EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000008033 (Gene tree)
Gene ID: 113134802
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 8450 bases
Position: chrOOHQ01000035.1:20162325-20170774
Accession: 113134802
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000011861	RRM_1	PF00076.22	1.4e-12	1	1
ENSMAMP00000011892	RRM_1	PF00076.22	1.4e-12	1	1
ENSMAMP00000011875	RRM_1	PF00076.22	1.7e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000012211	-	3264	-	ENSMAMP00000011892	297 (aa)	-	-
ENSMAMT00000012179	-	3425	-	ENSMAMP00000011861	287 (aa)	-	-
ENSMAMT00000012193	-	2839	-	ENSMAMP00000011875	320 (aa)	XP_026170107	UPI000E45B751

Gene Model

Click here to download ENSMAMG00000008033's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000008033's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000008033	-	80	56.356	ENSMAMG00000001723	-	85	52.964
ENSMAMG00000008033	-	89	42.456	ENSMAMG00000012529	raly	58	49.528
ENSMAMG00000008033	-	88	82.745	ENSMAMG00000012236	-	94	77.739

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000008033	-	74	58.411	ENSG00000184672	RALYL	93	77.215	Homo_sapiens
ENSMAMG00000008033	-	88	85.098	ENSAPOG00000006963	hnrnpc	85	80.075	Acanthochromis_polyacanthus
ENSMAMG00000008033	-	89	82.375	ENSACIG00000000270	-	82	86.697	Amphilophus_citrinellus
ENSMAMG00000008033	-	97	89.068	ENSACIG00000016568	-	100	89.389	Amphilophus_citrinellus
ENSMAMG00000008033	-	100	90.432	ENSAOCG00000021616	-	83	93.633	Amphiprion_ocellaris
ENSMAMG00000008033	-	88	85.098	ENSAOCG00000003896	-	85	80.075	Amphiprion_ocellaris
ENSMAMG00000008033	-	90	94.007	ENSAPEG00000019962	-	85	93.633	Amphiprion_percula
ENSMAMG00000008033	-	88	85.098	ENSAPEG00000001489	-	85	80.075	Amphiprion_percula
ENSMAMG00000008033	-	89	82.625	ENSATEG00000011734	-	85	81.081	Anabas_testudineus
ENSMAMG00000008033	-	90	96.992	ENSATEG00000018006	-	83	96.992	Anabas_testudineus
ENSMAMG00000008033	-	74	54.425	ENSAPLG00000015574	RALYL	76	55.804	Anas_platyrhynchos
ENSMAMG00000008033	-	74	56.195	ENSACAG00000028464	RALYL	75	56.250	Anolis_carolinensis
ENSMAMG00000008033	-	74	58.411	ENSANAG00000023383	RALYL	74	58.491	Aotus_nancymaae
ENSMAMG00000008033	-	89	93.725	ENSACLG00000005707	-	90	92.565	Astatotilapia_calliptera
ENSMAMG00000008033	-	88	81.569	ENSACLG00000000995	-	94	76.426	Astatotilapia_calliptera
ENSMAMG00000008033	-	85	83.333	ENSACLG00000013636	-	85	82.101	Astatotilapia_calliptera
ENSMAMG00000008033	-	73	76.667	ENSAMXG00000042946	hnrnpc	97	75.263	Astyanax_mexicanus
