EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000007623 (Gene tree)
Gene ID: 113127844
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 5208 bases
Position: chrOOHQ01000044.1:3999458-4004665
Accession: ZDB-GENE-030131-6146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000011239	PPR	PF01535.20	6.1e-17	1	2
ENSMAMP00000011239	PPR	PF01535.20	6.1e-17	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000011528	-	2145	-	ENSMAMP00000011239	714 (aa)	-	-

Gene Model

Click here to download ENSMAMG00000007623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000007623's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000007623	ptcd1	85	48.571	ENSG00000106246	PTCD1	90	48.571	Homo_sapiens
ENSMAMG00000007623	ptcd1	85	48.571	ENSG00000248919	ATP5MF-PTCD1	84	48.571	Homo_sapiens
ENSMAMG00000007623	ptcd1	88	65.409	ENSAPOG00000010679	ptcd1	96	65.409	Acanthochromis_polyacanthus
ENSMAMG00000007623	ptcd1	82	50.828	ENSAMEG00000006224	-	79	50.828	Ailuropoda_melanoleuca
ENSMAMG00000007623	ptcd1	92	71.342	ENSACIG00000017861	ptcd1	97	71.342	Amphilophus_citrinellus
ENSMAMG00000007623	ptcd1	95	66.862	ENSAOCG00000020741	-	95	66.862	Amphiprion_ocellaris
ENSMAMG00000007623	ptcd1	88	66.667	ENSAOCG00000022617	ptcd1	94	66.667	Amphiprion_ocellaris
ENSMAMG00000007623	ptcd1	95	66.716	ENSAPEG00000022632	ptcd1	95	66.716	Amphiprion_percula
ENSMAMG00000007623	ptcd1	98	72.011	ENSATEG00000007016	ptcd1	99	72.011	Anabas_testudineus
ENSMAMG00000007623	ptcd1	84	48.885	ENSAPLG00000006862	-	99	48.154	Anas_platyrhynchos
ENSMAMG00000007623	ptcd1	81	49.172	ENSACAG00000012871	-	78	49.172	Anolis_carolinensis
ENSMAMG00000007623	ptcd1	80	50.423	ENSANAG00000035790	-	86	50.588	Aotus_nancymaae
ENSMAMG00000007623	ptcd1	98	68.296	ENSACLG00000002824	ptcd1	99	68.296	Astatotilapia_calliptera
ENSMAMG00000007623	ptcd1	82	51.987	ENSAMXG00000037292	ptcd1	88	51.987	Astyanax_mexicanus
ENSMAMG00000007623	ptcd1	91	47.345	ENSBTAG00000020440	-	83	47.788	Bos_taurus
ENSMAMG00000007623	ptcd1	80	51.525	ENSCJAG00000015815	-	84	51.684	Callithrix_jacchus
ENSMAMG00000007623	ptcd1	90	48.430	ENSCAFG00000015055	-	87	48.430	Canis_familiaris
ENSMAMG00000007623	ptcd1	90	48.132	ENSCAFG00020014480	-	87	48.132	Canis_lupus_dingo
ENSMAMG00000007623	ptcd1	91	47.640	ENSCHIG00000027000	-	95	47.788	Capra_hircus
ENSMAMG00000007623	ptcd1	80	49.577	ENSTSYG00000029495	-	84	49.916	Carlito_syrichta
ENSMAMG00000007623	ptcd1	83	48.618	ENSCAPG00000014660	-	92	48.618	Cavia_aperea
ENSMAMG00000007623	ptcd1	91	47.222	ENSCPOG00000001780	-	95	47.222	Cavia_porcellus
ENSMAMG00000007623	ptcd1	80	49.574	ENSCCAG00000034025	-	84	49.746	Cebus_capucinus
ENSMAMG00000007623	ptcd1	80	50.000	ENSCATG00000040859	-	88	48.875	Cercocebus_atys
ENSMAMG00000007623	ptcd1	91	48.077	ENSCLAG00000006354	-	95	48.373	Chinchilla_lanigera
ENSMAMG00000007623	ptcd1	76	50.000	ENSCSAG00000017794	-	88	48.908	Chlorocebus_sabaeus
ENSMAMG00000007623	ptcd1	92	45.670	ENSCPBG00000020866	-	94	46.067	Chrysemys_picta_bellii
