EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000006460 (Gene tree)
Gene ID: 113138417
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 4485 bases
Position: chrOOHQ01000039.1:7808188-7812672
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009627	PRP21_like_P	PF12230.8	2.5e-52	1	1
ENSMAMP00000009605	PRP21_like_P	PF12230.8	2.6e-52	1	1
ENSMAMP00000009627	Surp	PF01805.20	6.7e-46	1	2
ENSMAMP00000009627	Surp	PF01805.20	6.7e-46	2	2
ENSMAMP00000009605	Surp	PF01805.20	6.8e-46	1	2
ENSMAMP00000009605	Surp	PF01805.20	6.8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000009854	-	2449	-	ENSMAMP00000009605	805 (aa)	-	-
ENSMAMT00000009876	-	2400	-	ENSMAMP00000009627	799 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000006460's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006460's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006460	sf3a1	97	85.770	ENSG00000099995	SF3A1	97	85.640	Homo_sapiens
ENSMAMG00000006460	sf3a1	96	96.887	ENSAPOG00000020465	sf3a1	98	96.887	Acanthochromis_polyacanthus
ENSMAMG00000006460	sf3a1	97	85.899	ENSAMEG00000007737	SF3A1	97	85.770	Ailuropoda_melanoleuca
ENSMAMG00000006460	sf3a1	96	95.331	ENSACIG00000020672	sf3a1	98	95.331	Amphilophus_citrinellus
ENSMAMG00000006460	sf3a1	98	96.031	ENSAOCG00000003060	sf3a1	99	96.031	Amphiprion_ocellaris
ENSMAMG00000006460	sf3a1	98	96.159	ENSAPEG00000010735	sf3a1	99	96.159	Amphiprion_percula
ENSMAMG00000006460	sf3a1	96	95.833	ENSATEG00000021201	sf3a1	97	95.833	Anabas_testudineus
ENSMAMG00000006460	sf3a1	95	84.980	ENSAPLG00000009057	SF3A1	99	84.794	Anas_platyrhynchos
ENSMAMG00000006460	sf3a1	97	82.785	ENSACAG00000009415	SF3A1	98	82.763	Anolis_carolinensis
ENSMAMG00000006460	sf3a1	97	85.899	ENSANAG00000032045	SF3A1	97	85.770	Aotus_nancymaae
ENSMAMG00000006460	sf3a1	96	93.515	ENSACLG00000012622	sf3a1	99	93.470	Astatotilapia_calliptera
ENSMAMG00000006460	sf3a1	96	89.535	ENSAMXG00000005382	sf3a1	99	88.903	Astyanax_mexicanus
ENSMAMG00000006460	sf3a1	97	85.899	ENSBTAG00000003390	SF3A1	97	85.770	Bos_taurus
ENSMAMG00000006460	sf3a1	78	45.857	WBGene00004188	prp-21	58	51.579	Caenorhabditis_elegans
ENSMAMG00000006460	sf3a1	97	85.770	ENSCJAG00000010370	SF3A1	97	85.640	Callithrix_jacchus
ENSMAMG00000006460	sf3a1	97	85.899	ENSCAFG00000012559	SF3A1	97	85.770	Canis_familiaris
ENSMAMG00000006460	sf3a1	97	85.899	ENSCAFG00020000838	SF3A1	97	85.770	Canis_lupus_dingo
ENSMAMG00000006460	sf3a1	97	86.028	ENSCHIG00000018642	SF3A1	97	85.899	Capra_hircus
ENSMAMG00000006460	sf3a1	97	85.899	ENSTSYG00000004739	SF3A1	97	85.770	Carlito_syrichta
ENSMAMG00000006460	sf3a1	93	69.652	ENSCAPG00000015414	SF3A1	98	69.519	Cavia_aperea
ENSMAMG00000006460	sf3a1	97	85.899	ENSCPOG00000014589	SF3A1	97	85.770	Cavia_porcellus