ENSMAMG00000008033	-	89	78.947	ENSAMXG00000034915	zgc:55733	91	75.940	Astyanax_mexicanus
ENSMAMG00000008033	-	74	58.411	ENSCJAG00000000402	RALYL	74	58.491	Callithrix_jacchus
ENSMAMG00000008033	-	73	56.502	ENSCPOG00000012314	RALYL	75	56.054	Cavia_porcellus
ENSMAMG00000008033	-	74	58.411	ENSCCAG00000025003	RALYL	77	77.215	Cebus_capucinus
ENSMAMG00000008033	-	74	58.411	ENSCATG00000042145	RALYL	74	58.491	Cercocebus_atys
ENSMAMG00000008033	-	74	56.000	ENSCLAG00000005228	RALYL	75	56.054	Chinchilla_lanigera
ENSMAMG00000008033	-	74	54.867	ENSCHOG00000013228	RALYL	75	51.948	Choloepus_hoffmanni
ENSMAMG00000008033	-	74	58.411	ENSCANG00000039144	RALYL	74	58.491	Colobus_angolensis_palliatus
ENSMAMG00000008033	-	74	55.752	ENSCGRG00001009241	Ralyl	75	56.696	Cricetulus_griseus_chok1gshd
ENSMAMG00000008033	-	84	90.000	ENSCSEG00000021349	-	82	85.338	Cynoglossus_semilaevis
ENSMAMG00000008033	-	77	76.339	ENSCSEG00000019769	-	75	74.107	Cynoglossus_semilaevis
ENSMAMG00000008033	-	96	66.786	ENSCVAG00000002797	-	86	66.923	Cyprinodon_variegatus
ENSMAMG00000008033	-	100	85.015	ENSCVAG00000016981	-	100	82.769	Cyprinodon_variegatus
ENSMAMG00000008033	-	82	80.169	ENSDARG00000053810	hnrnpc	99	70.807	Danio_rerio
ENSMAMG00000008033	-	89	80.377	ENSDARG00000103845	zgc:55733	93	75.954	Danio_rerio
ENSMAMG00000008033	-	74	56.637	ENSDORG00000003721	Ralyl	75	57.143	Dipodomys_ordii
ENSMAMG00000008033	-	57	56.897	ENSETEG00000014028	RALYL	82	59.877	Echinops_telfairi
ENSMAMG00000008033	-	97	42.657	ENSEBUG00000006049	RALYL	74	48.387	Eptatretus_burgeri
ENSMAMG00000008033	-	93	42.446	ENSEBUG00000012363	hnrnpc	76	42.308	Eptatretus_burgeri
ENSMAMG00000008033	-	74	56.195	ENSEEUG00000007202	RALYL	76	56.054	Erinaceus_europaeus
ENSMAMG00000008033	-	90	81.154	ENSELUG00000004132	-	99	75.161	Esox_lucius
ENSMAMG00000008033	-	85	79.926	ENSELUG00000007714	-	93	76.895	Esox_lucius
ENSMAMG00000008033	-	74	58.333	ENSFALG00000008647	RALYL	97	57.944	Ficedula_albicollis
ENSMAMG00000008033	-	86	86.641	ENSFHEG00000007278	-	100	77.607	Fundulus_heteroclitus
ENSMAMG00000008033	-	94	75.725	ENSFHEG00000003605	-	95	70.648	Fundulus_heteroclitus
ENSMAMG00000008033	-	93	41.566	ENSGALG00000036938	RALYL	75	55.804	Gallus_gallus
ENSMAMG00000008033	-	97	85.623	ENSGAFG00000020992	-	100	84.345	Gambusia_affinis
ENSMAMG00000008033	-	94	75.000	ENSGAFG00000020486	-	81	80.184	Gambusia_affinis
ENSMAMG00000008033	-	88	87.843	ENSGACG00000017772	-	98	88.235	Gasterosteus_aculeatus
ENSMAMG00000008033	-	75	75.463	ENSGACG00000018932	-	87	69.725	Gasterosteus_aculeatus
ENSMAMG00000008033	-	74	58.411	ENSGGOG00000000841	RALYL	74	58.491	Gorilla_gorilla