ENSMAMG00000007623	ptcd1	79	30.612	ENSCING00000007717	-	99	30.612	Ciona_intestinalis
ENSMAMG00000007623	ptcd1	80	49.661	ENSCANG00000023441	-	84	50.000	Colobus_angolensis_palliatus
ENSMAMG00000007623	ptcd1	90	46.349	ENSCGRG00001023686	Ptcd1	93	47.130	Cricetulus_griseus_chok1gshd
ENSMAMG00000007623	ptcd1	88	46.995	ENSCGRG00000015031	Ptcd1	91	46.995	Cricetulus_griseus_crigri
ENSMAMG00000007623	ptcd1	97	59.187	ENSCSEG00000002378	ptcd1	99	59.046	Cynoglossus_semilaevis
ENSMAMG00000007623	ptcd1	82	71.210	ENSCVAG00000003621	ptcd1	89	71.210	Cyprinodon_variegatus
ENSMAMG00000007623	ptcd1	87	70.300	ENSCVAG00000015826	ptcd1	90	70.300	Cyprinodon_variegatus
ENSMAMG00000007623	ptcd1	81	54.591	ENSDARG00000076176	ptcd1	86	54.591	Danio_rerio
ENSMAMG00000007623	ptcd1	80	50.254	ENSDNOG00000009957	-	86	50.163	Dasypus_novemcinctus
ENSMAMG00000007623	ptcd1	91	45.685	ENSDORG00000000740	Ptcd1	95	46.445	Dipodomys_ordii
ENSMAMG00000007623	ptcd1	82	38.030	ENSEBUG00000014515	ptcd1	93	37.975	Eptatretus_burgeri
ENSMAMG00000007623	ptcd1	89	48.137	ENSEASG00005002480	-	93	48.435	Equus_asinus_asinus
ENSMAMG00000007623	ptcd1	89	47.690	ENSECAG00000016617	-	93	48.286	Equus_caballus
ENSMAMG00000007623	ptcd1	91	54.623	ENSELUG00000016517	ptcd1	94	54.623	Esox_lucius
ENSMAMG00000007623	ptcd1	89	47.344	ENSFCAG00000015069	-	90	47.786	Felis_catus
ENSMAMG00000007623	ptcd1	83	46.687	ENSFALG00000013803	-	89	47.050	Ficedula_albicollis
ENSMAMG00000007623	ptcd1	91	47.345	ENSFDAG00000006393	-	95	47.153	Fukomys_damarensis
ENSMAMG00000007623	ptcd1	75	70.513	ENSFHEG00000012491	ptcd1	94	70.513	Fundulus_heteroclitus
ENSMAMG00000007623	ptcd1	86	62.179	ENSGMOG00000007639	ptcd1	100	62.179	Gadus_morhua
ENSMAMG00000007623	ptcd1	80	49.100	ENSGALG00000004711	-	84	48.864	Gallus_gallus
ENSMAMG00000007623	ptcd1	91	66.617	ENSGAFG00000013175	ptcd1	95	66.617	Gambusia_affinis
ENSMAMG00000007623	ptcd1	88	69.410	ENSGACG00000016607	ptcd1	99	69.410	Gasterosteus_aculeatus
ENSMAMG00000007623	ptcd1	87	46.851	ENSGAGG00000021832	-	97	46.851	Gopherus_agassizii
ENSMAMG00000007623	ptcd1	85	48.119	ENSGGOG00000015123	-	90	48.119	Gorilla_gorilla
ENSMAMG00000007623	ptcd1	98	68.392	ENSHBUG00000018275	ptcd1	99	68.392	Haplochromis_burtoni
ENSMAMG00000007623	ptcd1	90	47.455	ENSHGLG00000017621	-	94	47.605	Heterocephalus_glaber_female
ENSMAMG00000007623	ptcd1	90	47.455	ENSHGLG00100007218	-	94	47.605	Heterocephalus_glaber_male
ENSMAMG00000007623	ptcd1	98	56.879	ENSHCOG00000010784	ptcd1	99	57.447	Hippocampus_comes
ENSMAMG00000007623	ptcd1	89	48.239	ENSSTOG00000001682	-	92	48.392	Ictidomys_tridecemlineatus
ENSMAMG00000007623	ptcd1	89	48.260	ENSJJAG00000000319	Ptcd1	93	48.260	Jaculus_jaculus
ENSMAMG00000007623	ptcd1	99	64.525	ENSKMAG00000008708	ptcd1	100	64.665	Kryptolebias_marmoratus
ENSMAMG00000007623	ptcd1	98	67.220	ENSLBEG00000008061	ptcd1	99	67.033	Labrus_bergylta
ENSMAMG00000007623	ptcd1	80	50.924	ENSLACG00000011172	ptcd1	83	51.261	Latimeria_chalumnae
ENSMAMG00000007623	ptcd1	85	51.468	ENSLOCG00000004833	ptcd1	97	51.438	Lepisosteus_oculatus