ENSMAMG00000006460	sf3a1	97	85.899	ENSCCAG00000032006	SF3A1	97	85.770	Cebus_capucinus
ENSMAMG00000006460	sf3a1	97	85.770	ENSCATG00000029241	SF3A1	97	85.640	Cercocebus_atys
ENSMAMG00000006460	sf3a1	96	86.328	ENSCLAG00000006508	SF3A1	97	85.640	Chinchilla_lanigera
ENSMAMG00000006460	sf3a1	97	85.770	ENSCSAG00000009470	SF3A1	97	85.640	Chlorocebus_sabaeus
ENSMAMG00000006460	sf3a1	60	90.943	ENSCHOG00000005201	SF3A1	61	90.943	Choloepus_hoffmanni
ENSMAMG00000006460	sf3a1	97	83.571	ENSCPBG00000007595	SF3A1	97	84.088	Chrysemys_picta_bellii
ENSMAMG00000006460	sf3a1	96	52.357	ENSCING00000008526	-	98	51.786	Ciona_intestinalis
ENSMAMG00000006460	sf3a1	90	63.158	ENSCSAVG00000005608	-	93	66.319	Ciona_savignyi
ENSMAMG00000006460	sf3a1	97	85.770	ENSCANG00000033564	SF3A1	97	85.640	Colobus_angolensis_palliatus
ENSMAMG00000006460	sf3a1	95	86.842	ENSCGRG00001008933	Sf3a1	97	85.511	Cricetulus_griseus_chok1gshd
ENSMAMG00000006460	sf3a1	95	86.842	ENSCGRG00000006127	Sf3a1	97	85.511	Cricetulus_griseus_crigri
ENSMAMG00000006460	sf3a1	96	91.332	ENSCSEG00000010792	sf3a1	98	90.686	Cynoglossus_semilaevis
ENSMAMG00000006460	sf3a1	96	92.208	ENSCVAG00000004560	sf3a1	98	92.208	Cyprinodon_variegatus
ENSMAMG00000006460	sf3a1	96	88.021	ENSDARG00000041887	sf3a1	100	89.773	Danio_rerio
ENSMAMG00000006460	sf3a1	97	86.047	ENSDNOG00000010629	SF3A1	97	86.047	Dasypus_novemcinctus
ENSMAMG00000006460	sf3a1	97	85.899	ENSDORG00000005613	Sf3a1	97	85.770	Dipodomys_ordii
ENSMAMG00000006460	sf3a1	83	61.770	FBgn0266917	Sf3a1	50	69.858	Drosophila_melanogaster
ENSMAMG00000006460	sf3a1	84	85.650	ENSETEG00000017194	SF3A1	95	85.949	Echinops_telfairi
ENSMAMG00000006460	sf3a1	97	67.279	ENSEBUG00000001285	sf3a1	96	69.165	Eptatretus_burgeri
ENSMAMG00000006460	sf3a1	96	86.458	ENSEASG00005010254	SF3A1	97	85.770	Equus_asinus_asinus
ENSMAMG00000006460	sf3a1	96	86.458	ENSECAG00000023962	SF3A1	97	85.770	Equus_caballus
ENSMAMG00000006460	sf3a1	73	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSMAMG00000006460	sf3a1	96	87.435	ENSELUG00000022578	sf3a1	98	87.824	Esox_lucius
ENSMAMG00000006460	sf3a1	97	85.770	ENSFCAG00000011932	SF3A1	97	85.640	Felis_catus
ENSMAMG00000006460	sf3a1	95	84.433	ENSFALG00000006944	SF3A1	96	85.117	Ficedula_albicollis
ENSMAMG00000006460	sf3a1	97	85.770	ENSFDAG00000009560	SF3A1	97	85.640	Fukomys_damarensis
ENSMAMG00000006460	sf3a1	97	93.135	ENSFHEG00000010866	sf3a1	98	93.135	Fundulus_heteroclitus
ENSMAMG00000006460	sf3a1	96	87.922	ENSGMOG00000016024	sf3a1	98	87.403	Gadus_morhua
ENSMAMG00000006460	sf3a1	95	85.092	ENSGALG00000007937	SF3A1	96	85.640	Gallus_gallus
ENSMAMG00000006460	sf3a1	97	93.264	ENSGAFG00000009111	sf3a1	98	93.264	Gambusia_affinis
ENSMAMG00000006460	sf3a1	97	89.859	ENSGACG00000011893	sf3a1	98	89.089	Gasterosteus_aculeatus
