EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMAMG00000010168 (Gene tree)
Gene ID: 113134463
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Plus strand
Length: 4692 bases
Position: chrOOHQ01000035.1:11888482-11893173
Accession: 113134463
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000014996	RRM_1	PF00076.22	5.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000015413	-	3793	-	ENSMAMP00000014996	182 (aa)	XP_026169637	UPI000E461640

Gene Model

Click here to download ENSMAMG00000010168's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000010168's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMAMG00000010168	cirbpa	63	39.773	ENSMAMG00000004971	hnrnpd	56	41.250
ENSMAMG00000010168	cirbpa	58	45.122	ENSMAMG00000017754	HNRNPA0	61	45.122

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000010168	cirbpa	73	87.970	ENSAPOG00000004458	cirbpa	100	73.096	Acanthochromis_polyacanthus
ENSMAMG00000010168	cirbpa	100	85.870	ENSACIG00000016116	cirbpa	100	83.152	Amphilophus_citrinellus
ENSMAMG00000010168	cirbpa	100	68.280	ENSAOCG00000016212	cirbpa	100	72.105	Amphiprion_ocellaris
ENSMAMG00000010168	cirbpa	100	66.129	ENSAPEG00000011989	cirbpa	100	73.158	Amphiprion_percula
ENSMAMG00000010168	cirbpa	100	91.803	ENSATEG00000014985	cirbpa	100	91.257	Anabas_testudineus
ENSMAMG00000010168	cirbpa	100	86.413	ENSACLG00000002094	-	100	83.696	Astatotilapia_calliptera
ENSMAMG00000010168	cirbpa	100	55.392	ENSAMXG00000015612	cirbpb	84	57.353	Astyanax_mexicanus
ENSMAMG00000010168	cirbpa	100	65.128	ENSCSEG00000014344	cirbpa	100	63.265	Cynoglossus_semilaevis
ENSMAMG00000010168	cirbpa	100	77.838	ENSCVAG00000004853	cirbpa	100	79.459	Cyprinodon_variegatus
ENSMAMG00000010168	cirbpa	100	59.677	ENSDARG00000103672	cirbpa	100	58.602	Danio_rerio
ENSMAMG00000010168	cirbpa	99	75.676	ENSFHEG00000002580	cirbpa	100	76.757	Fundulus_heteroclitus
ENSMAMG00000010168	cirbpa	99	53.731	ENSGMOG00000007179	cirbpb	98	51.000	Gadus_morhua
ENSMAMG00000010168	cirbpa	100	75.676	ENSGAFG00000008654	cirbpa	100	78.919	Gambusia_affinis
ENSMAMG00000010168	cirbpa	100	66.492	ENSGACG00000015206	cirbpa	100	66.842	Gasterosteus_aculeatus
ENSMAMG00000010168	cirbpa	100	59.890	ENSGACG00000014978	-	51	82.558	Gasterosteus_aculeatus
ENSMAMG00000010168	cirbpa	100	85.326	ENSHBUG00000022060	cirbpa	100	82.609	Haplochromis_burtoni
ENSMAMG00000010168	cirbpa	100	77.717	ENSKMAG00000005905	cirbpa	100	74.457	Kryptolebias_marmoratus
ENSMAMG00000010168	cirbpa	60	78.182	ENSLBEG00000027731	-	66	82.716	Labrus_bergylta
ENSMAMG00000010168	cirbpa	100	64.286	ENSLBEG00000000292	cirbpa	100	62.032	Labrus_bergylta
ENSMAMG00000010168	cirbpa	100	85.326	ENSMZEG00005025577	-	100	82.609	Maylandia_zebra
ENSMAMG00000010168	cirbpa	100	87.912	ENSMALG00000020092	cirbpa	100	87.912	Monopterus_albus
ENSMAMG00000010168	cirbpa	100	85.326	ENSNBRG00000019658	cirbpa	100	82.609	Neolamprologus_brichardi
ENSMAMG00000010168	cirbpa	100	84.783	ENSONIG00000010169	cirbpa	100	82.065	Oreochromis_niloticus
ENSMAMG00000010168	cirbpa	100	80.435	ENSORLG00000015433	cirbpa	100	76.630	Oryzias_latipes
ENSMAMG00000010168	cirbpa	100	80.435	ENSORLG00020016909	cirbpa	100	76.630	Oryzias_latipes_hni
ENSMAMG00000010168	cirbpa	100	80.435	ENSORLG00015016636	cirbpa	100	76.630	Oryzias_latipes_hsok
ENSMAMG00000010168	cirbpa	100	82.514	ENSOMEG00000021469	cirbpa	73	75.410	Oryzias_melastigma
ENSMAMG00000010168	cirbpa	99	68.478	ENSPMGG00000017342	cirbpa	95	68.280	Periophthalmus_magnuspinnatus
ENSMAMG00000010168	cirbpa	100	80.214	ENSPFOG00000015653	cirbpa	100	82.353	Poecilia_formosa
ENSMAMG00000010168	cirbpa	99	80.541	ENSPLAG00000011125	cirbpa	100	82.703	Poecilia_latipinna
ENSMAMG00000010168	cirbpa	100	80.645	ENSPMEG00000013878	cirbpa	100	82.796	Poecilia_mexicana
ENSMAMG00000010168	cirbpa	99	84.066	ENSPREG00000018042	cirbpa	98	84.066	Poecilia_reticulata
ENSMAMG00000010168	cirbpa	100	85.326	ENSPNYG00000007198	-	100	82.609	Pundamilia_nyererei
ENSMAMG00000010168	cirbpa	100	57.711	ENSPNAG00000019997	cirbpb	100	56.716	Pygocentrus_nattereri
ENSMAMG00000010168	cirbpa	100	61.497	ENSSFOG00015005346	cirbpb	100	63.021	Scleropages_formosus
ENSMAMG00000010168	cirbpa	100	71.717	ENSSMAG00000002412	cirbpa	100	66.667	Scophthalmus_maximus
ENSMAMG00000010168	cirbpa	100	71.978	ENSSDUG00000016099	cirbpa	100	70.330	Seriola_dumerili
ENSMAMG00000010168	cirbpa	60	93.578	ENSSLDG00000011320	cirbpa	53	93.578	Seriola_lalandi_dorsalis
ENSMAMG00000010168	cirbpa	100	70.109	ENSSPAG00000023037	cirbpa	99	63.187	Stegastes_partitus
ENSMAMG00000010168	cirbpa	100	70.330	ENSTRUG00000010187	cirbpa	100	67.033	Takifugu_rubripes
ENSMAMG00000010168	cirbpa	100	78.689	ENSTNIG00000000450	cirbpa	100	75.410	Tetraodon_nigroviridis
ENSMAMG00000010168	cirbpa	99	83.516	ENSXCOG00000008262	cirbpa	99	82.967	Xiphophorus_couchianus
ENSMAMG00000010168	cirbpa	100	84.699	ENSXMAG00000019336	cirbpa	100	84.153	Xiphophorus_maculatus