EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000006708 (Gene tree)
Gene ID: 113122553
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 28071 bases
Position: chrOOHQ01000075.1:26196915-26224985
Accession: 113122553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000009936	RRM_1	PF00076.22	8e-18	1	1
ENSMAMP00000009950	RRM_1	PF00076.22	8.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000010191	-	6365	-	ENSMAMP00000009936	405 (aa)	XP_026149760	UPI000E457BAE
ENSMAMT00000010205	-	6174	-	ENSMAMP00000009950	417 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000006708's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000006708's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000006708	rbm42	100	89.409	ENSAPOG00000015109	rbm42	100	89.409	Acanthochromis_polyacanthus
ENSMAMG00000006708	rbm42	100	83.498	ENSACIG00000010771	rbm42	100	83.498	Amphilophus_citrinellus
ENSMAMG00000006708	rbm42	100	89.409	ENSAOCG00000008873	rbm42	100	89.409	Amphiprion_ocellaris
ENSMAMG00000006708	rbm42	100	89.409	ENSAPEG00000012051	rbm42	99	89.409	Amphiprion_percula
ENSMAMG00000006708	rbm42	100	86.700	ENSATEG00000000536	rbm42	100	86.700	Anabas_testudineus
ENSMAMG00000006708	rbm42	100	86.453	ENSACLG00000004988	rbm42	100	86.453	Astatotilapia_calliptera
ENSMAMG00000006708	rbm42	100	74.580	ENSAMXG00000016545	rbm42	100	72.902	Astyanax_mexicanus
ENSMAMG00000006708	rbm42	97	82.620	ENSCSEG00000010248	rbm42	100	82.872	Cynoglossus_semilaevis
ENSMAMG00000006708	rbm42	100	80.488	ENSCVAG00000015589	rbm42	100	80.000	Cyprinodon_variegatus
ENSMAMG00000006708	rbm42	100	69.082	ENSDARG00000039910	rbm42	100	68.856	Danio_rerio
ENSMAMG00000006708	rbm42	100	71.596	ENSELUG00000022403	rbm42	100	70.686	Esox_lucius
ENSMAMG00000006708	rbm42	65	78.022	ENSFHEG00000006764	rbm42	91	79.487	Fundulus_heteroclitus
ENSMAMG00000006708	rbm42	100	75.182	ENSGMOG00000012660	rbm42	100	71.883	Gadus_morhua
ENSMAMG00000006708	rbm42	76	77.707	ENSGAFG00000009059	rbm42	99	80.386	Gambusia_affinis
ENSMAMG00000006708	rbm42	100	81.773	ENSGACG00000004170	rbm42	100	81.281	Gasterosteus_aculeatus
ENSMAMG00000006708	rbm42	100	86.207	ENSHBUG00000011141	rbm42	100	86.207	Haplochromis_burtoni
ENSMAMG00000006708	rbm42	100	78.133	ENSHCOG00000021214	rbm42	100	79.361	Hippocampus_comes
ENSMAMG00000006708	rbm42	100	71.090	ENSIPUG00000022365	rbm42	99	71.838	Ictalurus_punctatus
ENSMAMG00000006708	rbm42	91	78.919	ENSKMAG00000015287	rbm42	99	80.000	Kryptolebias_marmoratus
ENSMAMG00000006708	rbm42	100	80.685	ENSLBEG00000017547	rbm42	100	80.685	Labrus_bergylta
ENSMAMG00000006708	rbm42	84	81.503	ENSLBEG00000004578	-	96	81.503	Labrus_bergylta
ENSMAMG00000006708	rbm42	100	67.773	ENSLOCG00000003368	rbm42	100	67.453	Lepisosteus_oculatus
ENSMAMG00000006708	rbm42	100	86.453	ENSMZEG00005025234	rbm42	100	86.453	Maylandia_zebra
ENSMAMG00000006708	rbm42	91	91.599	ENSMALG00000015720	rbm42	100	91.599	Monopterus_albus
ENSMAMG00000006708	rbm42	100	86.797	ENSONIG00000008029	rbm42	100	86.797	Oreochromis_niloticus
ENSMAMG00000006708	rbm42	100	62.945	ENSORLG00020022507	rbm42	100	61.283	Oryzias_latipes_hni
ENSMAMG00000006708	rbm42	100	82.266	ENSORLG00015000659	rbm42	100	82.512	Oryzias_latipes_hsok
ENSMAMG00000006708	rbm42	59	84.647	ENSOMEG00000014332	rbm42	91	83.884	Oryzias_melastigma
ENSMAMG00000006708	rbm42	100	73.684	ENSPKIG00000015165	rbm42	100	71.223	Paramormyrops_kingsleyae
ENSMAMG00000006708	rbm42	90	67.692	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSMAMG00000006708	rbm42	53	58.559	ENSPMAG00000008633	rbm42	100	49.600	Petromyzon_marinus
ENSMAMG00000006708	rbm42	100	79.218	ENSPFOG00000007701	rbm42	100	77.995	Poecilia_formosa
ENSMAMG00000006708	rbm42	100	79.218	ENSPLAG00000009405	rbm42	100	77.751	Poecilia_latipinna
ENSMAMG00000006708	rbm42	100	79.462	ENSPMEG00000010375	rbm42	100	78.240	Poecilia_mexicana
ENSMAMG00000006708	rbm42	100	79.462	ENSPREG00000018102	rbm42	100	78.240	Poecilia_reticulata
ENSMAMG00000006708	rbm42	100	86.207	ENSPNYG00000014460	rbm42	100	86.207	Pundamilia_nyererei
ENSMAMG00000006708	rbm42	100	73.050	ENSPNAG00000009961	rbm42	100	71.631	Pygocentrus_nattereri
ENSMAMG00000006708	rbm42	100	72.066	ENSSFOG00015019227	rbm42	100	70.657	Scleropages_formosus
ENSMAMG00000006708	rbm42	100	85.749	ENSSMAG00000011935	rbm42	100	85.749	Scophthalmus_maximus
ENSMAMG00000006708	rbm42	100	90.394	ENSSDUG00000004033	rbm42	100	90.394	Seriola_dumerili
ENSMAMG00000006708	rbm42	100	78.818	ENSSLDG00000009918	rbm42	97	97.183	Seriola_lalandi_dorsalis
ENSMAMG00000006708	rbm42	100	89.655	ENSSPAG00000019871	rbm42	100	89.655	Stegastes_partitus
ENSMAMG00000006708	rbm42	100	80.296	ENSTRUG00000024586	-	77	78.922	Takifugu_rubripes
ENSMAMG00000006708	rbm42	99	69.545	ENSTNIG00000011669	rbm42	100	71.136	Tetraodon_nigroviridis
ENSMAMG00000006708	rbm42	100	54.484	ENSXETG00000017599	rbm42	100	57.075	Xenopus_tropicalis
ENSMAMG00000006708	rbm42	100	79.951	ENSXMAG00000012827	rbm42	100	78.729	Xiphophorus_maculatus