ENSMAMG00000006460	sf3a1	98	78.392	ENSGAGG00000000762	SF3A1	97	83.649	Gopherus_agassizii
ENSMAMG00000006460	sf3a1	97	85.770	ENSGGOG00000012631	SF3A1	97	85.640	Gorilla_gorilla
ENSMAMG00000006460	sf3a1	96	94.812	ENSHBUG00000015795	sf3a1	99	93.470	Haplochromis_burtoni
ENSMAMG00000006460	sf3a1	97	85.770	ENSHGLG00000007907	SF3A1	97	85.640	Heterocephalus_glaber_female
ENSMAMG00000006460	sf3a1	97	85.770	ENSHGLG00100013799	SF3A1	97	85.640	Heterocephalus_glaber_male
ENSMAMG00000006460	sf3a1	96	90.482	ENSHCOG00000015423	sf3a1	98	90.222	Hippocampus_comes
ENSMAMG00000006460	sf3a1	97	86.744	ENSIPUG00000002470	sf3a1	99	86.744	Ictalurus_punctatus
ENSMAMG00000006460	sf3a1	96	86.441	ENSSTOG00000013892	SF3A1	97	85.640	Ictidomys_tridecemlineatus
ENSMAMG00000006460	sf3a1	96	86.328	ENSJJAG00000022566	Sf3a1	97	85.751	Jaculus_jaculus
ENSMAMG00000006460	sf3a1	97	93.005	ENSKMAG00000002400	sf3a1	98	93.005	Kryptolebias_marmoratus
ENSMAMG00000006460	sf3a1	96	92.348	ENSLBEG00000022974	sf3a1	98	91.958	Labrus_bergylta
ENSMAMG00000006460	sf3a1	98	83.929	ENSLACG00000003565	SF3A1	99	84.478	Latimeria_chalumnae
ENSMAMG00000006460	sf3a1	96	88.228	ENSLOCG00000008251	sf3a1	97	88.098	Lepisosteus_oculatus
ENSMAMG00000006460	sf3a1	96	56.830	ENSLAFG00000026032	-	97	56.410	Loxodonta_africana
ENSMAMG00000006460	sf3a1	97	85.899	ENSLAFG00000000448	SF3A1	97	85.770	Loxodonta_africana
ENSMAMG00000006460	sf3a1	97	85.640	ENSMFAG00000031979	SF3A1	97	85.511	Macaca_fascicularis
ENSMAMG00000006460	sf3a1	97	85.640	ENSMMUG00000005547	SF3A1	97	85.511	Macaca_mulatta
ENSMAMG00000006460	sf3a1	97	85.511	ENSMNEG00000037229	SF3A1	97	85.382	Macaca_nemestrina
ENSMAMG00000006460	sf3a1	97	85.770	ENSMLEG00000041908	SF3A1	97	85.640	Mandrillus_leucophaeus
ENSMAMG00000006460	sf3a1	96	93.515	ENSMZEG00005009633	sf3a1	99	93.470	Maylandia_zebra
ENSMAMG00000006460	sf3a1	95	85.092	ENSMGAG00000001330	SF3A1	100	84.884	Meleagris_gallopavo
ENSMAMG00000006460	sf3a1	92	82.561	ENSMAUG00000020317	Sf3a1	94	82.425	Mesocricetus_auratus
ENSMAMG00000006460	sf3a1	97	85.899	ENSMICG00000010038	SF3A1	97	85.511	Microcebus_murinus
ENSMAMG00000006460	sf3a1	97	85.511	ENSMOCG00000008438	Sf3a1	97	85.382	Microtus_ochrogaster
ENSMAMG00000006460	sf3a1	96	90.532	ENSMMOG00000015588	sf3a1	98	91.310	Mola_mola
ENSMAMG00000006460	sf3a1	96	84.176	ENSMODG00000009270	SF3A1	98	85.290	Monodelphis_domestica
ENSMAMG00000006460	sf3a1	96	95.300	ENSMALG00000000148	sf3a1	99	95.504	Monopterus_albus
ENSMAMG00000006460	sf3a1	96	85.622	MGP_CAROLIEiJ_G0016029	Sf3a1	97	85.363	Mus_caroli
ENSMAMG00000006460	sf3a1	96	85.622	ENSMUSG00000002129	Sf3a1	97	85.363	Mus_musculus
ENSMAMG00000006460	sf3a1	96	85.492	MGP_PahariEiJ_G0016862	Sf3a1	97	85.233	Mus_pahari
