EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000006244 (Gene tree)
Gene ID: 113141444
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 6849 bases
Position: chrOOHQ01000092.1:20929376-20936224
Accession: 113141444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009249	zf-CCCH	PF00642.24	3.7e-20	1	2
ENSMAMP00000009249	zf-CCCH	PF00642.24	3.7e-20	2	2
ENSMAMP00000009273	zf-CCCH	PF00642.24	2.3e-15	1	2
ENSMAMP00000009273	zf-CCCH	PF00642.24	2.3e-15	2	2
ENSMAMP00000009249	zf-CCHC	PF00098.23	4.7e-06	1	1
ENSMAMP00000009273	zf-CCHC	PF00098.23	4.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000009494	-	3710	-	ENSMAMP00000009249	266 (aa)	XP_026181645	UPI000E464F33
ENSMAMT00000009520	-	804	-	ENSMAMP00000009273	267 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000006244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006244's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006244	cpsf4	100	84.074	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSMAMG00000006244	cpsf4	67	85.393	ENSAPOG00000004921	cpsf4	100	85.393	Acanthochromis_polyacanthus
ENSMAMG00000006244	cpsf4	100	83.516	ENSAMEG00000006252	CPSF4	100	84.074	Ailuropoda_melanoleuca
ENSMAMG00000006244	cpsf4	100	86.466	ENSACIG00000009248	cpsf4	100	87.594	Amphilophus_citrinellus
ENSMAMG00000006244	cpsf4	100	93.609	ENSAOCG00000019616	cpsf4	100	93.609	Amphiprion_ocellaris
ENSMAMG00000006244	cpsf4	100	93.609	ENSAPEG00000011679	cpsf4	100	93.609	Amphiprion_percula
ENSMAMG00000006244	cpsf4	100	94.757	ENSATEG00000007010	cpsf4	100	94.757	Anabas_testudineus
ENSMAMG00000006244	cpsf4	100	80.220	ENSACAG00000012941	CPSF4	89	82.222	Anolis_carolinensis
ENSMAMG00000006244	cpsf4	100	84.074	ENSANAG00000021360	CPSF4	100	84.074	Aotus_nancymaae
ENSMAMG00000006244	cpsf4	100	93.233	ENSACLG00000010374	cpsf4	100	93.233	Astatotilapia_calliptera
ENSMAMG00000006244	cpsf4	100	84.815	ENSAMXG00000031647	cpsf4	100	84.815	Astyanax_mexicanus
ENSMAMG00000006244	cpsf4	100	80.524	ENSBTAG00000002090	CPSF4	100	80.075	Bos_taurus
ENSMAMG00000006244	cpsf4	100	84.074	ENSCJAG00000015826	CPSF4	100	84.074	Callithrix_jacchus
ENSMAMG00000006244	cpsf4	100	84.074	ENSCAFG00000015036	CPSF4	99	87.425	Canis_familiaris
ENSMAMG00000006244	cpsf4	100	79.630	ENSCAFG00020014462	CPSF4	100	79.630	Canis_lupus_dingo
ENSMAMG00000006244	cpsf4	100	83.150	ENSCHIG00000014313	CPSF4	100	83.704	Capra_hircus
ENSMAMG00000006244	cpsf4	89	74.790	ENSTSYG00000008195	-	99	74.899	Carlito_syrichta
ENSMAMG00000006244	cpsf4	100	73.034	ENSTSYG00000014604	-	100	73.034	Carlito_syrichta
ENSMAMG00000006244	cpsf4	100	80.451	ENSTSYG00000005712	-	100	80.451	Carlito_syrichta
ENSMAMG00000006244	cpsf4	82	82.589	ENSCAPG00000013881	CPSF4	88	82.511	Cavia_aperea
ENSMAMG00000006244	cpsf4	100	80.827	ENSCPOG00000001783	CPSF4	100	80.827	Cavia_porcellus
ENSMAMG00000006244	cpsf4	100	84.074	ENSCCAG00000028291	CPSF4	100	84.074	Cebus_capucinus
ENSMAMG00000006244	cpsf4	100	84.074	ENSCATG00000038440	CPSF4	100	84.074	Cercocebus_atys
