EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000006231 (Gene tree)
Gene ID: 113139713
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 12749 bases
Position: chrOOHQ01000042.1:6198240-6210988
Accession: 113139713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009271	UPF1_Zn_bind	PF09416.10	1.1e-74	1	1
ENSMAMP00000009271	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000009518	-	3539	-	ENSMAMP00000009271	1102 (aa)	XP_026178917	UPI000E458D18

Gene Model

Click here to download ENSMAMG00000006231's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006231's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000006231	-	100	92.225	ENSMAMG00000006229	upf1	100	92.761

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006231	-	100	92.068	ENSG00000005007	UPF1	100	91.622	Homo_sapiens
ENSMAMG00000006231	-	100	99.183	ENSAPOG00000010916	-	100	99.183	Acanthochromis_polyacanthus
ENSMAMG00000006231	-	100	93.044	ENSAPOG00000023773	upf1	100	92.927	Acanthochromis_polyacanthus
ENSMAMG00000006231	-	100	91.748	ENSAMEG00000011474	UPF1	100	91.304	Ailuropoda_melanoleuca
ENSMAMG00000006231	-	100	93.194	ENSACIG00000019949	upf1	100	93.194	Amphilophus_citrinellus
ENSMAMG00000006231	-	93	97.860	ENSACIG00000010985	-	100	97.860	Amphilophus_citrinellus
ENSMAMG00000006231	-	100	92.559	ENSAOCG00000018519	upf1	100	92.927	Amphiprion_ocellaris
ENSMAMG00000006231	-	100	98.820	ENSAOCG00000006352	-	100	98.820	Amphiprion_ocellaris
ENSMAMG00000006231	-	100	98.730	ENSAPEG00000006292	-	100	98.730	Amphiprion_percula
ENSMAMG00000006231	-	100	92.559	ENSAPEG00000016344	upf1	100	92.927	Amphiprion_percula
ENSMAMG00000006231	-	100	91.378	ENSATEG00000017867	upf1	100	92.315	Anabas_testudineus
ENSMAMG00000006231	-	100	98.911	ENSATEG00000016606	-	100	98.911	Anabas_testudineus
ENSMAMG00000006231	-	95	93.845	ENSAPLG00000009175	UPF1	100	93.277	Anas_platyrhynchos
ENSMAMG00000006231	-	95	92.308	ENSANAG00000024107	UPF1	95	91.738	Aotus_nancymaae
ENSMAMG00000006231	-	100	98.457	ENSACLG00000022630	-	100	98.457	Astatotilapia_calliptera
ENSMAMG00000006231	-	100	93.103	ENSACLG00000007181	upf1	100	93.103	Astatotilapia_calliptera
ENSMAMG00000006231	-	100	94.651	ENSAMXG00000042187	upf1	100	94.832	Astyanax_mexicanus
ENSMAMG00000006231	-	100	91.763	ENSBTAG00000020922	UPF1	100	91.320	Bos_taurus
ENSMAMG00000006231	-	90	51.558	WBGene00004880	smg-2	99	49.217	Caenorhabditis_elegans
ENSMAMG00000006231	-	100	91.343	ENSCJAG00000019627	UPF1	100	90.901	Callithrix_jacchus
ENSMAMG00000006231	-	100	91.519	ENSCAFG00000014578	UPF1	100	91.078	Canis_familiaris
ENSMAMG00000006231	-	100	92.246	ENSCAFG00020012347	UPF1	100	91.800	Canis_lupus_dingo
ENSMAMG00000006231	-	100	92.493	ENSCHIG00000011018	UPF1	100	92.046	Capra_hircus
ENSMAMG00000006231	-	95	93.637	ENSTSYG00000008877	UPF1	98	93.067	Carlito_syrichta
ENSMAMG00000006231	-	96	92.582	ENSCAPG00000005758	UPF1	95	92.688	Cavia_aperea