ENSMAMG00000008033	-	88	81.961	ENSHBUG00000018342	-	85	80.827	Haplochromis_burtoni
ENSMAMG00000008033	-	100	87.926	ENSHBUG00000010527	-	100	87.616	Haplochromis_burtoni
ENSMAMG00000008033	-	74	55.556	ENSHGLG00000004866	RALYL	75	55.605	Heterocephalus_glaber_female
ENSMAMG00000008033	-	74	55.556	ENSHGLG00100017480	RALYL	75	55.605	Heterocephalus_glaber_male
ENSMAMG00000008033	-	87	85.878	ENSHCOG00000012333	hnrnpc	91	85.305	Hippocampus_comes
ENSMAMG00000008033	-	89	79.216	ENSIPUG00000011271	hnrnpc	97	79.911	Ictalurus_punctatus
ENSMAMG00000008033	-	89	81.203	ENSIPUG00000008666	zgc:55733	93	79.907	Ictalurus_punctatus
ENSMAMG00000008033	-	74	56.195	ENSSTOG00000012583	RALYL	76	56.696	Ictidomys_tridecemlineatus
ENSMAMG00000008033	-	96	78.058	ENSKMAG00000011170	-	84	80.228	Kryptolebias_marmoratus
ENSMAMG00000008033	-	100	88.820	ENSKMAG00000018265	-	83	91.386	Kryptolebias_marmoratus
ENSMAMG00000008033	-	100	86.562	ENSLBEG00000006193	-	100	87.500	Labrus_bergylta
ENSMAMG00000008033	-	98	73.220	ENSLBEG00000024418	-	86	72.624	Labrus_bergylta
ENSMAMG00000008033	-	94	77.372	ENSLBEG00000006979	-	85	76.305	Labrus_bergylta
ENSMAMG00000008033	-	86	69.732	ENSLOCG00000002560	hnrnpc	91	69.004	Lepisosteus_oculatus
ENSMAMG00000008033	-	74	58.411	ENSMNEG00000033288	RALYL	74	58.491	Macaca_nemestrina
ENSMAMG00000008033	-	74	58.411	ENSMLEG00000038284	RALYL	74	58.491	Mandrillus_leucophaeus
ENSMAMG00000008033	-	88	81.569	ENSMZEG00005020460	-	88	79.771	Maylandia_zebra
ENSMAMG00000008033	-	100	88.235	ENSMZEG00005024249	-	100	87.926	Maylandia_zebra
ENSMAMG00000008033	-	74	55.752	ENSMAUG00000015149	Ralyl	75	56.696	Mesocricetus_auratus
ENSMAMG00000008033	-	74	57.674	ENSMICG00000005558	RALYL	80	77.215	Microcebus_murinus
ENSMAMG00000008033	-	74	55.752	ENSMOCG00000017371	Ralyl	75	56.696	Microtus_ochrogaster
ENSMAMG00000008033	-	89	82.558	ENSMMOG00000021465	-	92	80.377	Mola_mola
ENSMAMG00000008033	-	90	87.671	ENSMMOG00000019520	-	100	82.313	Mola_mola
ENSMAMG00000008033	-	89	73.930	ENSMALG00000007520	-	85	71.984	Monopterus_albus
ENSMAMG00000008033	-	90	89.513	ENSMALG00000014623	-	84	89.888	Monopterus_albus
ENSMAMG00000008033	-	74	55.310	ENSMUSG00000039717	Ralyl	93	75.949	Mus_musculus
ENSMAMG00000008033	-	74	57.080	ENSMPUG00000010724	RALYL	75	55.804	Mustela_putorius_furo
ENSMAMG00000008033	-	74	55.752	ENSNGAG00000013375	Ralyl	75	56.696	Nannospalax_galili
ENSMAMG00000008033	-	89	82.239	ENSNBRG00000004912	-	93	82.301	Neolamprologus_brichardi
ENSMAMG00000008033	-	100	89.474	ENSNBRG00000015676	-	100	90.093	Neolamprologus_brichardi