ENSMAMG00000006244	cpsf4	100	84.444	ENSCLAG00000007050	CPSF4	100	84.444	Chinchilla_lanigera
ENSMAMG00000006244	cpsf4	100	84.074	ENSCSAG00000017795	CPSF4	100	84.074	Chlorocebus_sabaeus
ENSMAMG00000006244	cpsf4	80	81.364	ENSCPBG00000020869	CPSF4	100	82.949	Chrysemys_picta_bellii
ENSMAMG00000006244	cpsf4	62	78.788	ENSCPBG00000010269	-	99	78.788	Chrysemys_picta_bellii
ENSMAMG00000006244	cpsf4	97	55.939	ENSCING00000021080	-	97	56.031	Ciona_intestinalis
ENSMAMG00000006244	cpsf4	96	53.737	ENSCSAVG00000011469	-	97	53.737	Ciona_savignyi
ENSMAMG00000006244	cpsf4	100	84.074	ENSCANG00000019384	CPSF4	100	84.074	Colobus_angolensis_palliatus
ENSMAMG00000006244	cpsf4	100	80.827	ENSCGRG00001024184	Cpsf4	100	80.827	Cricetulus_griseus_chok1gshd
ENSMAMG00000006244	cpsf4	100	83.516	ENSCGRG00000013892	Cpsf4	100	84.074	Cricetulus_griseus_crigri
ENSMAMG00000006244	cpsf4	100	90.226	ENSCSEG00000019055	cpsf4	100	90.226	Cynoglossus_semilaevis
ENSMAMG00000006244	cpsf4	100	90.226	ENSCVAG00000016528	cpsf4	100	90.226	Cyprinodon_variegatus
ENSMAMG00000006244	cpsf4	100	84.249	ENSDARG00000020217	cpsf4	100	84.615	Danio_rerio
ENSMAMG00000006244	cpsf4	100	83.516	ENSDNOG00000006344	CPSF4	100	84.074	Dasypus_novemcinctus
ENSMAMG00000006244	cpsf4	80	82.353	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSMAMG00000006244	cpsf4	100	54.515	FBgn0015621	Clp	99	53.846	Drosophila_melanogaster
ENSMAMG00000006244	cpsf4	70	95.455	ENSETEG00000002608	CPSF4	70	95.455	Echinops_telfairi
ENSMAMG00000006244	cpsf4	99	65.530	ENSEBUG00000012552	cpsf4	98	65.530	Eptatretus_burgeri
ENSMAMG00000006244	cpsf4	100	80.827	ENSEASG00005002487	CPSF4	100	80.827	Equus_asinus_asinus
ENSMAMG00000006244	cpsf4	100	83.516	ENSECAG00000007525	CPSF4	100	84.074	Equus_caballus
ENSMAMG00000006244	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSMAMG00000006244	cpsf4	100	84.926	ENSELUG00000011481	cpsf4	100	85.294	Esox_lucius
ENSMAMG00000006244	cpsf4	100	83.516	ENSFCAG00000015070	CPSF4	100	84.074	Felis_catus
ENSMAMG00000006244	cpsf4	100	80.524	ENSFALG00000013799	CPSF4	100	80.524	Ficedula_albicollis
ENSMAMG00000006244	cpsf4	62	55.814	ENSFALG00000012906	-	100	55.814	Ficedula_albicollis
ENSMAMG00000006244	cpsf4	90	82.186	ENSFDAG00000014092	CPSF4	100	82.787	Fukomys_damarensis
ENSMAMG00000006244	cpsf4	100	91.353	ENSFHEG00000010880	cpsf4	100	91.353	Fundulus_heteroclitus
ENSMAMG00000006244	cpsf4	100	81.618	ENSGMOG00000002330	cpsf4	100	81.618	Gadus_morhua
ENSMAMG00000006244	cpsf4	99	36.316	ENSGALG00000004441	-	98	36.316	Gallus_gallus
ENSMAMG00000006244	cpsf4	100	80.899	ENSGALG00000004714	CPSF4	100	80.899	Gallus_gallus
ENSMAMG00000006244	cpsf4	100	89.098	ENSGAFG00000010580	cpsf4	100	89.098	Gambusia_affinis
ENSMAMG00000006244	cpsf4	100	85.821	ENSGACG00000007792	cpsf4	100	85.821	Gasterosteus_aculeatus
ENSMAMG00000006244	cpsf4	68	75.275	ENSGAGG00000020579	-	100	75.275	Gopherus_agassizii
ENSMAMG00000006244	cpsf4	100	82.418	ENSGAGG00000021835	CPSF4	100	83.704	Gopherus_agassizii