ENSMAMG00000006231	-	100	92.363	ENSCPOG00000025463	UPF1	100	91.824	Cavia_porcellus
ENSMAMG00000006231	-	100	92.068	ENSCCAG00000032175	UPF1	100	91.622	Cebus_capucinus
ENSMAMG00000006231	-	94	93.893	ENSCATG00000040306	UPF1	97	93.321	Cercocebus_atys
ENSMAMG00000006231	-	95	93.542	ENSCLAG00000004037	UPF1	99	92.972	Chinchilla_lanigera
ENSMAMG00000006231	-	100	92.068	ENSCSAG00000005276	UPF1	100	91.622	Chlorocebus_sabaeus
ENSMAMG00000006231	-	100	92.384	ENSCPBG00000012513	UPF1	100	91.846	Chrysemys_picta_bellii
ENSMAMG00000006231	-	77	79.298	ENSCING00000021399	-	99	78.337	Ciona_intestinalis
ENSMAMG00000006231	-	99	72.711	ENSCSAVG00000006533	-	99	72.401	Ciona_savignyi
ENSMAMG00000006231	-	95	93.637	ENSCANG00000029819	UPF1	97	93.067	Colobus_angolensis_palliatus
ENSMAMG00000006231	-	100	92.032	ENSCGRG00001021067	Upf1	100	91.585	Cricetulus_griseus_chok1gshd
ENSMAMG00000006231	-	95	93.162	ENSCGRG00000013480	Upf1	98	92.593	Cricetulus_griseus_crigri
ENSMAMG00000006231	-	100	88.043	ENSCSEG00000017239	upf1	100	87.884	Cynoglossus_semilaevis
ENSMAMG00000006231	-	100	97.822	ENSCSEG00000016159	-	100	97.822	Cynoglossus_semilaevis
ENSMAMG00000006231	-	100	97.731	ENSCVAG00000010561	upf1	100	97.731	Cyprinodon_variegatus
ENSMAMG00000006231	-	100	94.016	ENSDARG00000016302	upf1	100	93.200	Danio_rerio
ENSMAMG00000006231	-	95	91.168	ENSDORG00000009984	Upf1	95	90.598	Dipodomys_ordii
ENSMAMG00000006231	-	86	71.563	FBgn0030354	Upf1	81	71.192	Drosophila_melanogaster
ENSMAMG00000006231	-	54	86.634	ENSEBUG00000010069	upf1	96	86.964	Eptatretus_burgeri
ENSMAMG00000006231	-	100	92.404	ENSEASG00005006549	UPF1	100	91.957	Equus_asinus_asinus
ENSMAMG00000006231	-	100	92.404	ENSECAG00000010639	UPF1	100	91.957	Equus_caballus
ENSMAMG00000006231	-	100	92.509	ENSELUG00000020917	upf1	100	92.058	Esox_lucius
ENSMAMG00000006231	-	100	95.401	ENSELUG00000012916	-	100	94.500	Esox_lucius
ENSMAMG00000006231	-	100	91.431	ENSFCAG00000009757	UPF1	100	90.989	Felis_catus
ENSMAMG00000006231	-	95	94.095	ENSFALG00000009312	UPF1	96	93.524	Ficedula_albicollis
ENSMAMG00000006231	-	95	93.447	ENSFDAG00000014816	UPF1	99	92.877	Fukomys_damarensis
ENSMAMG00000006231	-	100	89.991	ENSFHEG00000006428	upf1	100	89.417	Fundulus_heteroclitus
ENSMAMG00000006231	-	86	98.367	ENSFHEG00000016276	-	96	98.367	Fundulus_heteroclitus
ENSMAMG00000006231	-	100	94.519	ENSGMOG00000007541	upf1	100	94.519	Gadus_morhua
ENSMAMG00000006231	-	100	92.232	ENSGALG00000003220	UPF1	100	91.607	Gallus_gallus
ENSMAMG00000006231	-	100	97.550	ENSGAFG00000004831	upf1	100	97.550	Gambusia_affinis
ENSMAMG00000006231	-	64	92.707	ENSGAFG00000015443	-	88	92.201	Gambusia_affinis
ENSMAMG00000006231	-	100	92.889	ENSGAGG00000022217	UPF1	100	92.529	Gopherus_agassizii
ENSMAMG00000006231	-	95	94.439	ENSGGOG00000002608	UPF1	99	93.864	Gorilla_gorilla
ENSMAMG00000006231	-	90	85.057	ENSHBUG00000014694	upf1	100	87.952	Haplochromis_burtoni
