	92.225	Seriola_lalandi_dorsalis
ENSMAMG00000006229	upf1	100	98.117	ENSSLDG00000020868	upf1	100	98.117	Seriola_lalandi_dorsalis
ENSMAMG00000006229	upf1	100	91.312	ENSSPUG00000010538	UPF1	100	90.337	Sphenodon_punctatus
ENSMAMG00000006229	upf1	100	93.113	ENSSPAG00000011521	-	100	92.129	Stegastes_partitus
ENSMAMG00000006229	upf1	100	94.350	ENSSPAG00000000003	upf1	100	94.350	Stegastes_partitus
ENSMAMG00000006229	upf1	100	90.917	ENSSSCG00000039301	UPF1	99	91.604	Sus_scrofa
ENSMAMG00000006229	upf1	81	87.234	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSMAMG00000006229	upf1	100	91.860	ENSTRUG00000005131	-	100	90.966	Takifugu_rubripes
ENSMAMG00000006229	upf1	100	96.326	ENSTRUG00000000150	upf1	100	96.326	Takifugu_rubripes
ENSMAMG00000006229	upf1	100	87.302	ENSTTRG00000011544	UPF1	100	86.243	Tursiops_truncatus
ENSMAMG00000006229	upf1	100	90.765	ENSUAMG00000007093	UPF1	100	89.798	Ursus_americanus
ENSMAMG00000006229	upf1	95	92.830	ENSUMAG00000006652	UPF1	99	92.057	Ursus_maritimus
ENSMAMG00000006229	upf1	100	90.765	ENSVVUG00000007797	UPF1	100	89.798	Vulpes_vulpes
ENSMAMG00000006229	upf1	100	78.559	ENSXETG00000013602	upf1	100	77.431	Xenopus_tropicalis
ENSMAMG00000006229	upf1	97	92.672	ENSXCOG00000015275	-	96	92.301	Xiphophorus_couchianus
ENSMAMG00000006229	upf1	94	92.462	ENSXCOG00000005764	-	99	91.794	Xiphophorus_couchianus
ENSMAMG00000006229	upf1	100	92.315	ENSXMAG00000002540	-	100	91.689	Xiphophorus_maculatus
ENSMAMG00000006229	upf1	100	92.825	ENSXMAG00000001703	-	100	92.466	Xiphophorus_maculatus