ENSMAMG00000008033	-	74	58.411	ENSNLEG00000002702	RALYL	71	58.491	Nomascus_leucogenys
ENSMAMG00000008033	-	62	51.295	ENSOPRG00000013650	-	98	49.215	Ochotona_princeps
ENSMAMG00000008033	-	74	55.556	ENSODEG00000001012	RALYL	75	55.605	Octodon_degus
ENSMAMG00000008033	-	100	88.235	ENSONIG00000018350	-	100	87.926	Oreochromis_niloticus
ENSMAMG00000008033	-	88	82.745	ENSONIG00000007859	-	93	81.752	Oreochromis_niloticus
ENSMAMG00000008033	-	100	82.831	ENSORLG00000003144	-	82	89.051	Oryzias_latipes
ENSMAMG00000008033	-	88	73.152	ENSORLG00000009999	-	85	70.522	Oryzias_latipes
ENSMAMG00000008033	-	88	72.763	ENSORLG00020018228	hnrnpc	85	70.149	Oryzias_latipes_hni
ENSMAMG00000008033	-	88	73.152	ENSORLG00015019755	-	85	70.522	Oryzias_latipes_hsok
ENSMAMG00000008033	-	100	82.934	ENSORLG00015009460	-	82	89.051	Oryzias_latipes_hsok
ENSMAMG00000008033	-	88	74.708	ENSOMEG00000020488	-	93	70.548	Oryzias_melastigma
ENSMAMG00000008033	-	100	86.293	ENSOMEG00000022665	-	100	86.293	Oryzias_melastigma
ENSMAMG00000008033	-	74	58.411	ENSPPAG00000038705	RALYL	74	58.491	Pan_paniscus
ENSMAMG00000008033	-	73	61.215	ENSPPRG00000018612	RALYL	74	59.346	Panthera_pardus
ENSMAMG00000008033	-	73	61.215	ENSPTIG00000020331	RALYL	74	59.346	Panthera_tigris_altaica
ENSMAMG00000008033	-	74	58.411	ENSPTRG00000020381	RALYL	74	58.491	Pan_troglodytes
ENSMAMG00000008033	-	74	58.411	ENSPANG00000029305	RALYL	74	58.491	Papio_anubis
ENSMAMG00000008033	-	90	79.779	ENSPKIG00000008592	-	100	75.767	Paramormyrops_kingsleyae
ENSMAMG00000008033	-	89	79.771	ENSPKIG00000022837	-	98	79.128	Paramormyrops_kingsleyae
ENSMAMG00000008033	-	74	56.195	ENSPSIG00000011135	RALYL	75	55.804	Pelodiscus_sinensis
ENSMAMG00000008033	-	77	90.498	ENSPMGG00000013144	-	83	86.425	Periophthalmus_magnuspinnatus
ENSMAMG00000008033	-	92	64.068	ENSPMGG00000017774	-	96	64.069	Periophthalmus_magnuspinnatus
ENSMAMG00000008033	-	74	55.752	ENSPEMG00000016447	Ralyl	75	56.696	Peromyscus_maniculatus_bairdii
ENSMAMG00000008033	-	74	53.304	ENSPMAG00000002407	RALYL	97	52.000	Petromyzon_marinus
ENSMAMG00000008033	-	94	75.273	ENSPFOG00000001583	-	86	76.779	Poecilia_formosa
ENSMAMG00000008033	-	100	85.449	ENSPFOG00000002643	-	100	83.901	Poecilia_formosa
ENSMAMG00000008033	-	100	84.877	ENSPLAG00000000061	-	100	82.407	Poecilia_latipinna
ENSMAMG00000008033	-	94	74.182	ENSPLAG00000015305	-	86	75.655	Poecilia_latipinna
ENSMAMG00000008033	-	94	76.812	ENSPMEG00000004802	-	86	76.779	Poecilia_mexicana
ENSMAMG00000008033	-	100	84.830	ENSPMEG00000016524	-	100	83.282	Poecilia_mexicana