ENSMAMG00000006244	cpsf4	100	84.074	ENSGGOG00000015131	CPSF4	100	84.074	Gorilla_gorilla
ENSMAMG00000006244	cpsf4	100	93.233	ENSHBUG00000013699	cpsf4	100	93.233	Haplochromis_burtoni
ENSMAMG00000006244	cpsf4	100	82.418	ENSHGLG00000017150	CPSF4	100	83.395	Heterocephalus_glaber_female
ENSMAMG00000006244	cpsf4	67	64.407	ENSHGLG00100017302	-	99	57.692	Heterocephalus_glaber_male
ENSMAMG00000006244	cpsf4	87	79.412	ENSHGLG00100009215	-	100	80.508	Heterocephalus_glaber_male
ENSMAMG00000006244	cpsf4	100	87.970	ENSHCOG00000004397	cpsf4	100	87.970	Hippocampus_comes
ENSMAMG00000006244	cpsf4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.240	Ictalurus_punctatus
ENSMAMG00000006244	cpsf4	100	83.516	ENSSTOG00000001688	CPSF4	100	84.074	Ictidomys_tridecemlineatus
ENSMAMG00000006244	cpsf4	100	84.444	ENSJJAG00000019426	Cpsf4	100	84.444	Jaculus_jaculus
ENSMAMG00000006244	cpsf4	100	88.722	ENSKMAG00000015642	cpsf4	100	88.722	Kryptolebias_marmoratus
ENSMAMG00000006244	cpsf4	100	84.871	ENSLACG00000010938	CPSF4	100	84.871	Latimeria_chalumnae
ENSMAMG00000006244	cpsf4	100	59.701	ENSLACG00000018470	-	100	59.701	Latimeria_chalumnae
ENSMAMG00000006244	cpsf4	100	83.271	ENSLOCG00000004814	cpsf4	100	83.643	Lepisosteus_oculatus
ENSMAMG00000006244	cpsf4	100	83.883	ENSLAFG00000000159	CPSF4	100	84.444	Loxodonta_africana
ENSMAMG00000006244	cpsf4	100	84.074	ENSMFAG00000001462	CPSF4	100	84.074	Macaca_fascicularis
ENSMAMG00000006244	cpsf4	100	84.074	ENSMMUG00000019191	CPSF4	100	84.074	Macaca_mulatta
ENSMAMG00000006244	cpsf4	100	84.074	ENSMNEG00000032306	CPSF4	100	84.074	Macaca_nemestrina
ENSMAMG00000006244	cpsf4	100	84.074	ENSMLEG00000034721	CPSF4	100	84.074	Mandrillus_leucophaeus
ENSMAMG00000006244	cpsf4	100	93.233	ENSMZEG00005007515	cpsf4	100	93.233	Maylandia_zebra
ENSMAMG00000006244	cpsf4	87	78.970	ENSMGAG00000004235	CPSF4	100	78.970	Meleagris_gallopavo
ENSMAMG00000006244	cpsf4	100	83.516	ENSMAUG00000021253	Cpsf4	100	84.074	Mesocricetus_auratus
ENSMAMG00000006244	cpsf4	100	84.074	ENSMICG00000017429	CPSF4	100	84.074	Microcebus_murinus
ENSMAMG00000006244	cpsf4	100	83.516	ENSMOCG00000014901	Cpsf4	100	84.074	Microtus_ochrogaster
ENSMAMG00000006244	cpsf4	100	93.233	ENSMMOG00000001813	cpsf4	100	93.233	Mola_mola
ENSMAMG00000006244	cpsf4	100	83.883	ENSMODG00000001367	CPSF4	100	84.444	Monodelphis_domestica
ENSMAMG00000006244	cpsf4	100	92.857	ENSMALG00000012611	cpsf4	100	92.857	Monopterus_albus
ENSMAMG00000006244	cpsf4	100	83.516	MGP_CAROLIEiJ_G0028012	Cpsf4	100	84.074	Mus_caroli
ENSMAMG00000006244	cpsf4	100	83.516	ENSMUSG00000029625	Cpsf4	100	84.074	Mus_musculus
ENSMAMG00000006244	cpsf4	100	83.516	MGP_PahariEiJ_G0024581	Cpsf4	100	84.074	Mus_pahari
ENSMAMG00000006244	cpsf4	100	84.074	MGP_SPRETEiJ_G0029013	Cpsf4	100	84.074	Mus_spretus
ENSMAMG00000006244	cpsf4	100	83.516	ENSMPUG00000016508	CPSF4	100	84.074	Mustela_putorius_furo
ENSMAMG00000006244	cpsf4	87	79.399	ENSMLUG00000010980	CPSF4	100	79.399	Myotis_lucifugus