ENSMAMG00000007623	ptcd1	81	49.833	ENSLAFG00000002588	-	84	49.833	Loxodonta_africana
ENSMAMG00000007623	ptcd1	80	50.000	ENSMFAG00000041324	-	88	48.875	Macaca_fascicularis
ENSMAMG00000007623	ptcd1	80	49.829	ENSMMUG00000030408	-	88	48.714	Macaca_mulatta
ENSMAMG00000007623	ptcd1	80	50.000	ENSMNEG00000043786	-	88	48.875	Macaca_nemestrina
ENSMAMG00000007623	ptcd1	80	37.370	ENSMLEG00000031179	-	87	42.276	Mandrillus_leucophaeus
ENSMAMG00000007623	ptcd1	98	68.156	ENSMZEG00005012722	ptcd1	99	68.156	Maylandia_zebra
ENSMAMG00000007623	ptcd1	79	49.916	ENSMGAG00000004211	-	77	49.916	Meleagris_gallopavo
ENSMAMG00000007623	ptcd1	80	48.495	ENSMICG00000017428	-	84	49.076	Microcebus_murinus
ENSMAMG00000007623	ptcd1	98	68.690	ENSMMOG00000020243	ptcd1	99	68.828	Mola_mola
ENSMAMG00000007623	ptcd1	84	46.384	ENSMODG00000001350	-	86	46.384	Monodelphis_domestica
ENSMAMG00000007623	ptcd1	98	75.070	ENSMALG00000018442	ptcd1	99	75.210	Monopterus_albus
ENSMAMG00000007623	ptcd1	89	47.648	MGP_CAROLIEiJ_G0028011	Ptcd1	93	47.648	Mus_caroli
ENSMAMG00000007623	ptcd1	81	48.818	ENSMUSG00000029624	Ptcd1	85	48.567	Mus_musculus
ENSMAMG00000007623	ptcd1	81	49.336	MGP_PahariEiJ_G0024580	Ptcd1	85	49.251	Mus_pahari
ENSMAMG00000007623	ptcd1	81	48.904	MGP_SPRETEiJ_G0029012	Ptcd1	85	49.076	Mus_spretus
ENSMAMG00000007623	ptcd1	94	47.550	ENSMPUG00000016518	-	97	47.619	Mustela_putorius_furo
ENSMAMG00000007623	ptcd1	95	47.383	ENSMLUG00000010994	-	94	47.525	Myotis_lucifugus
ENSMAMG00000007623	ptcd1	97	66.384	ENSNBRG00000010079	ptcd1	98	68.613	Neolamprologus_brichardi
ENSMAMG00000007623	ptcd1	72	48.881	ENSNLEG00000011060	-	90	48.881	Nomascus_leucogenys
ENSMAMG00000007623	ptcd1	80	48.667	ENSMEUG00000006930	-	84	48.667	Notamacropus_eugenii
ENSMAMG00000007623	ptcd1	75	63.248	ENSOPRG00000013647	-	78	64.103	Ochotona_princeps
ENSMAMG00000007623	ptcd1	83	69.435	ENSONIG00000003168	ptcd1	99	69.435	Oreochromis_niloticus
ENSMAMG00000007623	ptcd1	81	45.261	ENSOANG00000007728	-	78	45.261	Ornithorhynchus_anatinus
ENSMAMG00000007623	ptcd1	80	50.339	ENSOCUG00000010584	-	82	50.420	Oryctolagus_cuniculus
ENSMAMG00000007623	ptcd1	95	64.327	ENSORLG00000009275	ptcd1	99	64.327	Oryzias_latipes
ENSMAMG00000007623	ptcd1	95	64.766	ENSORLG00020000988	ptcd1	99	64.766	Oryzias_latipes_hni
ENSMAMG00000007623	ptcd1	95	64.181	ENSORLG00015010557	ptcd1	99	64.181	Oryzias_latipes_hsok
ENSMAMG00000007623	ptcd1	95	65.390	ENSOMEG00000020627	ptcd1	99	65.390	Oryzias_melastigma
ENSMAMG00000007623	ptcd1	80	47.789	ENSOGAG00000010877	-	86	47.500	Otolemur_garnettii
ENSMAMG00000007623	ptcd1	91	44.741	ENSOARG00000018676	-	96	44.889	Ovis_aries
ENSMAMG00000007623	ptcd1	85	48.494	ENSPPAG00000036024	-	90	48.423	Pan_paniscus
ENSMAMG00000007623	ptcd1	80	50.842	ENSPPRG00000003478	-	85	50.842	Panthera_pardus
ENSMAMG00000007623	ptcd1	86	48.418	ENSPTRG00000019452	-	90	48.346	Pan_troglodytes
ENSMAMG00000007623	ptcd1	80	50.341	ENSPANG00000016730	-	88	49.196	Papio_anubis
ENSMAMG00000007623	ptcd1	86	51.577	ENSPKIG00000014215	ptcd1	93	51.577	Paramormyrops_kingsleyae