ENSMAMG00000008033	-	90	90.602	ENSPREG00000001852	-	89	89.850	Poecilia_reticulata
ENSMAMG00000008033	-	84	78.862	ENSPREG00000007928	-	86	76.030	Poecilia_reticulata
ENSMAMG00000008033	-	66	48.341	ENSPPYG00000018710	-	63	72.115	Pongo_abelii
ENSMAMG00000008033	-	78	53.586	ENSPVAG00000010821	RALYL	78	53.617	Pteropus_vampyrus
ENSMAMG00000008033	-	90	92.193	ENSPNYG00000003747	-	90	92.193	Pundamilia_nyererei
ENSMAMG00000008033	-	89	82.625	ENSPNYG00000020293	-	89	79.433	Pundamilia_nyererei
ENSMAMG00000008033	-	82	80.085	ENSPNAG00000015686	hnrnpc	89	79.026	Pygocentrus_nattereri
ENSMAMG00000008033	-	89	76.015	ENSPNAG00000019200	zgc:55733	95	72.069	Pygocentrus_nattereri
ENSMAMG00000008033	-	74	58.411	ENSRROG00000023925	RALYL	82	75.309	Rhinopithecus_roxellana
ENSMAMG00000008033	-	89	80.916	ENSSFOG00015012924	-	80	94.937	Scleropages_formosus
ENSMAMG00000008033	-	90	78.229	ENSSFOG00015012015	-	84	83.562	Scleropages_formosus
ENSMAMG00000008033	-	100	83.951	ENSSMAG00000011147	-	79	93.953	Scophthalmus_maximus
ENSMAMG00000008033	-	88	78.039	ENSSMAG00000013592	-	84	76.296	Scophthalmus_maximus
ENSMAMG00000008033	-	100	85.047	ENSSDUG00000006730	-	100	84.112	Seriola_dumerili
ENSMAMG00000008033	-	94	80.952	ENSSDUG00000001723	-	85	81.579	Seriola_dumerili
ENSMAMG00000008033	-	90	89.513	ENSSLDG00000007474	-	92	88.764	Seriola_lalandi_dorsalis
ENSMAMG00000008033	-	94	80.586	ENSSLDG00000007454	-	86	81.203	Seriola_lalandi_dorsalis
ENSMAMG00000008033	-	94	80.657	ENSSPAG00000023204	-	85	81.203	Stegastes_partitus
ENSMAMG00000008033	-	100	92.500	ENSSPAG00000013996	-	84	95.489	Stegastes_partitus
ENSMAMG00000008033	-	96	43.614	ENSTGUG00000011689	RALYL	86	51.587	Taeniopygia_guttata
ENSMAMG00000008033	-	89	82.101	ENSTRUG00000020158	-	92	76.950	Takifugu_rubripes
ENSMAMG00000008033	-	89	79.693	ENSTNIG00000007427	-	84	79.310	Tetraodon_nigroviridis
ENSMAMG00000008033	-	89	78.516	ENSTNIG00000000334	-	94	76.806	Tetraodon_nigroviridis
ENSMAMG00000008033	-	74	49.107	ENSTBEG00000005551	RALYL	87	50.450	Tupaia_belangeri
ENSMAMG00000008033	-	74	54.751	ENSTTRG00000015762	RALYL	74	54.587	Tursiops_truncatus
ENSMAMG00000008033	-	74	54.419	ENSVPAG00000008501	RALYL	74	54.206	Vicugna_pacos
ENSMAMG00000008033	-	54	90.184	ENSXCOG00000019434	-	69	88.957	Xiphophorus_couchianus
ENSMAMG00000008033	-	95	70.758	ENSXCOG00000006552	-	82	70.428	Xiphophorus_couchianus
ENSMAMG00000008033	-	94	76.812	ENSXMAG00000009333	-	86	75.655	Xiphophorus_maculatus
ENSMAMG00000008033	-	90	89.850	ENSXMAG00000022849	-	86	89.098	Xiphophorus_maculatus