ENSMAMG00000006460	sf3a1	96	85.622	MGP_SPRETEiJ_G0016870	Sf3a1	97	85.363	Mus_spretus
ENSMAMG00000006460	sf3a1	97	85.123	ENSMPUG00000013144	SF3A1	97	85.899	Mustela_putorius_furo
ENSMAMG00000006460	sf3a1	97	85.899	ENSMLUG00000002139	SF3A1	97	85.770	Myotis_lucifugus
ENSMAMG00000006460	sf3a1	96	86.198	ENSNGAG00000016977	Sf3a1	97	85.511	Nannospalax_galili
ENSMAMG00000006460	sf3a1	96	94.909	ENSNBRG00000016642	sf3a1	97	94.641	Neolamprologus_brichardi
ENSMAMG00000006460	sf3a1	97	85.770	ENSNLEG00000003686	SF3A1	97	85.640	Nomascus_leucogenys
ENSMAMG00000006460	sf3a1	96	73.082	ENSMEUG00000008741	SF3A1	91	80.442	Notamacropus_eugenii
ENSMAMG00000006460	sf3a1	96	86.417	ENSOPRG00000016636	SF3A1	97	86.287	Ochotona_princeps
ENSMAMG00000006460	sf3a1	96	86.122	ENSODEG00000002571	SF3A1	97	85.992	Octodon_degus
ENSMAMG00000006460	sf3a1	98	94.231	ENSONIG00000010848	sf3a1	99	93.726	Oreochromis_niloticus
ENSMAMG00000006460	sf3a1	97	86.010	ENSOCUG00000007633	SF3A1	97	85.881	Oryctolagus_cuniculus
ENSMAMG00000006460	sf3a1	98	87.975	ENSORLG00000013050	sf3a1	97	91.599	Oryzias_latipes
ENSMAMG00000006460	sf3a1	99	87.065	ENSORLG00020003236	sf3a1	93	91.870	Oryzias_latipes_hni
ENSMAMG00000006460	sf3a1	97	91.839	ENSORLG00015017411	sf3a1	98	91.580	Oryzias_latipes_hsok
ENSMAMG00000006460	sf3a1	96	92.348	ENSOMEG00000013362	sf3a1	98	92.088	Oryzias_melastigma
ENSMAMG00000006460	sf3a1	97	86.028	ENSOGAG00000012931	SF3A1	97	85.899	Otolemur_garnettii
ENSMAMG00000006460	sf3a1	97	84.605	ENSOARG00000006849	SF3A1	97	84.347	Ovis_aries
ENSMAMG00000006460	sf3a1	97	84.994	ENSPPAG00000041790	SF3A1	97	84.864	Pan_paniscus
ENSMAMG00000006460	sf3a1	97	85.770	ENSPPRG00000004391	SF3A1	97	85.640	Panthera_pardus
ENSMAMG00000006460	sf3a1	97	85.640	ENSPTIG00000000844	SF3A1	99	85.511	Panthera_tigris_altaica
ENSMAMG00000006460	sf3a1	97	85.770	ENSPTRG00000014240	SF3A1	97	85.640	Pan_troglodytes
ENSMAMG00000006460	sf3a1	97	85.770	ENSPANG00000020772	SF3A1	97	85.640	Papio_anubis
ENSMAMG00000006460	sf3a1	80	91.209	ENSPSIG00000012803	SF3A1	98	91.209	Pelodiscus_sinensis
ENSMAMG00000006460	sf3a1	96	89.281	ENSPMGG00000023096	sf3a1	100	90.196	Periophthalmus_magnuspinnatus
ENSMAMG00000006460	sf3a1	95	86.711	ENSPEMG00000009494	Sf3a1	97	85.382	Peromyscus_maniculatus_bairdii
ENSMAMG00000006460	sf3a1	64	81.712	ENSPMAG00000007139	-	95	75.176	Petromyzon_marinus
ENSMAMG00000006460	sf3a1	96	84.695	ENSPCIG00000022692	SF3A1	97	85.603	Phascolarctos_cinereus
ENSMAMG00000006460	sf3a1	92	86.803	ENSPFOG00000016768	sf3a1	93	86.803	Poecilia_formosa
ENSMAMG00000006460	sf3a1	97	94.171	ENSPLAG00000017268	sf3a1	98	94.171	Poecilia_latipinna
ENSMAMG00000006460	sf3a1	96	87.518	ENSPMEG00000019811	sf3a1	98	92.782	Poecilia_mexicana
ENSMAMG00000006460	sf3a1	97	93.912	ENSPREG00000010347	sf3a1	98	93.912	Poecilia_reticulata