ENSMAMG00000007623	ptcd1	80	48.900	ENSPSIG00000011184	-	98	49.322	Pelodiscus_sinensis
ENSMAMG00000007623	ptcd1	70	42.035	ENSPMAG00000009667	ptcd1	100	42.035	Petromyzon_marinus
ENSMAMG00000007623	ptcd1	80	47.525	ENSPCIG00000024778	-	82	47.525	Phascolarctos_cinereus
ENSMAMG00000007623	ptcd1	97	62.937	ENSPFOG00000004458	ptcd1	99	63.077	Poecilia_formosa
ENSMAMG00000007623	ptcd1	97	63.202	ENSPLAG00000011051	ptcd1	99	63.202	Poecilia_latipinna
ENSMAMG00000007623	ptcd1	97	63.370	ENSPMEG00000020547	ptcd1	99	63.510	Poecilia_mexicana
ENSMAMG00000007623	ptcd1	97	62.059	ENSPREG00000000059	ptcd1	99	62.623	Poecilia_reticulata
ENSMAMG00000007623	ptcd1	80	50.167	ENSPPYG00000017377	-	89	50.167	Pongo_abelii
ENSMAMG00000007623	ptcd1	73	56.115	ENSPCAG00000001852	-	83	56.115	Procavia_capensis
ENSMAMG00000007623	ptcd1	81	48.595	ENSPCOG00000018596	-	85	49.416	Propithecus_coquereli
ENSMAMG00000007623	ptcd1	62	50.568	ENSPVAG00000007529	-	68	50.568	Pteropus_vampyrus
ENSMAMG00000007623	ptcd1	98	68.436	ENSPNYG00000019993	ptcd1	99	68.436	Pundamilia_nyererei
ENSMAMG00000007623	ptcd1	84	52.681	ENSPNAG00000014931	ptcd1	94	52.115	Pygocentrus_nattereri
ENSMAMG00000007623	ptcd1	83	48.019	ENSRNOG00000000987	Ptcd1	90	48.095	Rattus_norvegicus
ENSMAMG00000007623	ptcd1	80	49.666	ENSRBIG00000043393	-	84	50.000	Rhinopithecus_bieti
ENSMAMG00000007623	ptcd1	80	50.507	ENSRROG00000036420	-	84	50.845	Rhinopithecus_roxellana
ENSMAMG00000007623	ptcd1	80	50.508	ENSSBOG00000024114	-	84	50.673	Saimiri_boliviensis_boliviensis
ENSMAMG00000007623	ptcd1	84	46.805	ENSSHAG00000011376	-	93	46.805	Sarcophilus_harrisii
ENSMAMG00000007623	ptcd1	88	52.252	ENSSFOG00015007909	ptcd1	86	52.744	Scleropages_formosus
ENSMAMG00000007623	ptcd1	87	68.730	ENSSMAG00000000218	ptcd1	99	68.730	Scophthalmus_maximus
ENSMAMG00000007623	ptcd1	95	73.654	ENSSDUG00000015671	ptcd1	98	75.559	Seriola_dumerili
ENSMAMG00000007623	ptcd1	92	75.373	ENSSLDG00000014261	ptcd1	99	72.914	Seriola_lalandi_dorsalis
ENSMAMG00000007623	ptcd1	86	46.177	ENSSPUG00000003540	-	85	47.724	Sphenodon_punctatus
ENSMAMG00000007623	ptcd1	99	66.941	ENSSPAG00000011049	ptcd1	99	67.078	Stegastes_partitus
ENSMAMG00000007623	ptcd1	80	49.916	ENSSSCG00000007622	-	90	49.917	Sus_scrofa
ENSMAMG00000007623	ptcd1	80	48.649	ENSTGUG00000007563	-	96	48.986	Taeniopygia_guttata
ENSMAMG00000007623	ptcd1	95	65.029	ENSTRUG00000013471	ptcd1	99	63.850	Takifugu_rubripes
ENSMAMG00000007623	ptcd1	94	63.250	ENSTNIG00000008271	ptcd1	99	63.250	Tetraodon_nigroviridis
ENSMAMG00000007623	ptcd1	85	47.937	ENSTBEG00000011021	-	89	47.937	Tupaia_belangeri
ENSMAMG00000007623	ptcd1	86	48.903	ENSTTRG00000003006	-	90	48.903	Tursiops_truncatus
ENSMAMG00000007623	ptcd1	82	49.917	ENSUAMG00000008049	-	85	50.083	Ursus_americanus
ENSMAMG00000007623	ptcd1	90	48.430	ENSVVUG00000008836	-	94	48.430	Vulpes_vulpes
ENSMAMG00000007623	ptcd1	80	49.660	ENSXETG00000009891	ptcd1	85	49.660	Xenopus_tropicalis
ENSMAMG00000007623	ptcd1	98	63.827	ENSXMAG00000015540	ptcd1	99	63.827	Xiphophorus_maculatus