ENSMAMG00000006244	cpsf4	100	83.883	ENSNGAG00000001567	Cpsf4	100	84.444	Nannospalax_galili
ENSMAMG00000006244	cpsf4	91	93.388	ENSNBRG00000003943	cpsf4	98	93.388	Neolamprologus_brichardi
ENSMAMG00000006244	cpsf4	100	81.955	ENSNLEG00000011074	CPSF4	100	81.955	Nomascus_leucogenys
ENSMAMG00000006244	cpsf4	100	83.883	ENSMEUG00000006955	CPSF4	100	84.444	Notamacropus_eugenii
ENSMAMG00000006244	cpsf4	100	84.074	ENSOPRG00000013663	CPSF4	100	84.074	Ochotona_princeps
ENSMAMG00000006244	cpsf4	100	83.516	ENSODEG00000011181	-	100	84.074	Octodon_degus
ENSMAMG00000006244	cpsf4	100	65.455	ENSODEG00000009779	-	100	65.455	Octodon_degus
ENSMAMG00000006244	cpsf4	98	68.321	ENSODEG00000018283	-	91	68.321	Octodon_degus
ENSMAMG00000006244	cpsf4	100	93.609	ENSONIG00000008495	cpsf4	100	93.609	Oreochromis_niloticus
ENSMAMG00000006244	cpsf4	100	53.237	ENSOANG00000009568	-	100	53.237	Ornithorhynchus_anatinus
ENSMAMG00000006244	cpsf4	87	83.264	ENSOANG00000007729	CPSF4	100	83.264	Ornithorhynchus_anatinus
ENSMAMG00000006244	cpsf4	100	84.074	ENSOCUG00000002437	CPSF4	70	84.074	Oryctolagus_cuniculus
ENSMAMG00000006244	cpsf4	100	90.977	ENSORLG00000022798	cpsf4	100	90.977	Oryzias_latipes
ENSMAMG00000006244	cpsf4	100	90.977	ENSORLG00020008548	cpsf4	100	90.977	Oryzias_latipes_hni
ENSMAMG00000006244	cpsf4	100	90.602	ENSORLG00015019575	cpsf4	100	90.602	Oryzias_latipes_hsok
ENSMAMG00000006244	cpsf4	100	89.850	ENSOMEG00000005176	cpsf4	100	89.850	Oryzias_melastigma
ENSMAMG00000006244	cpsf4	100	84.074	ENSOGAG00000010884	CPSF4	100	84.074	Otolemur_garnettii
ENSMAMG00000006244	cpsf4	100	74.007	ENSOARG00000018668	CPSF4	100	74.007	Ovis_aries
ENSMAMG00000006244	cpsf4	100	84.074	ENSPPAG00000043355	CPSF4	100	84.074	Pan_paniscus
ENSMAMG00000006244	cpsf4	100	83.516	ENSPPRG00000003134	CPSF4	100	84.074	Panthera_pardus
ENSMAMG00000006244	cpsf4	90	80.488	ENSPTIG00000005604	CPSF4	90	83.539	Panthera_tigris_altaica
ENSMAMG00000006244	cpsf4	100	84.074	ENSPTRG00000019453	CPSF4	100	84.074	Pan_troglodytes
ENSMAMG00000006244	cpsf4	100	84.074	ENSPANG00000023123	CPSF4	100	84.074	Papio_anubis
ENSMAMG00000006244	cpsf4	100	83.212	ENSPKIG00000014278	cpsf4	100	83.212	Paramormyrops_kingsleyae
ENSMAMG00000006244	cpsf4	80	80.909	ENSPSIG00000011229	CPSF4	100	82.488	Pelodiscus_sinensis
ENSMAMG00000006244	cpsf4	81	59.535	ENSPSIG00000018198	-	100	59.535	Pelodiscus_sinensis
ENSMAMG00000006244	cpsf4	100	79.323	ENSPMGG00000017735	cpsf4	100	79.323	Periophthalmus_magnuspinnatus
ENSMAMG00000006244	cpsf4	100	83.516	ENSPEMG00000004508	Cpsf4	100	84.074	Peromyscus_maniculatus_bairdii
ENSMAMG00000006244	cpsf4	100	83.883	ENSPCIG00000024776	CPSF4	100	84.444	Phascolarctos_cinereus
ENSMAMG00000006244	cpsf4	100	89.098	ENSPFOG00000014912	cpsf4	100	89.098	Poecilia_formosa
ENSMAMG00000006244	cpsf4	100	81.955	ENSPLAG00000009599	cpsf4	100	81.955	Poecilia_latipinna
ENSMAMG00000006244	cpsf4	100	89.098	ENSPMEG00000009790	cpsf4	100	89.098	Poecilia_mexicana
ENSMAMG00000006244	cpsf4	100	88.722	ENSPREG00000018166	cpsf4	100	88.722	Poecilia_reticulata
