EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMAMG00000010241 (Gene tree)
Gene ID: 113123120
Gene Symbol: sf3b1
Alias: tst|wu:fb99f09
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Mastacembelus_armatus
Status: putative
Strand: Minus strand
Length: 13139 bases
Position: chrOOHQ01000093.1:23580480-23593618
Accession: 113123120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMAMP00000015170	SF3b1	PF08920.10	3.6e-47	1	1
ENSMAMP00000015205	SF3b1	PF08920.10	4.6e-47	1	1
ENSMAMP00000015232	SF3b1	PF08920.10	1.6e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMAMT00000015624	-	5054	-	ENSMAMP00000015205	1331 (aa)	-	-
ENSMAMT00000015651	-	3930	-	ENSMAMP00000015232	1309 (aa)	-	-
ENSMAMT00000015589	-	5411	-	ENSMAMP00000015170	1314 (aa)	XP_026150719	UPI000E45B79D

Gene Model

Click here to download ENSMAMG00000010241's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMAMG00000010241's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMAMG00000010241	sf3b1	100	93.617	ENSG00000115524	SF3B1	100	93.617	Homo_sapiens
ENSMAMG00000010241	sf3b1	100	99.163	ENSAPOG00000011894	sf3b1	100	99.163	Acanthochromis_polyacanthus
ENSMAMG00000010241	sf3b1	99	93.502	ENSAMEG00000013809	SF3B1	99	93.502	Ailuropoda_melanoleuca
ENSMAMG00000010241	sf3b1	100	97.641	ENSACIG00000020910	sf3b1	97	97.641	Amphilophus_citrinellus
ENSMAMG00000010241	sf3b1	100	99.163	ENSAOCG00000004478	sf3b1	100	99.163	Amphiprion_ocellaris
ENSMAMG00000010241	sf3b1	100	99.163	ENSAPEG00000012937	sf3b1	100	99.163	Amphiprion_percula
ENSMAMG00000010241	sf3b1	100	99.011	ENSATEG00000020435	sf3b1	100	99.011	Anabas_testudineus
ENSMAMG00000010241	sf3b1	99	93.946	ENSAPLG00000003993	SF3B1	99	93.946	Anas_platyrhynchos
ENSMAMG00000010241	sf3b1	100	93.764	ENSACAG00000009612	SF3B1	100	93.764	Anolis_carolinensis
ENSMAMG00000010241	sf3b1	100	93.617	ENSANAG00000021577	SF3B1	100	94.863	Aotus_nancymaae
ENSMAMG00000010241	sf3b1	100	97.717	ENSACLG00000023470	sf3b1	100	97.717	Astatotilapia_calliptera
ENSMAMG00000010241	sf3b1	100	97.036	ENSAMXG00000002219	sf3b1	100	97.036	Astyanax_mexicanus
ENSMAMG00000010241	sf3b1	100	93.617	ENSBTAG00000008915	SF3B1	100	93.617	Bos_taurus
ENSMAMG00000010241	sf3b1	98	65.606	WBGene00011605	sftb-1	97	65.758	Caenorhabditis_elegans
ENSMAMG00000010241	sf3b1	100	93.617	ENSCJAG00000003902	SF3B1	100	93.617	Callithrix_jacchus
ENSMAMG00000010241	sf3b1	100	93.617	ENSCAFG00000010826	SF3B1	100	93.617	Canis_familiaris
ENSMAMG00000010241	sf3b1	100	93.617	ENSCAFG00020004750	SF3B1	100	93.617	Canis_lupus_dingo
ENSMAMG00000010241	sf3b1	100	93.617	ENSCHIG00000015226	SF3B1	100	93.617	Capra_hircus
ENSMAMG00000010241	sf3b1	100	93.541	ENSTSYG00000009214	SF3B1	100	93.541	Carlito_syrichta
ENSMAMG00000010241	sf3b1	99	93.445	ENSCAPG00000006547	SF3B1	99	93.445	Cavia_aperea