ENSMAMG00000006231	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMAMG00000006231	-	100	90.989	ENSHGLG00000010900	UPF1	100	90.724	Heterocephalus_glaber_female
ENSMAMG00000006231	-	95	91.738	ENSHGLG00100005904	UPF1	96	91.358	Heterocephalus_glaber_male
ENSMAMG00000006231	-	100	97.915	ENSHCOG00000008918	upf1	100	97.915	Hippocampus_comes
ENSMAMG00000006231	-	100	94.651	ENSIPUG00000005108	UPF1	100	94.832	Ictalurus_punctatus
ENSMAMG00000006231	-	100	91.979	ENSSTOG00000009196	UPF1	100	91.533	Ictidomys_tridecemlineatus
ENSMAMG00000006231	-	100	91.111	ENSJJAG00000023151	Upf1	100	90.667	Jaculus_jaculus
ENSMAMG00000006231	-	100	98.185	ENSKMAG00000004962	upf1	100	98.185	Kryptolebias_marmoratus
ENSMAMG00000006231	-	100	91.674	ENSLBEG00000014862	upf1	100	92.122	Labrus_bergylta
ENSMAMG00000006231	-	100	98.276	ENSLBEG00000027848	-	100	98.276	Labrus_bergylta
ENSMAMG00000006231	-	63	94.556	ENSLACG00000008482	UPF1	100	94.556	Latimeria_chalumnae
ENSMAMG00000006231	-	100	95.463	ENSLOCG00000002072	upf1	100	95.463	Lepisosteus_oculatus
ENSMAMG00000006231	-	100	91.062	ENSLAFG00000014963	UPF1	100	90.619	Loxodonta_africana
ENSMAMG00000006231	-	100	91.993	ENSMFAG00000037748	UPF1	100	91.548	Macaca_fascicularis
ENSMAMG00000006231	-	100	91.748	ENSMMUG00000023286	UPF1	100	91.304	Macaca_mulatta
ENSMAMG00000006231	-	100	91.993	ENSMNEG00000000046	UPF1	100	91.548	Macaca_nemestrina
ENSMAMG00000006231	-	95	93.637	ENSMLEG00000028404	UPF1	99	93.067	Mandrillus_leucophaeus
ENSMAMG00000006231	-	100	92.101	ENSMZEG00005003489	upf1	100	92.370	Maylandia_zebra
ENSMAMG00000006231	-	100	98.457	ENSMZEG00005016386	-	100	98.457	Maylandia_zebra
ENSMAMG00000006231	-	95	93.359	ENSMGAG00000004745	UPF1	100	92.789	Meleagris_gallopavo
ENSMAMG00000006231	-	95	93.162	ENSMAUG00000011398	Upf1	95	92.593	Mesocricetus_auratus
ENSMAMG00000006231	-	100	91.979	ENSMICG00000001659	UPF1	100	91.533	Microcebus_murinus
ENSMAMG00000006231	-	100	91.304	ENSMOCG00000005699	Upf1	100	90.949	Microtus_ochrogaster
ENSMAMG00000006231	-	95	96.176	ENSMMOG00000007537	-	99	96.176	Mola_mola
ENSMAMG00000006231	-	100	92.377	ENSMMOG00000007881	upf1	100	92.928	Mola_mola
ENSMAMG00000006231	-	100	91.189	ENSMODG00000003689	UPF1	100	90.837	Monodelphis_domestica
ENSMAMG00000006231	-	100	92.377	ENSMALG00000000144	upf1	100	92.287	Monopterus_albus
ENSMAMG00000006231	-	100	97.016	ENSMALG00000018100	-	100	97.016	Monopterus_albus
ENSMAMG00000006231	-	100	91.943	MGP_CAROLIEiJ_G0031142	Upf1	100	91.495	Mus_caroli
ENSMAMG00000006231	-	100	91.943	ENSMUSG00000058301	Upf1	100	91.495	Mus_musculus
ENSMAMG00000006231	-	100	91.943	MGP_PahariEiJ_G0021607	Upf1	100	91.495	Mus_pahari
ENSMAMG00000006231	-	100	91.943	MGP_SPRETEiJ_G0032260	Upf1	100	91.495	Mus_spretus
ENSMAMG00000006231	-	100	92.246	ENSMPUG00000015516	UPF1	100	91.800	Mustela_putorius_furo
ENSMAMG00000006231	-	99	92.039	ENSMLUG00000012122	UPF1	99	91.592	Myotis_lucifugus
ENSMAMG00000006231	-	100	90.796	ENSNGAG00000024107	Upf1	100	90.354	Nannospalax_galili