ENSMAMG00000006244	cpsf4	87	82.553	ENSPPYG00000017378	CPSF4	100	82.553	Pongo_abelii
ENSMAMG00000006244	cpsf4	100	83.883	ENSPCAG00000001892	CPSF4	100	84.444	Procavia_capensis
ENSMAMG00000006244	cpsf4	100	83.516	ENSPCOG00000012771	CPSF4	100	84.074	Propithecus_coquereli
ENSMAMG00000006244	cpsf4	100	78.388	ENSPVAG00000007531	CPSF4	100	78.889	Pteropus_vampyrus
ENSMAMG00000006244	cpsf4	100	93.233	ENSPNYG00000018559	cpsf4	100	93.233	Pundamilia_nyererei
ENSMAMG00000006244	cpsf4	100	85.926	ENSPNAG00000003736	cpsf4	100	85.926	Pygocentrus_nattereri
ENSMAMG00000006244	cpsf4	100	80.899	ENSRNOG00000000985	Cpsf4	100	80.899	Rattus_norvegicus
ENSMAMG00000006244	cpsf4	87	82.979	ENSRBIG00000033886	CPSF4	100	82.979	Rhinopithecus_bieti
ENSMAMG00000006244	cpsf4	100	80.827	ENSRROG00000040431	CPSF4	100	80.827	Rhinopithecus_roxellana
ENSMAMG00000006244	cpsf4	100	84.074	ENSSBOG00000020493	CPSF4	100	84.074	Saimiri_boliviensis_boliviensis
ENSMAMG00000006244	cpsf4	100	83.883	ENSSHAG00000011533	CPSF4	100	84.444	Sarcophilus_harrisii
ENSMAMG00000006244	cpsf4	100	81.884	ENSSFOG00015007883	cpsf4	100	82.246	Scleropages_formosus
ENSMAMG00000006244	cpsf4	100	83.459	ENSSMAG00000006374	cpsf4	100	83.459	Scophthalmus_maximus
ENSMAMG00000006244	cpsf4	100	94.737	ENSSDUG00000018887	cpsf4	100	94.737	Seriola_dumerili
ENSMAMG00000006244	cpsf4	100	94.737	ENSSLDG00000019078	cpsf4	100	94.737	Seriola_lalandi_dorsalis
ENSMAMG00000006244	cpsf4	87	82.979	ENSSARG00000012416	CPSF4	100	82.979	Sorex_araneus
ENSMAMG00000006244	cpsf4	96	58.039	ENSSPUG00000014803	-	97	58.039	Sphenodon_punctatus
ENSMAMG00000006244	cpsf4	100	82.418	ENSSPUG00000003549	CPSF4	100	82.418	Sphenodon_punctatus
ENSMAMG00000006244	cpsf4	100	86.466	ENSSPAG00000006174	cpsf4	100	86.466	Stegastes_partitus
ENSMAMG00000006244	cpsf4	100	80.827	ENSSSCG00000026896	CPSF4	100	80.827	Sus_scrofa
ENSMAMG00000006244	cpsf4	100	79.554	ENSTGUG00000007552	CPSF4	100	79.554	Taeniopygia_guttata
ENSMAMG00000006244	cpsf4	100	88.346	ENSTRUG00000024220	cpsf4	100	88.346	Takifugu_rubripes
ENSMAMG00000006244	cpsf4	100	89.474	ENSTNIG00000006265	cpsf4	100	89.474	Tetraodon_nigroviridis
ENSMAMG00000006244	cpsf4	87	74.468	ENSTBEG00000011406	CPSF4	100	74.468	Tupaia_belangeri
ENSMAMG00000006244	cpsf4	100	73.234	ENSTTRG00000003007	CPSF4	100	73.234	Tursiops_truncatus
ENSMAMG00000006244	cpsf4	92	79.592	ENSUAMG00000008051	CPSF4	85	79.098	Ursus_americanus
ENSMAMG00000006244	cpsf4	100	80.899	ENSUMAG00000009474	CPSF4	100	80.899	Ursus_maritimus
ENSMAMG00000006244	cpsf4	100	80.827	ENSVVUG00000008824	CPSF4	100	80.827	Vulpes_vulpes
ENSMAMG00000006244	cpsf4	99	60.370	ENSXETG00000004641	cpsf4l	99	60.370	Xenopus_tropicalis
ENSMAMG00000006244	cpsf4	100	79.570	ENSXETG00000009892	cpsf4	100	80.357	Xenopus_tropicalis
ENSMAMG00000006244	cpsf4	100	88.722	ENSXCOG00000016040	cpsf4	100	88.722	Xiphophorus_couchianus
ENSMAMG00000006244	cpsf4	100	89.098	ENSXMAG00000024670	cpsf4	100	89.098	Xiphophorus_maculatus