ENSMAMG00000010241	sf3b1	99	93.568	ENSCPOG00000009353	SF3B1	100	93.568	Cavia_porcellus
ENSMAMG00000010241	sf3b1	100	93.617	ENSCCAG00000020506	SF3B1	100	93.617	Cebus_capucinus
ENSMAMG00000010241	sf3b1	100	93.617	ENSCATG00000035735	SF3B1	100	93.617	Cercocebus_atys
ENSMAMG00000010241	sf3b1	99	93.573	ENSCLAG00000014767	SF3B1	99	93.573	Chinchilla_lanigera
ENSMAMG00000010241	sf3b1	100	93.617	ENSCSAG00000011505	SF3B1	100	93.617	Chlorocebus_sabaeus
ENSMAMG00000010241	sf3b1	76	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSMAMG00000010241	sf3b1	100	93.912	ENSCPBG00000021902	SF3B1	99	94.949	Chrysemys_picta_bellii
ENSMAMG00000010241	sf3b1	68	78.057	ENSCING00000002558	-	99	78.405	Ciona_intestinalis
ENSMAMG00000010241	sf3b1	99	79.834	ENSCSAVG00000002559	-	99	79.834	Ciona_savignyi
ENSMAMG00000010241	sf3b1	100	93.617	ENSCANG00000029415	SF3B1	100	93.617	Colobus_angolensis_palliatus
ENSMAMG00000010241	sf3b1	100	93.617	ENSCGRG00001016990	Sf3b1	100	93.617	Cricetulus_griseus_chok1gshd
ENSMAMG00000010241	sf3b1	100	93.617	ENSCGRG00000005301	Sf3b1	100	93.617	Cricetulus_griseus_crigri
ENSMAMG00000010241	sf3b1	100	94.140	ENSCSEG00000003860	sf3b1	100	94.140	Cynoglossus_semilaevis
ENSMAMG00000010241	sf3b1	96	98.337	ENSCVAG00000003680	sf3b1	99	98.337	Cyprinodon_variegatus
ENSMAMG00000010241	sf3b1	100	95.665	ENSDARG00000056138	sf3b1	100	95.665	Danio_rerio
ENSMAMG00000010241	sf3b1	100	93.546	ENSDNOG00000011754	SF3B1	100	93.546	Dasypus_novemcinctus
ENSMAMG00000010241	sf3b1	99	91.654	ENSDORG00000002399	Sf3b1	100	91.577	Dipodomys_ordii
ENSMAMG00000010241	sf3b1	100	75.880	FBgn0031266	Sf3b1	100	75.880	Drosophila_melanogaster
ENSMAMG00000010241	sf3b1	83	92.477	ENSETEG00000009188	SF3B1	100	92.477	Echinops_telfairi
ENSMAMG00000010241	sf3b1	99	86.086	ENSEBUG00000004325	sf3b1	100	89.014	Eptatretus_burgeri
ENSMAMG00000010241	sf3b1	100	93.617	ENSEASG00005020159	SF3B1	98	93.617	Equus_asinus_asinus
ENSMAMG00000010241	sf3b1	100	93.617	ENSECAG00000021657	SF3B1	98	93.617	Equus_caballus
ENSMAMG00000010241	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSMAMG00000010241	sf3b1	100	96.375	ENSELUG00000005977	sf3b1	98	96.375	Esox_lucius
ENSMAMG00000010241	sf3b1	100	93.617	ENSFCAG00000005038	SF3B1	100	93.617	Felis_catus
ENSMAMG00000010241	sf3b1	99	93.870	ENSFALG00000004281	SF3B1	99	93.870	Ficedula_albicollis
ENSMAMG00000010241	sf3b1	100	93.617	ENSFDAG00000017510	SF3B1	100	93.617	Fukomys_damarensis
ENSMAMG00000010241	sf3b1	100	97.262	ENSFHEG00000014333	sf3b1	100	97.262	Fundulus_heteroclitus
ENSMAMG00000010241	sf3b1	100	96.583	ENSGMOG00000006773	sf3b1	100	96.583	Gadus_morhua
ENSMAMG00000010241	sf3b1	100	93.988	ENSGALG00000008038	SF3B1	100	93.988	Gallus_gallus
ENSMAMG00000010241	sf3b1	98	98.301	ENSGAFG00000000704	sf3b1	100	98.301	Gambusia_affinis