ENSMAMG00000006231	-	100	94.838	ENSNBRG00000022069	-	100	97.187	Neolamprologus_brichardi
ENSMAMG00000006231	-	100	91.289	ENSNBRG00000000670	upf1	100	91.289	Neolamprologus_brichardi
ENSMAMG00000006231	-	95	87.939	ENSNLEG00000006062	UPF1	99	87.369	Nomascus_leucogenys
ENSMAMG00000006231	-	83	88.672	ENSMEUG00000014146	-	83	87.500	Notamacropus_eugenii
ENSMAMG00000006231	-	95	87.440	ENSOPRG00000014018	UPF1	99	86.865	Ochotona_princeps
ENSMAMG00000006231	-	100	92.356	ENSODEG00000012426	UPF1	100	91.817	Octodon_degus
ENSMAMG00000006231	-	100	98.457	ENSONIG00000012729	-	100	98.457	Oreochromis_niloticus
ENSMAMG00000006231	-	100	92.280	ENSONIG00000010452	upf1	100	92.549	Oreochromis_niloticus
ENSMAMG00000006231	-	100	91.593	ENSOANG00000004568	UPF1	100	90.885	Ornithorhynchus_anatinus
ENSMAMG00000006231	-	100	97.731	ENSORLG00000008453	upf1	100	97.731	Oryzias_latipes
ENSMAMG00000006231	-	100	97.643	ENSORLG00020014758	upf1	100	97.643	Oryzias_latipes_hni
ENSMAMG00000006231	-	100	97.643	ENSORLG00015010165	upf1	100	97.643	Oryzias_latipes_hsok
ENSMAMG00000006231	-	100	98.185	ENSOMEG00000003665	upf1	100	98.185	Oryzias_melastigma
ENSMAMG00000006231	-	100	92.157	ENSOGAG00000012866	UPF1	100	91.711	Otolemur_garnettii
ENSMAMG00000006231	-	96	90.717	ENSOARG00000010739	UPF1	100	90.165	Ovis_aries
ENSMAMG00000006231	-	95	93.637	ENSPPAG00000043884	UPF1	96	93.067	Pan_paniscus
ENSMAMG00000006231	-	100	91.431	ENSPPRG00000023470	UPF1	100	90.989	Panthera_pardus
ENSMAMG00000006231	-	95	92.440	ENSPTIG00000010159	UPF1	99	91.866	Panthera_tigris_altaica
ENSMAMG00000006231	-	100	91.993	ENSPTRG00000010721	UPF1	100	91.548	Pan_troglodytes
ENSMAMG00000006231	-	100	91.993	ENSPANG00000008847	UPF1	100	91.548	Papio_anubis
ENSMAMG00000006231	-	92	94.291	ENSPKIG00000006069	upf1	95	96.162	Paramormyrops_kingsleyae
ENSMAMG00000006231	-	70	93.220	ENSPSIG00000009491	UPF1	100	92.438	Pelodiscus_sinensis
ENSMAMG00000006231	-	100	91.501	ENSPMGG00000017327	upf1	100	91.501	Periophthalmus_magnuspinnatus
ENSMAMG00000006231	-	100	91.304	ENSPEMG00000001085	Upf1	100	90.861	Peromyscus_maniculatus_bairdii
ENSMAMG00000006231	-	100	87.748	ENSPMAG00000001206	upf1	100	87.556	Petromyzon_marinus
ENSMAMG00000006231	-	100	92.417	ENSPCIG00000006156	UPF1	100	91.971	Phascolarctos_cinereus
ENSMAMG00000006231	-	100	97.641	ENSPLAG00000016232	-	100	97.641	Poecilia_latipinna
ENSMAMG00000006231	-	100	91.293	ENSPLAG00000018155	-	100	90.917	Poecilia_latipinna
ENSMAMG00000006231	-	100	91.863	ENSPMEG00000011443	-	100	91.561	Poecilia_mexicana
ENSMAMG00000006231	-	100	97.731	ENSPMEG00000016319	-	100	97.731	Poecilia_mexicana
ENSMAMG00000006231	-	100	97.368	ENSPREG00000011247	-	100	97.368	Poecilia_reticulata
ENSMAMG00000006231	-	100	91.577	ENSPREG00000009940	upf1	100	91.203	Poecilia_reticulata
ENSMAMG00000006231	-	100	86.484	ENSPPYG00000009752	UPF1	100	86.131	Pongo_abelii
ENSMAMG00000006231	-	75	98.316	ENSPCAG00000012962	UPF1	76	98.316	Procavia_capensis