ENSMAMG00000006460	sf3a1	97	85.770	ENSPPYG00000011707	SF3A1	97	85.640	Pongo_abelii
ENSMAMG00000006460	sf3a1	58	85.537	ENSPCAG00000003266	SF3A1	57	85.537	Procavia_capensis
ENSMAMG00000006460	sf3a1	97	85.640	ENSPCOG00000026630	SF3A1	97	85.252	Propithecus_coquereli
ENSMAMG00000006460	sf3a1	93	86.078	ENSPVAG00000017719	SF3A1	94	85.944	Pteropus_vampyrus
ENSMAMG00000006460	sf3a1	96	94.812	ENSPNYG00000018706	sf3a1	99	93.470	Pundamilia_nyererei
ENSMAMG00000006460	sf3a1	96	90.285	ENSPNAG00000003721	sf3a1	98	90.026	Pygocentrus_nattereri
ENSMAMG00000006460	sf3a1	96	85.807	ENSRNOG00000005218	Sf3a1	97	85.104	Rattus_norvegicus
ENSMAMG00000006460	sf3a1	97	85.770	ENSRBIG00000032167	SF3A1	97	85.640	Rhinopithecus_bieti
ENSMAMG00000006460	sf3a1	97	85.770	ENSRROG00000044908	SF3A1	97	85.640	Rhinopithecus_roxellana
ENSMAMG00000006460	sf3a1	92	86.803	ENSSBOG00000021960	SF3A1	98	86.677	Saimiri_boliviensis_boliviensis
ENSMAMG00000006460	sf3a1	96	82.620	ENSSHAG00000003666	SF3A1	97	83.139	Sarcophilus_harrisii
ENSMAMG00000006460	sf3a1	96	90.686	ENSSFOG00015004579	sf3a1	98	91.591	Scleropages_formosus
ENSMAMG00000006460	sf3a1	96	91.440	ENSSMAG00000004275	sf3a1	98	90.921	Scophthalmus_maximus
ENSMAMG00000006460	sf3a1	98	95.391	ENSSDUG00000022219	sf3a1	99	95.391	Seriola_dumerili
ENSMAMG00000006460	sf3a1	98	95.391	ENSSLDG00000012642	sf3a1	99	95.391	Seriola_lalandi_dorsalis
ENSMAMG00000006460	sf3a1	97	82.665	ENSSARG00000005960	SF3A1	99	82.536	Sorex_araneus
ENSMAMG00000006460	sf3a1	95	84.286	ENSSPUG00000018863	SF3A1	97	85.438	Sphenodon_punctatus
ENSMAMG00000006460	sf3a1	96	96.628	ENSSPAG00000011856	sf3a1	98	96.628	Stegastes_partitus
ENSMAMG00000006460	sf3a1	97	85.123	ENSSSCG00000010002	SF3A1	97	85.770	Sus_scrofa
ENSMAMG00000006460	sf3a1	95	85.000	ENSTGUG00000010547	SF3A1	99	85.547	Taeniopygia_guttata
ENSMAMG00000006460	sf3a1	96	89.494	ENSTRUG00000006118	sf3a1	98	89.494	Takifugu_rubripes
ENSMAMG00000006460	sf3a1	61	89.219	ENSTNIG00000005713	sf3a1	88	89.381	Tetraodon_nigroviridis
ENSMAMG00000006460	sf3a1	97	79.301	ENSTBEG00000012771	SF3A1	97	79.172	Tupaia_belangeri
ENSMAMG00000006460	sf3a1	97	85.401	ENSTTRG00000001535	SF3A1	97	85.401	Tursiops_truncatus
ENSMAMG00000006460	sf3a1	96	84.876	ENSUAMG00000006750	SF3A1	96	84.746	Ursus_americanus
ENSMAMG00000006460	sf3a1	97	85.917	ENSUMAG00000016665	SF3A1	98	85.788	Ursus_maritimus
ENSMAMG00000006460	sf3a1	97	85.899	ENSVVUG00000003075	SF3A1	97	85.770	Vulpes_vulpes
ENSMAMG00000006460	sf3a1	95	82.392	ENSXETG00000016144	sf3a1	96	85.484	Xenopus_tropicalis
ENSMAMG00000006460	sf3a1	97	93.135	ENSXCOG00000015653	sf3a1	98	93.135	Xiphophorus_couchianus
ENSMAMG00000006460	sf3a1	97	93.394	ENSXMAG00000002753	sf3a1	98	93.394	Xiphophorus_maculatus