ENSMAMG00000010241	sf3b1	100	97.492	ENSGACG00000008839	sf3b1	100	97.492	Gasterosteus_aculeatus
ENSMAMG00000010241	sf3b1	100	93.273	ENSGAGG00000017478	SF3B1	100	93.273	Gopherus_agassizii
ENSMAMG00000010241	sf3b1	99	89.256	ENSGGOG00000009264	SF3B1	99	89.256	Gorilla_gorilla
ENSMAMG00000010241	sf3b1	99	97.790	ENSHBUG00000007705	sf3b1	99	97.790	Haplochromis_burtoni
ENSMAMG00000010241	sf3b1	99	93.573	ENSHGLG00000008285	-	99	93.573	Heterocephalus_glaber_female
ENSMAMG00000010241	sf3b1	99	91.584	ENSHGLG00100005535	-	99	91.584	Heterocephalus_glaber_male
ENSMAMG00000010241	sf3b1	100	97.352	ENSHCOG00000016775	sf3b1	100	97.352	Hippocampus_comes
ENSMAMG00000010241	sf3b1	100	96.730	ENSIPUG00000013171	sf3b1	100	96.730	Ictalurus_punctatus
ENSMAMG00000010241	sf3b1	100	93.617	ENSSTOG00000011034	SF3B1	100	93.617	Ictidomys_tridecemlineatus
ENSMAMG00000010241	sf3b1	99	93.548	ENSJJAG00000010903	Sf3b1	99	93.548	Jaculus_jaculus
ENSMAMG00000010241	sf3b1	100	97.724	ENSKMAG00000004009	sf3b1	100	97.724	Kryptolebias_marmoratus
ENSMAMG00000010241	sf3b1	100	97.565	ENSLBEG00000022208	sf3b1	100	97.565	Labrus_bergylta
ENSMAMG00000010241	sf3b1	99	90.570	ENSLACG00000014832	SF3B1	99	90.570	Latimeria_chalumnae
ENSMAMG00000010241	sf3b1	100	95.609	ENSLOCG00000003899	sf3b1	100	95.609	Lepisosteus_oculatus
ENSMAMG00000010241	sf3b1	100	93.617	ENSLAFG00000001956	SF3B1	100	93.617	Loxodonta_africana
ENSMAMG00000010241	sf3b1	99	93.573	ENSMMUG00000022430	SF3B1	99	93.573	Macaca_mulatta
ENSMAMG00000010241	sf3b1	100	93.617	ENSMNEG00000042333	SF3B1	100	94.863	Macaca_nemestrina
ENSMAMG00000010241	sf3b1	94	89.482	ENSMLEG00000026141	SF3B1	98	89.627	Mandrillus_leucophaeus
ENSMAMG00000010241	sf3b1	100	97.717	ENSMZEG00005021254	sf3b1	100	97.717	Maylandia_zebra
ENSMAMG00000010241	sf3b1	99	93.333	ENSMGAG00000007017	SF3B1	99	93.333	Meleagris_gallopavo
ENSMAMG00000010241	sf3b1	99	89.365	ENSMAUG00000009071	Sf3b1	99	89.365	Mesocricetus_auratus
ENSMAMG00000010241	sf3b1	100	93.617	ENSMICG00000013879	SF3B1	100	93.617	Microcebus_murinus
ENSMAMG00000010241	sf3b1	99	89.297	ENSMOCG00000000455	Sf3b1	99	89.297	Microtus_ochrogaster
ENSMAMG00000010241	sf3b1	84	98.362	ENSMMOG00000000475	sf3b1	100	98.362	Mola_mola
ENSMAMG00000010241	sf3b1	100	93.161	ENSMODG00000012275	SF3B1	100	93.161	Monodelphis_domestica
ENSMAMG00000010241	sf3b1	100	99.011	ENSMALG00000017211	sf3b1	100	99.011	Monopterus_albus
ENSMAMG00000010241	sf3b1	100	93.617	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.617	Mus_caroli
ENSMAMG00000010241	sf3b1	100	93.617	ENSMUSG00000025982	Sf3b1	100	93.617	Mus_musculus
ENSMAMG00000010241	sf3b1	100	93.617	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.617	Mus_spretus