ENSMAMG00000006231	-	100	91.918	ENSPCOG00000023813	UPF1	100	91.474	Propithecus_coquereli
ENSMAMG00000006231	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMAMG00000006231	-	100	98.548	ENSPNYG00000016731	-	100	98.548	Pundamilia_nyererei
ENSMAMG00000006231	-	100	92.101	ENSPNYG00000003694	upf1	100	92.370	Pundamilia_nyererei
ENSMAMG00000006231	-	100	94.198	ENSPNAG00000025614	upf1	100	94.379	Pygocentrus_nattereri
ENSMAMG00000006231	-	100	91.943	ENSRNOG00000020134	Upf1	100	91.495	Rattus_norvegicus
ENSMAMG00000006231	-	95	91.263	ENSRBIG00000013894	UPF1	98	93.668	Rhinopithecus_bieti
ENSMAMG00000006231	-	95	93.637	ENSRROG00000040935	UPF1	98	93.668	Rhinopithecus_roxellana
ENSMAMG00000006231	-	74	57.038	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSMAMG00000006231	-	94	93.893	ENSSBOG00000023632	UPF1	96	93.321	Saimiri_boliviensis_boliviensis
ENSMAMG00000006231	-	95	93.649	ENSSHAG00000010499	UPF1	100	93.081	Sarcophilus_harrisii
ENSMAMG00000006231	-	100	95.463	ENSSFOG00015021095	upf1	100	95.463	Scleropages_formosus
ENSMAMG00000006231	-	100	91.137	ENSSMAG00000005055	upf1	100	91.495	Scophthalmus_maximus
ENSMAMG00000006231	-	100	98.820	ENSSMAG00000021018	-	100	98.820	Scophthalmus_maximus
ENSMAMG00000006231	-	100	99.365	ENSSDUG00000009629	-	100	99.365	Seriola_dumerili
ENSMAMG00000006231	-	100	91.868	ENSSDUG00000013320	upf1	100	92.493	Seriola_dumerili
ENSMAMG00000006231	-	100	99.365	ENSSLDG00000006878	-	100	99.365	Seriola_lalandi_dorsalis
ENSMAMG00000006231	-	100	92.696	ENSSLDG00000020868	upf1	100	92.786	Seriola_lalandi_dorsalis
ENSMAMG00000006231	-	100	92.633	ENSSPUG00000010538	UPF1	100	92.183	Sphenodon_punctatus
ENSMAMG00000006231	-	100	98.730	ENSSPAG00000011521	-	100	98.730	Stegastes_partitus
ENSMAMG00000006231	-	100	90.950	ENSSPAG00000000003	upf1	100	90.744	Stegastes_partitus
ENSMAMG00000006231	-	100	92.404	ENSSSCG00000039301	UPF1	99	93.876	Sus_scrofa
ENSMAMG00000006231	-	82	86.596	ENSTGUG00000001057	UPF1	100	90.828	Taeniopygia_guttata
ENSMAMG00000006231	-	100	97.096	ENSTRUG00000005131	-	100	97.096	Takifugu_rubripes
ENSMAMG00000006231	-	100	92.656	ENSTRUG00000000150	upf1	100	92.475	Takifugu_rubripes
ENSMAMG00000006231	-	100	88.740	ENSTTRG00000011544	UPF1	100	88.204	Tursiops_truncatus
ENSMAMG00000006231	-	100	92.157	ENSUAMG00000007093	UPF1	100	91.711	Ursus_americanus
ENSMAMG00000006231	-	95	94.450	ENSUMAG00000006652	UPF1	99	94.312	Ursus_maritimus
ENSMAMG00000006231	-	100	92.246	ENSVVUG00000007797	UPF1	100	91.800	Vulpes_vulpes
ENSMAMG00000006231	-	100	79.471	ENSXETG00000013602	upf1	100	79.471	Xenopus_tropicalis
ENSMAMG00000006231	-	94	97.580	ENSXCOG00000005764	-	100	97.580	Xiphophorus_couchianus
ENSMAMG00000006231	-	97	91.455	ENSXCOG00000015275	-	96	91.455	Xiphophorus_couchianus
ENSMAMG00000006231	-	100	91.652	ENSXMAG00000001703	-	100	91.652	Xiphophorus_maculatus
ENSMAMG00000006231	-	100	97.550	ENSXMAG00000002540	-	100	97.550	Xiphophorus_maculatus