ENSMAMG00000010241	sf3b1	100	93.617	ENSMPUG00000007799	SF3B1	100	93.617	Mustela_putorius_furo
ENSMAMG00000010241	sf3b1	100	92.477	ENSMLUG00000000840	SF3B1	100	92.477	Myotis_lucifugus
ENSMAMG00000010241	sf3b1	99	93.293	ENSNGAG00000021884	-	100	93.293	Nannospalax_galili
ENSMAMG00000010241	sf3b1	100	92.559	ENSNBRG00000015816	sf3b1	100	92.624	Neolamprologus_brichardi
ENSMAMG00000010241	sf3b1	100	93.617	ENSNLEG00000006861	SF3B1	100	93.617	Nomascus_leucogenys
ENSMAMG00000010241	sf3b1	69	99.717	ENSMEUG00000015848	-	67	99.717	Notamacropus_eugenii
ENSMAMG00000010241	sf3b1	100	81.418	ENSOPRG00000008596	SF3B1	100	81.418	Ochotona_princeps
ENSMAMG00000010241	sf3b1	100	93.617	ENSODEG00000011153	-	100	93.617	Octodon_degus
ENSMAMG00000010241	sf3b1	100	97.717	ENSONIG00000013758	sf3b1	100	97.717	Oreochromis_niloticus
ENSMAMG00000010241	sf3b1	82	95.849	ENSOCUG00000012722	-	96	95.849	Oryctolagus_cuniculus
ENSMAMG00000010241	sf3b1	100	97.717	ENSORLG00000020219	sf3b1	100	97.717	Oryzias_latipes
ENSMAMG00000010241	sf3b1	100	97.717	ENSORLG00020001746	sf3b1	100	97.717	Oryzias_latipes_hni
ENSMAMG00000010241	sf3b1	64	96.441	ENSORLG00015001759	sf3b1	98	96.441	Oryzias_latipes_hsok
ENSMAMG00000010241	sf3b1	100	98.175	ENSOMEG00000019231	sf3b1	100	98.175	Oryzias_melastigma
ENSMAMG00000010241	sf3b1	50	71.752	ENSOGAG00000000267	-	100	73.529	Otolemur_garnettii
ENSMAMG00000010241	sf3b1	100	93.617	ENSOARG00000015374	SF3B1	100	93.617	Ovis_aries
ENSMAMG00000010241	sf3b1	100	93.617	ENSPPAG00000035007	SF3B1	100	93.617	Pan_paniscus
ENSMAMG00000010241	sf3b1	100	93.617	ENSPPRG00000009090	SF3B1	100	93.617	Panthera_pardus
ENSMAMG00000010241	sf3b1	100	93.617	ENSPTIG00000021557	SF3B1	100	93.617	Panthera_tigris_altaica
ENSMAMG00000010241	sf3b1	99	86.513	ENSPTRG00000012771	SF3B1	99	86.513	Pan_troglodytes
ENSMAMG00000010241	sf3b1	100	93.617	ENSPANG00000013417	SF3B1	100	93.617	Papio_anubis
ENSMAMG00000010241	sf3b1	100	96.279	ENSPKIG00000000784	sf3b1	100	96.279	Paramormyrops_kingsleyae
ENSMAMG00000010241	sf3b1	99	92.791	ENSPSIG00000017222	SF3B1	98	92.791	Pelodiscus_sinensis
ENSMAMG00000010241	sf3b1	91	97.397	ENSPMGG00000004330	sf3b1	99	97.397	Periophthalmus_magnuspinnatus
ENSMAMG00000010241	sf3b1	99	93.573	ENSPEMG00000010699	Sf3b1	100	93.573	Peromyscus_maniculatus_bairdii
ENSMAMG00000010241	sf3b1	100	88.813	ENSPMAG00000001311	sf3b1	100	89.116	Petromyzon_marinus
ENSMAMG00000010241	sf3b1	100	93.161	ENSPCIG00000010642	SF3B1	100	93.161	Phascolarctos_cinereus
ENSMAMG00000010241	sf3b1	100	98.404	ENSPFOG00000000073	sf3b1	100	98.404	Poecilia_formosa
ENSMAMG00000010241	sf3b1	100	98.479	ENSPLAG00000002293	sf3b1	100	98.479	Poecilia_latipinna
ENSMAMG00000010241	sf3b1	100	98.479	ENSPMEG00000000446	sf3b1	98	98.479	Poecilia_mexicana
ENSMAMG00000010241	sf3b1	100	98.555	ENSPREG00000019652	sf3b1	100	98.555	Poecilia_reticulata
ENSMAMG00000010241	sf3b1	100	96.768	ENSPPYG00000013044	SF3B1	100	96.768	Pongo_abelii
ENSMAMG00000010241	sf3b1	100	93.465	ENSPCAG00000009292	SF3B1	100	93.465	Procavia_capensis
ENSMAMG00000010241	sf3b1	100	93.617	ENSPCOG00000024074	SF3B1	100	93.617	Propithecus_coquereli
ENSMAMG00000010241	sf3b1	100	93.617	ENSPVAG00000008302	SF3B1	100	93.617	Pteropus_vampyrus
ENSMAMG00000010241	sf3b1	100	97.641	ENSPNYG00000014939	sf3b1	100	97.641	Pundamilia_nyererei
ENSMAMG00000010241	sf3b1	100	96.809	ENSPNAG00000008288	sf3b1	100	96.809	Pygocentrus_nattereri
ENSMAMG00000010241	sf3b1	100	93.617	ENSRNOG00000013516	Sf3b1	100	93.617	Rattus_norvegicus
ENSMAMG00000010241	sf3b1	99	89.878	ENSRBIG00000026096	SF3B1	100	89.878	Rhinopithecus_bieti
ENSMAMG00000010241	sf3b1	100	93.617	ENSRROG00000031308	SF3B1	100	93.617	Rhinopithecus_roxellana
ENSMAMG00000010241	sf3b1	100	93.617	ENSSBOG00000020080	SF3B1	100	93.617	Saimiri_boliviensis_boliviensis
ENSMAMG00000010241	sf3b1	100	93.161	ENSSHAG00000017564	SF3B1	100	93.161	Sarcophilus_harrisii
ENSMAMG00000010241	sf3b1	100	96.730	ENSSFOG00015021535	sf3b1	100	96.730	Scleropages_formosus
ENSMAMG00000010241	sf3b1	99	97.951	ENSSMAG00000013977	sf3b1	99	97.951	Scophthalmus_maximus
ENSMAMG00000010241	sf3b1	100	99.011	ENSSDUG00000017422	sf3b1	100	99.011	Seriola_dumerili
ENSMAMG00000010241	sf3b1	100	98.935	ENSSLDG00000019495	sf3b1	100	98.935	Seriola_lalandi_dorsalis
ENSMAMG00000010241	sf3b1	75	98.592	ENSSARG00000007016	SF3B1	76	98.592	Sorex_araneus
ENSMAMG00000010241	sf3b1	100	93.683	ENSSPUG00000000410	SF3B1	100	93.683	Sphenodon_punctatus
ENSMAMG00000010241	sf3b1	100	99.087	ENSSPAG00000010451	sf3b1	99	99.087	Stegastes_partitus
ENSMAMG00000010241	sf3b1	91	93.256	ENSSSCG00000016075	SF3B1	100	94.863	Sus_scrofa
ENSMAMG00000010241	sf3b1	100	93.988	ENSTGUG00000010553	SF3B1	100	93.988	Taeniopygia_guttata
ENSMAMG00000010241	sf3b1	100	97.945	ENSTRUG00000015534	sf3b1	100	97.945	Takifugu_rubripes
ENSMAMG00000010241	sf3b1	84	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSMAMG00000010241	sf3b1	92	93.173	ENSTTRG00000003414	SF3B1	92	93.173	Tursiops_truncatus
ENSMAMG00000010241	sf3b1	84	97.571	ENSUAMG00000018506	SF3B1	99	97.571	Ursus_americanus
ENSMAMG00000010241	sf3b1	100	93.617	ENSUMAG00000020945	SF3B1	100	93.617	Ursus_maritimus
ENSMAMG00000010241	sf3b1	95	93.268	ENSVPAG00000005798	SF3B1	96	93.268	Vicugna_pacos
ENSMAMG00000010241	sf3b1	100	93.617	ENSVVUG00000025948	SF3B1	95	93.617	Vulpes_vulpes
ENSMAMG00000010241	sf3b1	100	92.249	ENSXETG00000013339	sf3b1	100	92.249	Xenopus_tropicalis
ENSMAMG00000010241	sf3b1	100	93.840	ENSXCOG00000018086	sf3b1	100	94.144	Xiphophorus_couchianus
ENSMAMG00000010241	sf3b1	100	98.327	ENSXMAG00000007369	sf3b1	100	98.382	Xiphophorus_maculatus